mRNA_P-littoralis_Contig76.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.94.1
Unique NamemRNA_P-littoralis_Contig76.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.94.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.590e-55
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 IKKKEELIIVDTLLEEGLNDGDLPHLCLDKTLLMNSGHDAFGPKDLDDVLTSVRRAKRKLNKLSVMFNGTGGQGIGSFIAKDSTVREVTLLCERLSNDSVQSLAEALGT 327
            IKKK ELI+VDTLLEEGLNDGDLPHLCLDKTLLM SGHD  GPKDL+DVLTSVRR KRKLNKLSVMFNGTGGQGIG+FIAKD++VREVT+LCE LS+DS+QSLAEAL T
Sbjct:   23 IKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALET 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI2.590e-5586.24Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:214770..221185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size981
Hectar predicted targeting categoryother localisation
Exons9
Cds size981
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.94.1prot_P-littoralis_Contig76.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 214770..221185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791564.2023926-CDS-P-littoralis_Contig76:214769..2148961680791564.2023926-CDS-P-littoralis_Contig76:214769..214896Pylaiella littoralis U1_48CDSP-littoralis_Contig76 214770..214896 -
1680791564.2169464-CDS-P-littoralis_Contig76:215392..2154761680791564.2169464-CDS-P-littoralis_Contig76:215392..215476Pylaiella littoralis U1_48CDSP-littoralis_Contig76 215393..215476 -
1680791564.229926-CDS-P-littoralis_Contig76:216014..2160981680791564.229926-CDS-P-littoralis_Contig76:216014..216098Pylaiella littoralis U1_48CDSP-littoralis_Contig76 216015..216098 -
1680791564.2413008-CDS-P-littoralis_Contig76:217091..2171751680791564.2413008-CDS-P-littoralis_Contig76:217091..217175Pylaiella littoralis U1_48CDSP-littoralis_Contig76 217092..217175 -
1680791564.2530713-CDS-P-littoralis_Contig76:217440..2175241680791564.2530713-CDS-P-littoralis_Contig76:217440..217524Pylaiella littoralis U1_48CDSP-littoralis_Contig76 217441..217524 -
1680791564.2687495-CDS-P-littoralis_Contig76:219034..2191181680791564.2687495-CDS-P-littoralis_Contig76:219034..219118Pylaiella littoralis U1_48CDSP-littoralis_Contig76 219035..219118 -
1680791564.2805696-CDS-P-littoralis_Contig76:219474..2196471680791564.2805696-CDS-P-littoralis_Contig76:219474..219647Pylaiella littoralis U1_48CDSP-littoralis_Contig76 219475..219647 -
