mRNA_P-littoralis_Contig763.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig763.8.1
Unique NamemRNA_P-littoralis_Contig763.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: D7FVV5_ECTSI (Transcription elongation factor 1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.200e-53
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNAMGGAAEEAKNDEQFIDNQEIAEG 678
            MGRRKKSTKKIV+KKNTTLDKVFKCPFCNHDKVVECTM++KE TARLLCRMC+V +EM I+YLTEPIDVYTDWIDECEA NA+  AAEE K+DEQFID+QEIAEG
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG 105
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: A0A329SPD8_9STRA (Transcription elongation factor 1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SPD8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 9.770e-28
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:  361 AMGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNA 609
            AMGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC MDR+ N   L CR+C   F+  IHYL+ PIDVYTDWIDECEA NA
Sbjct:   45 AMGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 127
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: A0A6A3LNQ0_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNQ0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.170e-27
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:  352 TLFAMGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNA 609
            T  AMGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC MDR+ N   L CR+C   F+  IHYL+ PIDVYTDWIDECEA NA
Sbjct:   48 TERAMGRRKKSTKKISTRKKQIVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 133
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: M4B5A6_HYAAE (Transcription elongation factor 1 homolog n=16 Tax=Oomycota TaxID=4762 RepID=M4B5A6_HYAAE)

HSP 1 Score: 115 bits (288), Expect = 3.120e-27
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNA 609
            MGRRKK+TKK+  +K   +  VFKCPFC+HD+ VEC MDR+ N   L CR+C   F+  IHYL+ PIDVYTDWIDECEA NA
Sbjct:    1 MGRRKKATKKVQTRKKQAVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: H3HB17_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3HB17_PHYRM)

HSP 1 Score: 120 bits (302), Expect = 7.630e-26
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:  355 LFAMGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNA 609
            L AMGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC MDR+ N   L CR+C   F+  IHYL+ PIDVYTDWIDECEA NA
Sbjct:  307 LIAMGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 391
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: A0A024U4B4_9STRA (Transcription elongation factor 1 homolog n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4B4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.020e-25
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNA 609
            MGRRK STKKIV +K   + +VFKCPFC+HD  V+C MDR  N   L CR+C   ++  I+YL+EPIDVYTDWIDECEA ++
