mRNA_P-littoralis_Contig75.161.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.161.1
Unique NamemRNA_P-littoralis_Contig75.161.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.160e-26
Identity = 76/186 (40.86%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   64 DGGRLWGRFDEAFRVMKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYARNATSGEAPVQEDDLVESLPGGGGAEVGRSRWRRRRTLEGKVGGKLHRKSLDGGAAEKQ*GEAGEIDGEADGIKHER--EDGDGSSEGL-----SGEAGESIEYPARPTNWMSQYLITYVLSEGPVTARVP 600
            +G +LW +FD A   MK+  NPIWDR+V+GQPG NLPSG T D AI NLLDGLY++   S E+PVQEDDLVES P   G                   GK   +  DGGA  +   +     G+   IK ER  +D D S           +AG+  EYP RP  WM   L+ Y     P  +  P
Sbjct:  116 NGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADG-------------------GKAPEEKADGGAPNEDKPDQEGEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDP 282          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.520e-20
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
            LIGRPS SE PDLRTAR TSGP+ R GK+K   + +PS+S                  +L S+AIR FAGAGE QSRA+VKK+ AA+ A  AQE+ R  + +HT  LV A   L  AVV++Q LDEEAA RAR
Sbjct:   10 LIGRPSSSEDPDLRTARKTSGPKGRGGKQKAK-KGSPSTSDGSGSETSGAYTDV----DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRAR 137          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.150e-20
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
            LIGRPS SE PDLRTAR TSGP+ R GK+KV    +PS+S                  +L S+AIR FAGAGE QSRA+VKK+ AA+ A  AQE+    + +HT KLV A + L  AVV++Q LDEEAA RAR
Sbjct:   10 LIGRPSSSEDPDLRTARKTSGPKGRGGKQKVK-NGSPSTSDGSGSETSGAYTDV----DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 137          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.330e-18
Identity = 65/129 (50.39%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAA 953
            LIGRPS SE PDLRTAR TSGP+ R GK+K   + +PS+S                   L S+AIRTFAGA E QSRA+VK +  A+ A  AQE+ R  + +HT KLV A + L  AVV++Q LDE+AA
Sbjct:  111 LIGRPSSSEDPDLRTARKTSGPKGRAGKQKAQ-KESPSTSDGSGSETSGAYTEV----GLSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.790e-18
Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQR---MSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
            L+GRPS SE PDLRTAR TSGP+ R GK+K   + +PS+S                  +L S+AIR FAG GE QSRA+VKK+ AA+ A  AQE+    R    +HT KLV A + L  AVV++Q LDEEAA RAR
Sbjct:  136 LVGRPSSSEDPDLRTARKTSGPKGRGGKQKAK-KGSPSTSDGSGSETSGAYTEV----DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.470e-17
Identity = 74/169 (43.79%), Postives = 98/169 (57.99%), Query Frame = 3
Query:  567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRARELAAEDRRASKIRNLKTSEGNMTSRSRSPPSTSPYV 1073
            LIGRPS SE PDLRT R TSGP+ R GK+K   R +P +S                  +L S AIR FAGAGE++SRA+VKK+  A+ A  AQE+ R  + +HT KLV A +    AVV++Q LDEEAA R+    A   + +KI +L+   G  T R+    + S Y+
Sbjct:  152 LIGRPSSSEDPDLRTTRKTSGPKGRGGKQK-SKRGSPGTSDESGSETSGAYTDV----DLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLRGEVGVHTGRAEGDGTASLYI 315          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.990e-14
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  567 LIGRPSDSEGPDLRTARVTSGPRIRLGKRKVGLRSAPSSSXXXXXXXXXXXXXXXXGGNLDSTAIRTFAGAGEAQSRAKVKKKTAAMHAIVAQEKYRLQRMSHTEKLVGAAQTLLNAVVAKQRLDEEAACRAR 965
            LIGRPS SE PDLRTAR TSG + R GK+    + +PS+                   +L S+AIR FAG GE QSRA++KK+ A + A  AQE+ R  + +HT KLV A   L  AVV+ Q LDEEAA R R
Sbjct:   97 LIGRPSSSEDPDLRTARKTSGLKGRGGKQNAK-KGSPSTIDGSGSETSGAYTEV----DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.780e-11
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   67 GGRLWGRFDEAFRVMKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYARNATSG--EAPVQEDDLVESLPGGGG 300
            G +LW RFD   R +K+ YNP+WD FV GQPG+ LPSG   + AI  LL+G+Y   + +G  E P++   L E   G GG
Sbjct:  123 GKKLWKRFDNIMRALKKFYNPVWDSFVEGQPGDQLPSGSQDEDAIEYLLNGVYHTISNTGNEENPIE---LEERRGGEGG 199          
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.250e-6
Identity = 52/201 (25.87%), Postives = 85/201 (42.29%), Query Frame = 1
