mRNA_P-littoralis_Contig76.167.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig76.167.1 vs. uniprot
Match: A0A6H5KFY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE) HSP 1 Score: 409 bits (1050), Expect = 1.990e-123 Identity = 381/998 (38.18%), Postives = 500/998 (50.10%), Query Frame = 1
Query: 142 DKCAAVLFASTKSVAAAXXXXXXXXPADESPWKNWEVQPMMGTTR--------AREEINNKGPDTGVAGHSYRDFVPFETPTNENKVLLAGGVVAV---AEDSSRAFTVAQ---------------EFAEFPVGQTYVASGDEN---EK------------------------NMYMQKMSPLSSPEGFEIVTPLEKEGQGHKPGKKIIVERISGASPAGCSTHGGGGGGDISHPGTLRQNKETAQGT-EERVLPPLSTEAATAQFVTSKQHEAATSRQXXXXXXTSHRDMEKLRVSAPAPAASSDSRVSQQENKHPDALLGDQTCIAVQKGSNVLGASSGDTGASEEKTKAREQAKRLALEVARLRSTLRVTTSELNTERSTRVRLEDEWWRKMREWEEDRGRLITSKQEVERVSRSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAESAMNGVIKVQDRLIRALQAELEMITNARETAQENTREAKDQLRLYVEDFLHWRDRAKRLEAHLADPHHLHQRPELKVEAPPPWGSPPTQRXXXXEAFQQTDGGGAMASVAVESSLAAASTSADHAGITQTGNKNNDGEVAELSIPEKYARYFETTTGRYTAAPTRGGVALFGSPRIARGDRKGRSEAEAATAAAAWSTRSALAECSSSASSRVA-FQRSMKTQQEVSARLERDLAKARADLQSIYAGSRTKHGGGCGDGNVMGIGLLRRKEGRSGEIMAEEVQNSTTHGGHSAGEFE-------------------QDKASGYIAPHIVEGSHMARVLAALLGADSTATATAMGRLSDAPPPSLRLTDYPPMLQAVFGEGPAVALPLLAPTTASERPVVMGSDRRQARSGETRLGGAGVLKKQQARSWSYGPVPADGRQKRWARESRDVKVHEEDGFGRGADKDAADELNMHPAATNM---GSGACG--GGRDADRWGEQNTSGGEAGVAPGVAEVSQSSSSTDAFRGYEAKSSLLQRWLAERVSP 2898
++CA +LFAS + V AA ++SPW NW+VQ M G +RE +++GP V G +R+ +P +TP ++ K +A V + ++D++ A Q +F GQ G + EK +M+ + SPLSSPEG + + +E +G + G+ I V+ GA A S GGGGD S P T + A G ++ P L A T K+ EAAT +Q ++ ++ S+ APAA++D + N +Q + + G+ L GD + E R+QAKRLALEVARLRS+LR TTSELNTERSTRVRLEDEWWR+M+EWEE G L+ SKQE ER +R+AE +A+ AM GV+ VQDRLI+AL+ ELE+ +AR AQ+N EAKDQLRLYV DFL WR+RAK LEA L + H Q P L E P +GSP ++ EA Q+ + V + +A ++ G Q G+ N LSIPEKYARYFETTTG Y+A P+ A G+ RI + ++E A AAAAWSTR+A+ E SSS+SS A FQRSMK QQE+S RL +DLA+ARADLQSIY + K G G+ + L +G+S ++ Q + T G G+ QD S A EGSHMARVLA LLG DST T + LSDA PPSLRLTDYP MLQAVFG GP +L A T R VM S+ Q G+T G +Q RS S +G+ R++R + H G A E + H A N G+G G G R D+ + SG V P S+S ++ AFRGYEAKSSLLQRWL E+ SP