1680791564.2909594-CDS-P-littoralis_Contig76:220291..2204361680791564.2909594-CDS-P-littoralis_Contig76:220291..220436Pylaiella littoralis U1_48CDSP-littoralis_Contig76 220292..220436 -
1680791564.3067603-CDS-P-littoralis_Contig76:221069..2211851680791564.3067603-CDS-P-littoralis_Contig76:221069..221185Pylaiella littoralis U1_48CDSP-littoralis_Contig76 221070..221185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.94.1

>prot_P-littoralis_Contig76.94.1 ID=prot_P-littoralis_Contig76.94.1|Name=mRNA_P-littoralis_Contig76.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=327bp
IKKKEELIIVDTLLEEGLNDGDLPHLCLDKTLLMNSGHDAFGPKDLDDVL
TSVRRAKRKLNKLSVMFNGTGGQGIGSFIAKDSTVREVTLLCERLSNDSV
QSLAEALGTNRTVTKILLGGKELQDHAAGNLGRALKATSSLQHLTLFNCG
FRDIGAELLASGLSANTTLRRLDLTHCGIGGDGAAAISRAVQRHPTLAYL
NLKNNDVGARGSAALADALRGNFVVLELILGSNCVGNGGASALASAISVN
TTLAYLDLGANGISDNGGVAFAEGLARNASLRHLDLRTNAIGQDTCERVR
VGWSERNAKRSMQLGQPWHDGLSLPF*
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mRNA from alignment at P-littoralis_Contig76:214770..221185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.94.1 ID=mRNA_P-littoralis_Contig76.94.1|Name=mRNA_P-littoralis_Contig76.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6416bp|location=Sequence derived from alignment at P-littoralis_Contig76:214770..221185- (Pylaiella littoralis U1_48)
ATCAAAAAGAAAGAGGAGCTGATCATCGTCGACACTCTGCTGGAAGAAGG
CCTCAACGACGGGGACTTGCCTCATCTGTGCCTAGACAAGACACTCTTGA
TGAACTCCGGACACGAGTAAGTGGGTCATAAGAATAGGCAGATAATTTTC
GCAGAAAAATGGAGATGTGACTGTAAAGCCCATGGTCGTCGAACCATGCT
TAAGTTGGCCGTGAGTTTGATGATGATGATCTCACGGGCGGGCCCGTCGT
TATCAGAAAGCACCGATAAAGGTCCTACGTTAAACTACCACATCATGCCT
CAATGCTCGCAGAAGGCACCGATGACGGCGAAAAACTATTGAACCCCCGT
TTAAATTCACTCTCTGTTCGGGCACACACACAAAAGCGGTAGCTGCATGA
AGTATATAGAGCGATATCAGCTCGGACTAGCGTGGGTGGGACCTGCTCGG
AAAAAGCAGTGAAGACGCTGCGTGGTTTTATTTAGCACGGGTCTCAGGGT
TTGAGCAGCGTTTGGTTCAACTGCACGTTGCAAACAAGCGGAGTCTGGCG
ACTTCACCAGTAAGGAACTCAACCTGGACGGACGGGGTCTCAACACGATC
AACAGGTCTACGGCAAGCATCTGCTTTGACCAACAACTTCCGGTTGTGTC
GAATTTCCCTTCTGTACACACCTTGCAATCGTAATGTGTGCCCGGCTGGC
TCCCAAACTGTTGACGACACCGTATGTTTACTCTTTCTCCTTGAACCAGC
GCGTTCGGGCCGAAAGACCTAGACGACGTCCTGACAAGCGTCCGAAGAGC
GAAGAGAAAACTCAATAAGCTTTCTGTCATGTTCAACGGCACTGGGGGAC
AAGGGATCGGCAGCTTCATCGCCAAGGATTCGACTGTTCGTGAGGTTAGA
