mRNA_P-littoralis_Contig762.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig762.31.1
Unique NamemRNA_P-littoralis_Contig762.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig762.31.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.840e-22
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 EGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTF 255
            +G+ DN T PEIAA ++ A  A+ E PG+ ++ G V AT ++I+ DGSYRNRNH SH VNV+ASV+ M+PDHRG  +SV+D VTF
Sbjct:    2 DGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRMKPDHRGLMDSVLDQVTF 86
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BLAST of mRNA_P-littoralis_Contig762.31.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.310e-21
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 EGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTF 255
            +G+ DN T PEIAA ++ A  A+ E PG+ ++ G V AT ++I+ DGSYRNRNH SH VNV+ASV+  +PDHRG  +SV+D VTF
Sbjct:  698 DGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRTKPDHRGLMDSVLDQVTF 782
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BLAST of mRNA_P-littoralis_Contig762.31.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.790e-17
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 EGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTF 255
            EG   N T  +IA  L+ + + RGEEPG+ V+   V  TP+ +A DGSYRNRNH +H++NV+ S++L E ++RG +++V   VTF
Sbjct:  646 EGHISNTTWTDIAVGLLRSMEDRGEEPGYKVEGDVVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRGLRDAVFGMVTF 730
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig762.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHR1_9PHAE1.840e-2256.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU55_9PHAE1.310e-2155.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE2.790e-1745.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig762contigP-littoralis_Contig762:125835..126280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791575.674602-CDS-P-littoralis_Contig762:125835..1259641680791575.674602-CDS-P-littoralis_Contig762:125835..125964Pylaiella littoralis U1_48CDSP-littoralis_Contig762 125836..125964 -
1680791575.691315-CDS-P-littoralis_Contig762:126154..1262801680791575.691315-CDS-P-littoralis_Contig762:126154..126280Pylaiella littoralis U1_48CDSP-littoralis_Contig762 126155..126280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig762.31.1prot_P-littoralis_Contig762.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig762 125836..126280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig762.31.1

>prot_P-littoralis_Contig762.31.1 ID=prot_P-littoralis_Contig762.31.1|Name=mRNA_P-littoralis_Contig762.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
EGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYR
NRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTF
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mRNA from alignment at P-littoralis_Contig762:125835..126280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig762.31.1 ID=mRNA_P-littoralis_Contig762.31.1|Name=mRNA_P-littoralis_Contig762.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=446bp|location=Sequence derived from alignment at P-littoralis_Contig762:125835..126280- (Pylaiella littoralis U1_48)
GAAGGAGCTACCGACAACGCCACTCTTCCGGAAATCGCGGCATGCCTCAT
GATGGCCGCCAAGGCACGCGGCGAAGAACCTGGTTGGGTCGTCAAGGACG
GGTGTGTCTGGGCCACGCCGATATCGGTACGTGGTCTTGTTGGGGTACGG
CCGGGGCGAGTTTTGCGGTTCGTTAAGCATAGTGCCACGAGCGACGTTCT
GTCGACCCGGCATATGTTGTGGTTGTTATAGTTTCCTGTCCCCCACTCCC
CCCCCTCCCCAACACTCCTTCTCTCTACCCCCGACCCCAACAACACCGAC
ACACTGCAAATCGCAGATTGCGCTGGACGGGTCATACCGTAATCGGAATC
ACGCATCTCATGCTGTGAACGTCATCGCGTCTGTACAGCTTATGGAGCCA
GACCACCGCGGCTGCAAGAACAGTGTCATCGACGCAGTTACATTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig762:125835..126280-

>mRNA_P-littoralis_Contig762.31.1 ID=mRNA_P-littoralis_Contig762.31.1|Name=mRNA_P-littoralis_Contig762.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig762:125835..126280- (Pylaiella littoralis U1_48)
GAAGGAGCTACCGACAACGCCACTCTTCCGGAAATCGCGGCATGCCTCAT
GATGGCCGCCAAGGCACGCGGCGAAGAACCTGGTTGGGTCGTCAAGGACG
GGTGTGTCTGGGCCACGCCGATATCGATTGCGCTGGACGGGTCATACCGT
AATCGGAATCACGCATCTCATGCTGTGAACGTCATCGCGTCTGTACAGCT
TATGGAGCCAGACCACCGCGGCTGCAAGAACAGTGTCATCGACGCAGTTA
CATTC
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