Sbjct: 2 ERCAVILFASAEPVPAAVAFATAA--VEDSPWNNWDVQSMTGIVHITNETSKLSRETSDDEGPRADVNGRKHRNTIPQDTPIDQEKGSMARECVEIPSGSKDTAPAMDKVQNKSMQRGESKTRSESDFGGALEGQRQREEGTQKHVEEKTPSPREGVTSHSSPRANDALRDAGDMFRHEPSPLSSPEGL-VAPRMWEEIKGVELGETIDVD---GAHEARGSGSNYGGGGDTSCPRTPGDVRGDASGAGDDDPAPQLLNAGEAAPLATGKRPEAATRQQPEDRMHSTSG----MKTSS-APAATTDDVEAAGTN----VTSNEQHILTARSGNYSL--EQGDETRASEHQNTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQEAERAARTAEEDMARLLVKEKNREEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQDNALEAKDQLRLYVNDFLLWRNRAKHLEALLIELGHAPQ-PGLHAEIPLSYGSPSSKEHKRPEAPQRQNVDDKEQEVDPRTPVAKGPV--EYGGSMQAGDDANG-----LSIPEKYARYFETTTGGYSAPPSN--AAYSGTQRIEGSEL----DSETARAAAAWSTRAAMTELSSSSSSSQAYFQRSMKAQQEISFRLGKDLARARADLQSIYESNEAKARRGGGETSTYRASLPHETDGKSKAASSKRAQRNGT--GRKVGDSPSREDKRRVQDRTAVQGVATQDNVSAPAAS-FPEGSHMARVLAVLLGEDSTVNGTGVAGLSDASPPSLRLTDYPQMLQAVFGGGPEESLQDSAVT---HRRRVMVSEAPQR--GQTGQGYDEGRFPRQPRSHSR--TLTEGK-----RQARTILSHARADRRHGP---GATERSTHVHAHNRVCGGNGGTGNAGCRPQDKAAVEGASGIPDDVDPAGGRESRSLAT--AFRGYEAKSSLLQRWLGEKRSP 948
BLAST of mRNA_P-littoralis_Contig76.167.1 vs. uniprot
Match: D7FQ85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 2.540e-122 Identity = 375/1005 (37.31%), Postives = 485/1005 (48.26%), Query Frame = 1
Query: 139 KDKCAAVLFASTKSVAAAXXXXXXXXPADESPWKNWEVQPMMGTTR--------AREEINNKGPDTGVAGHSYRDFVPFETPTNENK-------VLLAGGVVAVA------EDSSRAFTVAQEFAEFPVGQTYVASGDENE--------------------------------KNMYMQKMSPLSSPEGFEIVTPLEKEGQGHKPGKKIIVERISGASPAGCSTHGGGGGGDISHPGTLRQNKETAQGT-EERVLPPLSTEAATAQFVTSKQHEAATSRQXXXXXXTSHRDMEKLRVSAPAPAASSDSRVSQQENKHPDALLGDQTCIAVQKGSNVLGASSGDTGASEEKTKAREQAKRLALEVARLRSTLRVTTSELNTERSTRVRLEDEWWRKMREWEEDRGRLITSKQEVERVSRSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAESAMNGVIKVQDRLIRALQAELEMITNARETAQENTREAKDQLRLYVEDFLHWRDRAKRLEAHLADPHHLHQRPELKVEAPPPWGSPPTQRXXXXEA--FQQTDGGGAMASVAVESSLAAASTSADHAGITQTGNKNNDGEVAELSIPEKYARYFETTTGRYTAAPTRGGVALFGSPRIARGDRKGRSEAEAATAAAAWSTRSALAECSSSASS---RVAFQRSMKTQQEVSARLERDLAKARADLQSIYAGSRTKHGGGCGDGNVMGIGLLRRKEGRSGEIMAEEVQNSTTHGGHSAGEFEQDK--------ASGYIAP--HIVEGSHMARVLAALLGADSTATATAMGRLSDAPPPSLRLTDYPPMLQAVFGEGPAVALPLLAPTTASERPVVMGSDRRQARSGETRLGGAG---------------VLKKQQARSW-SYGPVPADGRQKRWARESRDVKVHEEDGFGRGADKDAADELNMHPAATNMGSGACGGGRDADRWGEQNTSGGEAGVAPGVAEVSQSSSSTDAFRGYEAKSSLLQRWLAERVSP 2898