AGAGAAACACACAATGGCCTGCATCGAATGTTAAGTGCCCGACGGAGTAG
TCGTCAATGGTGAAGTGAATGCGTTCAACCTACAGCACAGGTAGGGTGGC
AGTTCTGAAATGCGCTGCATCATGACTCTTTAGACGCGCGGTTTTATGTG
ATAGGAACCCGGGTGACTGGCACTTCTACTGTGCGAAGGCCTGTTGCAGC
AGGTGCACGTTGTGGATGGACTTATCCAGTGGATAATTCCATCCAACGAA
TAGCAGGACCACTCGGAAATACACGTGAACTAATGTCCGTTCGCGCTGAT
TGATGAGCATGCAATCCTAAACCCTTCCTTTCCCGTGCACACGCGCTACT
GTAAGCACTGTATGATGTTGCGTGGTGTGACCAGAAATCGTGATAGTCGG
TCGTTCACGTGTGGTTGTCTATATCGAAGGATTCTTCGAAACAAACGCGA
ATGCAAAGCTCCCCTTGCGTAAATGAGTGCAGCTACCTGGGTTGCTAGCG
GGAGCGTTCTCGAGTACGAAAATGAGCGGAATCCTGCCCTCCCCCCCCCC
CCCAACGCCCCCCCGCCGCGTGTGCTTGCGCGCGAAACGGGAACATGACA
TATGGCATGGCGTGGGATAACACGCTAACACTACATAGGTGACCCTCTTG
TGCGAGAGACTATCGAATGACTCCGTCCAGTCTCTCGCAGAAGCACTGGG
GACCAACAGAACGGTTACCAAGATTTTGCTGGGGGGGAAGGAGCTGCAAG
ATCACGCAGCTGGAAATTTGGGGAGGGCTCTGAAAGCGACCTCCTCGTTG
CAGCACCTGACGTGATTAAGTCATGATCCTGCTGTCTACCTCGCTTTGTG
ATACCTCTCACTTCATGCTCTGAAGTACATCCAATCAACGCTGTTGTAAT
TAACACCCTGCATATGCTGACCTCACCTGATTGTCTTTGTGTTTCCTTGG
GGTGCTTCCCGCATTCCCACAGCTGTAAGGACAGTATGGAAAAGTTGGCC
ATACGACTACCGTACATTTGTTTTTGCTTTCCACCCACCTACTCGATCGT
ATCGTAGCTTGTGTGATGCTATTACTACAACAGCATTATGAGCTGTTTTT
ATCTCTATAATACCTCGATGCTTTTGATATATTTACCCTCCGTTCACTGT
ATGTACCTGTCGCGCAGATTGTTTAATTGCGGGTTTCGGGACATCGGCGC
TGAGCTATTGGCCTCCGGGCTATCTGCCAACACAACATTGCGGCGGTTGG
AGTGAGTCAAGACACTATGTGTACCCCCCCCCAAAAGAGTACTGTTATTA
TGTCTGTCTTCCGTGTGTATTTGCTTTACGTACGCTCCAGTTGCTTGTTG
TGTGCCTGTGTGTTCACATCAGTATCATGGAAAAATACTTGCCAGGTGTA
ATGAGAGCTTTTAGGAGAGAATTTTGCGCTCGGTACTGTAACGTTAAACC
CACCGCACGATTTTTTTCTGGGTCTTTCGGAGGAATGGTAAGGGCAAACG
TTCCAATTGTATAACGCGGGATCGGAACGGGACGGGAAGGCGGGAAGGCA
GTTGGCTGGTGGGATGGGATGGGACTTACATGATTTTTCGGTGGGACGGG
AACGGTCGGGAAACAAGTCTACAAATAAGTTGGGAAACGGTCGAGAAACA
AGTCGGGAAGCAAGTCGGGAGGCACAGATATCGATTCATGGCTAGCATCA
CAACCGTTTCAGCGTTTCTTGTATCATGTGTGACTCAGCAATCCTGTGTT
TCACCAACGCCTGTCCACATACTTGTTTTGCATTCAGCAGTATGATGGCT
TTCTTCATGCATGATCAACTAGATAGAAACGAAGTCGACTATATCGGCTG
CCTTTGACAAATAGGTACGACGGCAGCTGCCGCCCCCCCTCTTTTTTCAA
TGAATCTCGATTTGATTAATAATCTTCCAGACACGTCCAAAACAGCACGC
GAAAAGAAAACAATTATATTTCACCATTTGCCAACCTGCCACACACCGCT
TTCCCCCTTCCCCGTCAAAGTCCGAACAACGATTAGAAGAGTGAAATAAA
GCACTTTAAACCAAATTTTAACCAGAGCTCCGGTGATGATTGCGTCTAAC
TGCCGACAACTCATCATTACTAGCTACGGGCGTGGGGGATGGGAAGCGAG
CGGGTGATAGTGGCGCGGGAAGAGAGTGGGACGGGGACAAAATATGTTCA
GGCGGGACGGTAGATGTGGGAACAGAAATTTGTAACGGGAACGTTCGGGA