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLTCRICSESYQSNINYLSEPIDVYTDWIDECEALHS 82
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: A0A485LI04_9STRA (Transcription elongation factor 1 homolog n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LI04_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.910e-25
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEA 600
            MGRRK STKKIV +K   + +VFKCPFC+HD  V+C MDR  N   L CR+C   ++  I+YL+EPIDVYTDWIDECEA
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEA 79
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: A0A835ZFT2_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.200e-23
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNA 609
            MGRRK STKKI  KK  TLD  FKCPFC HDKVV+CTM+ K+N   L CR C+ K+   I+YL+EPID++T+WID  EA +A
Sbjct:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHA 82
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: UPI001CC465E2 (transcription elongation factor 1 homolog n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC465E2)

HSP 1 Score: 99.8 bits (247), Expect = 1.870e-21
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNAMGG 618
            MG+RK S K    KK   L+ VF CPFCNH+K V CT+DRKE    L C +C+ K+   I+ L+EPID+Y++WIDECE  N M G
Sbjct:    1 MGKRKSSAKPAPKKKMEKLESVFNCPFCNHEKSVNCTIDRKEMIGELTCCICQEKYSTAINNLSEPIDIYSEWIDECEKVNDMDG 85
[Close]
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Match: A0A7S2EM35_TRICV (Transcription elongation factor 1 homolog (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EM35_TRICV)

HSP 1 Score: 96.3 bits (238), Expect = 3.340e-20
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  364 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCRMCEVKFEMGIHYLTEPIDVYTDWIDECEACNAMGGAAEEA 633
            MGRR K    +  KK  TL K FKCPFC +D VVEC MD +  T  L CR+C   ++M IH+L EP+DV+++W+D+CEA    GG   +A
Sbjct:    1 MGRRAKKAP-VQTKKRATLAKRFKCPFCANDNVVECKMDHRAGTGSLACRLCGASYQMPIHHLHEPVDVFSEWLDDCEAAERGGGTVGDA 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig763.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVV5_ECTSI4.200e-5384.76Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A329SPD8_9STRA9.770e-2865.06Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A6A3LNQ0_9STRA1.170e-2763.95Transcription elongation factor 1 homolog n=1 Tax=... [more]
M4B5A6_HYAAE3.120e-2762.20Transcription elongation factor 1 homolog n=16 Tax... [more]
H3HB17_PHYRM7.630e-2664.71Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A024U4B4_9STRA1.020e-2559.76Transcription elongation factor 1 homolog n=3 Tax=... [more]
A0A485LI04_9STRA1.910e-2562.03Transcription elongation factor 1 homolog n=6 Tax=... [more]
A0A835ZFT2_9STRA1.200e-2360.98Transcription elongation factor 1 homolog n=1 Tax=... [more]