K++CAA+LFAS + V AA ++SPW NW+VQ M G +RE +++GP V G +R+ +P + P ++ + V ++ G A +++SR ++ +E G E +M Q+ SPLSSPEG + P+ +E +G + G+ I V+ GA +G + GGGGD S P T + A G ++ P L A TSK+ E AT +Q ++ ++ S+ APAA++D+ + N +Q + + G+ L GD + E K R+QAKRLALEVARLRS+LR TTSELNTERSTRVRLEDEWWR+M+EWEE+RGRL+ SKQE ER +R+AE +A+ AMNGV+KVQDRLI+AL+ ELEM AR+ AQ+N EAKDQLRLYV+DFL WR+RAK LE L D H Q P L E P GSP ++ EA Q D A +S A ++ G Q G DG LSIPEKYARYFETTTG + A P+ +P R SE ++ TA R F RSMK QQE+S RL +DLA+ARADLQSIY ++ K G G+ + LL +G+S +E Q T G + GE D+ G AP EGSHMARVLA LLG DSTA TA+ LSDAP PSLRLTDYP MLQAVFG GPA LP A T R VV+ ++ ++G+ G +KQQAR+ S+ V R +V+VH G G DA G R D+ + SG V PG E S S AFRGYEAKSSLLQRWL E+ SP
Sbjct: 12 KERCAAILFASAEPVPAAVAFATAA--VEDSPWNNWDVQSMAGIVHITNEMSKLSRETSDDEGPQADVNGRKHRNTIPQDAPIDQERGSMTRECVEISSGTKDTAPAMDKVQNNSRQRRESKTRSESNSGGALEGQRQREEDTQKHVEEKTPSPREGVTSHSSPRANDALRDASDMVRQEPSPLSSPEGL-VAPPMWEEDKGVELGETIDVDGAHGARGSGSNY---GGGGDTSCPRTPGDVRADASGAGDDDPAPQLLHAGEAAPLATSKRPEVATCQQPEDRIHSTSG----MKTSS-APAATTDNVKAAGTN----VTSNEQDILTARSGNYSL--ERGDETWASEHQKTRDQAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQDNALEAKDQLRLYVDDFLLWRNRAKHLEGLLIDLGHPPQ-PGLNTETPLSCGSPSSKEHKLPEAPHRQNVDDKEQEA----DSRTPVAGEPVEYGGSRQAG----DGAKG-LSIPEKYARYFETTTGGHPAPPS--------NPAFPGTQRTEASELDSETAXXXXXXXXXXXXXXXXXXXXXXRAYFHRSMKAQQEISIRLGKDLARARADLQSIYESNKAKARRGGGETSTCHGSLLHETDGKSEAASSERAQGIGT--GRNGGESPSDERRVQDRTAVQGVSAPAASFPEGSHMARVLAVLLGEDSTANGTAVAGLSDAPTPSLRLTDYPQMLQAVFGGGPAAPLPDSAVT--HRRRVVVSEAPQRGQTGQGLYGDDDEGRFPTQHPSRSRTLTEEKQQARTTQSHARVDRRHGPGATGRNCTEVQVHNRTCGGNGGRGDA-------------------GCRPQDKAAVEGASGIPDDVDPGGGE---SRSLDRAFRGYEAKSSLLQRWLGEKKSP 955 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig76.167.1 >prot_P-littoralis_Contig76.167.1 ID=prot_P-littoralis_Contig76.167.1|Name=mRNA_P-littoralis_Contig76.167.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=966bp MADGGSRAQILKQRALKVTWKPDGRPTELELLTAFRLVGAIVSVQIKDKCback to top mRNA from alignment at P-littoralis_Contig76:452248..456450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig76.167.1 ID=mRNA_P-littoralis_Contig76.167.1|Name=mRNA_P-littoralis_Contig76.167.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4203bp|location=Sequence derived from alignment at P-littoralis_Contig76:452248..456450- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig76:452248..456450- >mRNA_P-littoralis_Contig76.167.1 ID=mRNA_P-littoralis_Contig76.167.1|Name=mRNA_P-littoralis_Contig76.167.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2898bp|location=Sequence derived from alignment at P-littoralis_Contig76:452248..456450- (Pylaiella littoralis U1_48)back to top |