AATCTCGGGGTGGGAATGAAATATCGCACGGTGCAGTCCCGTTCCCGTAC
CGTACCGACCACTTTTCACCGTCCCCACCTTTACCGCGCGGAAGCCTGAT
TTTTTCTAACGCCGCGTAGATGGGCGAAACGAGTTTGAAATTTCAGCCTC
TGCTGCGATCGCATATTACCCGAAAATCGCCCTGCGCAATGTACAGAGCC
AGTCGGCTTGCGGCTACCCTCTTGCCAGAGCTGTCGCTGTCGAACACAGA
ATAAAGCTGCAGAATAGAGGGCAGTAGCAGCAACAGCAGCAGCAATAACA
CGACGTGAAAGTGACAAGAACCATGAGAGCTGCAATTCTGCACCAAAAAT
AAATCTACTCCCCGCGAAATACTCAGATTCCACCGGTGTTGCACCAACTC
TCTGTATTTCCACTCGGTTATATAATCGGGCCAACCCTCCCCCAACCCCC
CATACCCCGCTTCCGGTCCCTTTTTTTTGTCTGCAATCTGGTATGTATTC
GAACTGTTTAGTCTGACCCACTGTGGCATCGGGGGGGATGGAGCTGCAGC
AATTTCTCGTGCGGTGCAGCGGCACCCGACCTTAGCTTACCTCAAGTGAG
AGTGAGCGTTCGCTCCGGACCGCCGTCCCTGTTTTGCGTGCGGATCGAGC
TTTCGAGAAAAACAAAACAAAGTCAGAAGAAAGCTGACTACATACAGTAT
TCAACAGATGGAGAGAGAAGCGGGGGGAAGAGGGGAAAAGTCGCGAGGTA
ATATTCCTTTACTGATGTAGGTGGAGGACGGACACAAAAATCAGACCCCC
CCAAGGATCAAAACTTGCGCGTGTAACTAATTTTGCGCCTGATGACAAAA
CAAAGTGCAGCCTCAAGAACAACGACGTAGGAGCTCGCGGTTCTGCCGCC
TTGGCGGACGCCCTGCGAGGAAACTTTGTGGTTCTGGAGTTAATGTGAGA
GCACCGCCCTCCCTCGCTGGCGGTCGTCTGTGCATATCACAGCCACCCTC
TTGTAGCCGCCCTCCCCCAACGTACGCATGCACATATTATGCAGCAATGT
AAAAAGAGGAAATCCGTCCTCGACAGACGTTGTGGGAATGTATCCCAGAT
GAAGGGGACCTCCTCCACGCCCCCCCCCCCCCCTAAGTGTGGAGGCTTCG
AGGGGTAACCGGAAACCGACCGGCTGCAGTAGCGGCGAGTCAAATTCTCC
TTTACTTCACAATCCTCTGGACTCCGTGTTGTGTCGCGGGCCAACCACTT
TCGCCACGTCGTATGCCTCAGAAATTCCCGCAAGTTCGAATAATCTGCTT
TAAGGGCAAGTGGCCATCGGTGGGATTTGAACCCAGGTTTGTGGCCATCT
GATCGCGACGCCAATATAAAAGAGGGACTGCGTCCTCGACAGACGTTGTG
GGAAGGTACCCCTTATGAAGGGGATCTCCTCCACGGCGATGCGTATAGAC
GTGTGTTGCCGTCACTTCCGAACCAGTTGTGCTTTGTTTGTCCGTGGCAA
GGCGGAGATAATTATAAGACGTCGCGGCCGACTGATCAATCAAGCAACGG
CAGGTGGCCGCCTCAGCTCCGCACATACGAGAAGCGACCACAAAGCATAG
ATGACCGAGACGGTACCTGGTACACAGTAGTGCTCCGCCAAGTGGTGCCG
CCACCACCTATTTATTGGCACAGGGCAAACAAGCACGGAGAAACGAGCTC
TCCCCCCCCCCACTGCCCCCCTCCCTCAACCCTCCCCTGATCTAGAGGGA
GGTGTCTGGTCGACGATCCAATGGCTAGAAAGTAAAAGACCGAATGCATT
CCCTGCCAATGCTGGTGACATGCTGGTGGCCTAAGACCGAGTACATGAAA
CCAGCCAAAAATCACCCCCTATTCCCCCGTCTATCCCTCCGCCCCACCTC
TTGCCGACACCGCTGATTCCCGATTTCATCTGAGCAGTCTCGGATCGAAC
TGCGTTGGGAACGGCGGCGCCAGTGCCCTGGCGAGTGCAATTTCAGTCAA
CACGACGCTGGCATATCTAGAGTGAGAGCTGGTGGATGACTGAGTGAAAA
AACGACAACACACCAGAAAGCAAGGCACAGAACTGGGTTGTTCTGGTCGA
TTTGGCTTTGCTCGTACTGGAGACTTTGAATGAATACTTCGCATGTTTTT
TTCATTTTCGTTGTACGTGGTGGCCAACTGTTGGTTACCACCTCTTGTTG
AGACGAGGGGTTGAGAAACGAACAAAACCAGAGCTTTGCAGAGGTTACCG
TTCTTGCTCTGTGCATGGGTCGGGTCGTAGGAAATAAATACTTCGAGGTT