UPI001CC465E21.870e-2152.94transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A7S2EM35_TRICV3.340e-2048.89Transcription elongation factor 1 homolog (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig763contigP-littoralis_Contig763:39861..44867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVV5
Preferred nameELOF1
PFAMsElf1
Model size2119
Max annot lvl2759|Eukaryota
KEGG koko:K13617
Hectar predicted targeting categoryother localisation
GOsGO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045815,GO:0045893,GO:0045935,GO:0046483,GO:0046872,GO:0046914,GO:0048096,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons4
Evalue8.9e-61
EggNOG OGsCOG4888@1|root,KOG3214@2759|Eukaryota
Ec32 ortholog descriptionTranscription elongation factor 1
Ec32 orthologEc-01_002290.1
EC3.1.1.89
Descriptionchromatin-mediated maintenance of transcription
Cds size318
COG categoryK
BRITEko00000,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig763.8.1prot_P-littoralis_Contig763.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig763 40233..43429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791576.4903822-UTR-P-littoralis_Contig763:39860..401241680791576.4903822-UTR-P-littoralis_Contig763:39860..40124Pylaiella littoralis U1_48UTRP-littoralis_Contig763 39861..40124 +
1680791576.5076482-UTR-P-littoralis_Contig763:40133..402321680791576.5076482-UTR-P-littoralis_Contig763:40133..40232Pylaiella littoralis U1_48UTRP-littoralis_Contig763 40134..40232 +
1680791576.5588815-UTR-P-littoralis_Contig763:43429..448671680791576.5588815-UTR-P-littoralis_Contig763:43429..44867Pylaiella littoralis U1_48UTRP-littoralis_Contig763 43430..44867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791576.523181-CDS-P-littoralis_Contig763:40232..403451680791576.523181-CDS-P-littoralis_Contig763:40232..40345Pylaiella littoralis U1_48CDSP-littoralis_Contig763 40233..40345 +
1680791576.536041-CDS-P-littoralis_Contig763:42543..426141680791576.536041-CDS-P-littoralis_Contig763:42543..42614Pylaiella littoralis U1_48CDSP-littoralis_Contig763 42544..42614 +
1680791576.5475402-CDS-P-littoralis_Contig763:43295..434291680791576.5475402-CDS-P-littoralis_Contig763:43295..43429Pylaiella littoralis U1_48CDSP-littoralis_Contig763 43296..43429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig763.8.1

>prot_P-littoralis_Contig763.8.1 ID=prot_P-littoralis_Contig763.8.1|Name=mRNA_P-littoralis_Contig763.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMDRKENTARLLCR
MCEVKFEMGIHYLTEPIDVYTDWIDECEACNAMGGAAEEAKNDEQFIDNQ
EIAEG*
back to top

mRNA from alignment at P-littoralis_Contig763:39861..44867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig763.8.1 ID=mRNA_P-littoralis_Contig763.8.1|Name=mRNA_P-littoralis_Contig763.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5007bp|location=Sequence derived from alignment at P-littoralis_Contig763:39861..44867+ (Pylaiella littoralis U1_48)