TTAAACATTACGTTTTCTGTGTCTCATGCTTGCGAAAACACCATCGAAGG
ACTTCTCGCCGTGTGTGTACTCATGTGTATGTGTTGTGTGTGTTGTGTGT
GATGTCTATGTCTTCCCATTCGGTCTACCTGACAAGCCTGTATCCAAAGC
TTGTTTCGCGTTCTTTGCTTTCCCCTCGACCACTTCGTGTTGAAATCGGC
CCACGCCTACCAAACACCACCAAACGAACGTCTTTTGGCAACGACGGATG
GGGGGAAAGCTTGGGAGCCAACGGGATCAGCGACAACGGAGGGGTGGCTT
TTGCCGAGGGCCTCGCGCGAAACGCGTCACTAAGACATCTTGAGTGAGCG
ACCCGACAGGCACCGCTGAATCGGGGCCGACTAGCAATAGATTCCCAGCC
CGTTAGTTTCCAACAACACCAATGTGCTAAACACAATCGATCGATCTCAC
CGACCATCAGCAGATGAACCGTCCCTTACATCTGTAAGAATGGCTTGACA
GGATCAACAACGCGCAGTAAAAACCGCATTGTGAGCATTATGTGAGGTTT
TTCACTCTATTTCGAGAATGGGGACCATGAGACGTTTCACGAGGCATTTT
TAGTAGACGTTTCACGAATCTCCATGGGATATTGAACGGAGCCGACGTAG
TTTCACGAGTATCTGCCGGCGTTAACGTTTGATTCGTTTCCCTTTTGCAT
GTGCCCGGTCACGATTAATAGAGAGATGTTCTCGCGTGTTTTTACCAAGG
CCCTCCTTCGAGGGCGGCGCCTCTAAGACATGTGGCGGTACTCCAACATC
ACCCCCGCCCCCGCCCACGCAAACACCGGCCCTTTCCAGTCTAAGGACAA
ACGCCATCGGGCAGGACACTTGTGAGAGAGTCCGTGTCGGTTGGAGTGAG
CGGAACGCCAAGAGAAGCATGCAGCTCGGACAGCCTTGGCATGACGGGCT
CTCTCTGCCCTTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:214770..221185-

>mRNA_P-littoralis_Contig76.94.1 ID=mRNA_P-littoralis_Contig76.94.1|Name=mRNA_P-littoralis_Contig76.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig76:214770..221185- (Pylaiella littoralis U1_48)
ATCAAAAAGAAAGAGGAGCTGATCATCGTCGACACTCTGCTGGAAGAAGG
CCTCAACGACGGGGACTTGCCTCATCTGTGCCTAGACAAGACACTCTTGA
TGAACTCCGGACACGACGCGTTCGGGCCGAAAGACCTAGACGACGTCCTG
ACAAGCGTCCGAAGAGCGAAGAGAAAACTCAATAAGCTTTCTGTCATGTT
CAACGGCACTGGGGGACAAGGGATCGGCAGCTTCATCGCCAAGGATTCGA
CTGTTCGTGAGGTGACCCTCTTGTGCGAGAGACTATCGAATGACTCCGTC
CAGTCTCTCGCAGAAGCACTGGGGACCAACAGAACGGTTACCAAGATTTT
GCTGGGGGGGAAGGAGCTGCAAGATCACGCAGCTGGAAATTTGGGGAGGG
CTCTGAAAGCGACCTCCTCGTTGCAGCACCTGACATTGTTTAATTGCGGG
TTTCGGGACATCGGCGCTGAGCTATTGGCCTCCGGGCTATCTGCCAACAC
AACATTGCGGCGGTTGGATCTGACCCACTGTGGCATCGGGGGGGATGGAG
CTGCAGCAATTTCTCGTGCGGTGCAGCGGCACCCGACCTTAGCTTACCTC
AACCTCAAGAACAACGACGTAGGAGCTCGCGGTTCTGCCGCCTTGGCGGA
CGCCCTGCGAGGAAACTTTGTGGTTCTGGAGTTAATTCTCGGATCGAACT
GCGTTGGGAACGGCGGCGCCAGTGCCCTGGCGAGTGCAATTTCAGTCAAC
ACGACGCTGGCATATCTAGACTTGGGAGCCAACGGGATCAGCGACAACGG
AGGGGTGGCTTTTGCCGAGGGCCTCGCGCGAAACGCGTCACTAAGACATC
TTGATCTAAGGACAAACGCCATCGGGCAGGACACTTGTGAGAGAGTCCGT
GTCGGTTGGAGTGAGCGGAACGCCAAGAGAAGCATGCAGCTCGGACAGCC
TTGGCATGACGGGCTCTCTCTGCCCTTTTGA
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