CCCGGGGGCCGCTTACCTTCGCCACGGGTGAGCGATACTACTGCCATGAG
ACAATAAATTGGCTAGCCTACTAGCGATGCAGTGAATCATTGTACGTATC
TCGGCCTACTGGCTCTGCCTGGTCCACTTCACTACTAGCGCTGCTCTAAA
GCTGCTCCTCCGTTATTTTGTTTTTCCTTCTCTTGATTATAATACGGAAA
CCCGCAGGACCTGCCGTGGTACGCGATCATAAGCGGCGCAAGCAGAGCAG
AGGCAGCAGCAGCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GTGACAGGGGCAGCCAGGTGGAGCAGAAGAAGAACGGAGAGGACCCAACA
GCAGTTTTAGACTCTTTTCGCGATGGGGCGGAGAAAGAAGAGCACGAAGA
AGATCGTGATCAAGAAAAATACGACACTCGACAAGGTGTTCAAGTGCCCC
TTCTGCAACCACGATAAGGTCGTCGAATGCACCATGTGAGACACATCATC
AGATACCATCGCAAGTACTTTACTGCTTCGGCATGGTGTCGCATCATGCG
ATTACTTGTATACCATGCATCATCACAACCAGGAGAGGAGCACGCCTCCA
TCGACCCGTAGCGGCACCCGCCCGTGATACCTCCACCTCTCTGCCTCTCT
CTGCCCTATGATGCACGTAGAATCCTACAAGAATACGCTGTAGCAGGTAC
GGCGTCTGCACTGCAACGAAGAAGCAGAAAAAGTGCCCTGACCACGTACT
GCTGTGTGGGCCGTATGCTCCCTTAACGTTCTTGTGCAACTGCACGATGT
ACAACTGTAGCCAGGCTTCGTTACTTGGTCTCGGAACGCTATACACACTG
TTCGAAGTACTCAATGGCGGGCCAAGCCATACCTCCATCTACCGGTATTT
TCCAACAACAGCAGCAGTGGAGTTTCGCTCCCTCTTCTCTTCATGCGTTG
GTGTGTTCCGTGACTTCGTACGTATTTTCTCGACCTTTTCCCTAGACGAG
GCATATCCAGGTATGATGCTTCGAAGTGAAACACAAACAGGTCGATCGGG
GCTGGACGAGCGAAAATCAAACTCCACACCCCTTTTTTAGCTACAGTATT
GGCTGTTGGCTGTTGGCTGTTGTTGATTCTCACTTCCTATCAGCTCACTA
AAGTCGTCTCGCCCTTGGCCACAAACCAGGCACACATCGTGCCAGGAGAG
GAAACAAAATAAAAAACGAAGTAAATGAGACATGCCTAAAGAAGAGAGGT
AGGAAAAACAGGCAAAGGTTTTTGCGCCACTACTACAAGTATGAGGTTTC
TTCCGTCGTGACCAAATTAAAAAAAAAAATGAGTACTCTGTACAGTACAG
GCACAGACAAAACGATTTTGAAAACAAACGAAAAACGAACTGAACCTTCA
AGGCAAAGAGTAAAGAGCGTTTCCTACTCCTAACTGTGCCGAAAACGTCT
GCCGATCATGACCTAGATTCGGTCAGCGGCGAGTCTTGCAAAAGGCCCAA
TATTCTGCTTTTGGGACACAAGAAGTGACCACGTTTATCGGTGCTCGTCC
CCTCGAACTCCAATCGTTCTTGTGTTCTGAGCGTGGGCACACCATCTGTA
AAAAAGTAGATTGTGGGCTCTTGTCTACCGTGAAATTCTGCTCGACGTCC
AATTTTCGGTGGTATTTTGCTGTTGGCAACCTGCCCGTTTTTCCCCATCG
CTTCCGGCTGGAGCGCCAATCTAAAAATGTCTCCGGCAATTGAACCTCGG
ACCACTCCGCCACCCGAATCTCGCGGTAGACAGCCCACAACCTACAATCT
TGTTGTGCCCAGGGTCACAACACAGGAGCGTGCGCCCCAAAAAGTTCGGT
CGCGATTCGTATCCTAGGGGGCCGAGCACCGATTGACGTTGTCACGCGTT
TTGTTCCGAAAGCAATATATTGGGCCGTTTGAGGGTCTCGCCGCTGACCG
AATATATGCTATTTGCGGCAGGAATTTTCATCTGCACCGTAAGAAACGGC
CCAAGGCCCACAAAAGGAAGCATTAATCCGAGAACAAGAGAAGACGAAAA
AACTACCTAGCATAATATGATACCCGTGGTACGATACCTGCACATCCATT
CTGGACCCTACCGAATGTTGTAGCTCAAAACCCCCTCAACCTATTCTGAA
AGCTCAATGAACCCTCTCAAAGGGGACAAGGCGCCAGTACAGTAGAAACA
GCAGGTAACACCTGTCAAAAGGCTCTTCCACGAGATCTTTACACAAGTTT
CATCATCCTTCTCGGCTTTTCCACGAGATCGTCGCAAATGAAAATGTGCT
TCGCACGATATGTTTTGCGTACCTACACCGGTAGGTTTTTCTTTGTTGAT
TGCGGAGCTTCCGTTCATTGACAACGGGTATTCTTGTGAGTCCTCTACTG
CCGTCGCGCATTTCATGCTTTCTGAAGACCGGCAGATTTCAACCTAACAG
ATACTGGAACGATACAACAAGATCGATAAAACCCCACGACGGGCGGGATC
TCCTGCAAAAATTTGTTGCAGCAGGCTCGAAAAACTTCTGAACAAAAACT
TCAGCAGATTGGTGACACATTCCCCCTTTTCCCGCTCGGCTGCCTTTCTC
GATGTCGGCGACTTGGCTACTGGCGTGTCTCCACGAACGGCTTCTACTCG
TTGTGTTCGGGCAACCGGTGGTCGGTCGAGAAGGGACAGGAAGGAGAACA
CTGCGCGGCTGCTCTGCCGGATGTGCGAGGTCAAGTTCGAAATGGGCATT
CATTGTGAGTCGCGGTGTCATTCAGCTGAACGCGCACCAGTTGCATTTGG
TGAACACAGCCAGCATTTACTTTCGAAAGCCGCACGCAGGAAGGGCAGGT
ATCAGGCCAGCCCGCGCGTGAACAGGCCAGCAGCTATCATACTGCTGCAC
ACTTAAAGGAAGTACAAGTACAAGATACTACGGTGACCCCTTTCGGCCGA
TTTCCATGAGCCCGGTTGGTTACTCCGCAATGAAGAGGGTGCCAACATCA
AAATGACGAACACGATATCGTGAAAGCTATCGTCGAGAATGTTGCAACGC
CGATCGATCGCCCTTTTTGGCACCGTTGCTGCTCTTCCTGCTGTGTGCAC
TAATGGAACGTTGAAAAATATAAATTTGGCGTATCCAGAGGGTGCCGCGG
CATGTTACGCAGCGTACGGTATGTGTGTAGCGTTGGGCCAAGGCACTCGT
GGGTACAATTCGTTTCGTAGTCCGCTTTCGGCACTCAAACTTGCGTGCCA
TTCGACACGGTAGACCCATGTAACGCACCATTTTTGTTAACTTTTTTCAC
AAAACCTGCTGCATCGACGCGCAGCAGTCTCCTGTACCTGGTATGCCAAT
ATCACGATGACGGCAGGGCAACTCTTCCCTTTGGGTTTACCCCCTTCCCC
CCCCTGCTCTTTGTTGCCACCTCGTATATAACTAGACCTGACGGAGCCCA
TCGACGTGTACACAGACTGGATCGACGAGTGCGAGGCTTGCAATGCGATG
GGGGGGGCTGCTGAAGAGGCGAAAAATGACGAGCAGTTCATCGACAATCA
AGAAATAGCGGAGGGATAGCCTCGAGTATCATCCCCCCTGTACATTTATT
TCCGGGAAAAAGTCGGTTCAAAATGAGAAGAGCTACCAAAAGCCACCAAG
CCCAGGCTTGCTGTTCGACGCGTAGAGTTTATCTTACTACCTTGATGGCA
GGAATGCCGGTTTGGCTGTCGCGCTTGTCCTTGTGGAGCGTTCGTATTTT
TGCTGTTGTTTCGTTTCAAATATCAAGAACCTGCTTTGCGTGGAAGAAGA
CAACGAAAAAATGGCTGACGATATAGCGGAGTTCATGGGTGAACTCAAAC
GCGCAACCAACTGGTCTAATGCAGCGCAACAAATGGTTTCGTCCGCCGGC
TGGCTGCGCGACAAGGATGTGAATGGTGGTCCATTCCGCTCGCGAGTTTC
CACGCGTCGCCGAGAGGCCGAAGTGTTGGCCACCCAACCGCGAGAGAATA
AGTGGTTGTTCACGTACCCTGTTGGACTAGCTGCGGAATTTCAACGGGGG
GGGAAGGGGCAAAATCTGCTGCGATAAAGGATCGACACTGCTGTCTATAC
GTGTCCTTTGTTTGCCCTCCACGCACGACCCCGACGAGCTCAAACGACAC
GAAATCTTCGGCGGGACGAAGAACGGTCAATGCGTGGCTGTTATCGTCGA
AATGTTATGCCTGTGGTACGGCATGTATCGAGGAGATTCAAGCTACAGTA
GTATTGCTCCCCTGCGTGTGCGCGTGTGCTTTCATCCCATCTCTTCTGGA
GGTGCTGTCATCGTATCTCCCCTTGACGCCGTCTGTACCCGTTCAGTGCT
AAGTTGGGCGCACCAGCCGAGGTTACACAGGAGAAAGGTCAGCAAAGCAT
TATTTTATTTGGGAGGGAGTGAGGTCAAAAGAGTACCAGGTATACTTGAT
GGCACGCCGTTTAGTTTTAGCCAACGCGCTGATGTATGAGAGATTTTTTT
TCGGGGAAGGGGAAAATCGCTTGTGTTGGTCTCCGCTTTCCTTTTGCGTC
GTGCTTACCCTAATTTTTATGGCGAGAAGGGTTGCACAAAAGGAAACTCA
ACGCAGCAGATATTTTTGGGGGGGGGAAACGTTGCAACAGGGTATACCTC
TGGGTCTCCGCCTTCTTTCTGCGGTGATTGTGCCTTTATTTTTACCGTGT
GGAGGGGTCTGGCGATCCCTCTTTTTTCCTTTTTGGCTCCCCTACTGTAC
GCACGCACACCGTAGGCGTTTATGTGATTCCGTCCCGTAATAAAGACGTT
TCGTAGCCAAAAAGGGGCCGCTTGTACCTGTTTATACACTGCAAAACAAA
CACCTGGAGTGATTATTGCGAGCGTTCGATTCTACATGAGACACCATCAA
ACCCCTCTCCGCCCGGTAGAAAATAGAAAGTTATTTGTGCTGGTGTGAAA
TGGAGCATCGGGGGCTCGTTCTGTTACGGTTTTGTGGCGTGCAGCATTCG
AGGCTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig763:39861..44867+

>mRNA_P-littoralis_Contig763.8.1 ID=mRNA_P-littoralis_Contig763.8.1|Name=mRNA_P-littoralis_Contig763.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig763:39861..44867+ (Pylaiella littoralis U1_48)
ATGGGGCGGAGAAAGAAGAGCACGAAGAAGATCGTGATCAAGAAAAATAC
GACACTCGACAAGGTGTTCAAGTGCCCCTTCTGCAACCACGATAAGGTCG
TCGAATGCACCATGGACAGGAAGGAGAACACTGCGCGGCTGCTCTGCCGG
ATGTGCGAGGTCAAGTTCGAAATGGGCATTCATTACCTGACGGAGCCCAT
CGACGTGTACACAGACTGGATCGACGAGTGCGAGGCTTGCAATGCGATGG
GGGGGGCTGCTGAAGAGGCGAAAAATGACGAGCAGTTCATCGACAATCAA
GAAATAGCGGAGGGATAG
back to top