Query:   40 WREIRFSKDGGRLWGRFDEAFRVMKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYA-----RNATSGEAPVQEDDLVES-----LPGGGGAEVGRSRWRRRRTLEGKV--GGKLHRKSLDGGAAEKQ*GEAGE------IDGEADG--------IKHEREDGDGSSEGLSGEAGESIEYPARPTNWMSQYLITY 564
            + E +  KDG ++W R+ +AFR +++D NP++D+ +  QPG   PSG      +  LL  L+      +N T  E   +E + + +       G               + +G+V  G +      D G  E+    AG       IDG  DG        ++ E+    G  +    E    ++YP RP NWM  Y +T+
Sbjct:  133 YEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGGTPPSGEQYADQLDELLQALWEYQCREKNKTV-EVTAEEKEFLRARGPSAAKGXXXXXXXXXXXXXLSSTDGEVVQGTEKEGGGADAGKDEEVAAGAGRAAGSEGIDGSGDGGAGREGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTF 332          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE7.160e-2640.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JU95_9PHAE3.520e-2052.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M7_9PHAE4.150e-2053.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE2.330e-1850.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE2.790e-1850.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK1_ECTSI3.470e-1743.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPB5_9PHAE1.990e-1448.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI6_ECTSI2.780e-1146.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM89_9PHAE2.250e-625.87Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:586962..589433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1312
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.1273606-UTR-P-littoralis_Contig75:586961..5870091680791553.1273606-UTR-P-littoralis_Contig75:586961..587009Pylaiella littoralis U1_48UTRP-littoralis_Contig75 586962..587009 +
1680791553.1379504-UTR-P-littoralis_Contig75:587662..5877221680791553.1379504-UTR-P-littoralis_Contig75:587662..587722Pylaiella littoralis U1_48UTRP-littoralis_Contig75 587663..587722 +
1680791553.1716938-UTR-P-littoralis_Contig75:588529..5894331680791553.1716938-UTR-P-littoralis_Contig75:588529..589433Pylaiella littoralis U1_48UTRP-littoralis_Contig75 588530..589433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.1477973-CDS-P-littoralis_Contig75:587722..5877541680791553.1477973-CDS-P-littoralis_Contig75:587722..587754Pylaiella littoralis U1_48CDSP-littoralis_Contig75 587723..587754 +
1680791553.159522-CDS-P-littoralis_Contig75:588261..5885291680791553.159522-CDS-P-littoralis_Contig75:588261..588529Pylaiella littoralis U1_48CDSP-littoralis_Contig75 588262..588529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.161.1prot_P-littoralis_Contig75.161.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 587723..588529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.161.1

>prot_P-littoralis_Contig75.161.1 ID=prot_P-littoralis_Contig75.161.1|Name=mRNA_P-littoralis_Contig75.161.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MKRDYNPIWDRFVRGQPGNNLPSGHTSDYAIANLLDGLYARNATSGEAPV
QEDDLVESLPGGGGAEVGRSRWRRRRTLEGKVGGKLHRKSLDGGAAEKQ*
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mRNA from alignment at P-littoralis_Contig75:586962..589433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.161.1 ID=mRNA_P-littoralis_Contig75.161.1|Name=mRNA_P-littoralis_Contig75.161.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2472bp|location=Sequence derived from alignment at P-littoralis_Contig75:586962..589433+ (Pylaiella littoralis U1_48)
CTGGGTGGCTCACCGTGCATTTGATGGGGTGCACTAAACTGGAGGGAGGT GAGAAAAGACAAAATGTACGGTATGTGGGCGAAACAAGGGCGATAGACAG ATGATACGACAGCAGCACGTAGTAGCTCCTCTGCCAGTACAGCAGACGTA CGATACGCGTCACAGCGCTTCCCGCCTACCTACTACAGCAGTAGCTCTTC TGCCTGTACAGCAGCAGTTGTGCTTTGAATCAGAATCGTCTGGTTTGTGT TTCAGTGTCGTGACACAGCAGTAGTAGATATTCTGCCCGCACAGCAGGTC CACTTCGAAATAGATGATACATCTTATACGAAGTGTGATACTTCGAAGTA CCCCCTTCCGGCTGTGCAGCAGTAGTCCCTGCGGCGTGTACTAGTAGTCG ATCTTCTCCCTGTTCTCCATCAGTACTTGTTCTGCCTGTACCAACGCAGT ATGGTTATACCTCTGCCGTAAACGCACGCTACATGAAAAGACTGCTGTAG GCAGGACGCTCTTGTTGATGTCTTTATCGAGTGATTCGCCCGTTGCGCAG CGTACTCACACCACACCGGACCATCTTCCCAGCGTTAGAATAGATGATGG CGCCGTTGCCATCGTGTTTGCTGCTGCTGCGGTGCAAGCGCAGTATTTGG AAGAGTGCCCCCTGACGGTAACATCCTGCTTGTCTCTGTCGTGCTTCTCA GATCCGATTCTCTAAAGACGGGGGGAGGCTGTGGGGTCGTTTTGACGAGG CGTTTCGCGTCATGAAGCGGGACTACAACCCAATCTGGGACAGGTATGAT GGGGTGGTGTTGTGACAGTAGAGAGATTTCGTCCTCCGACGCCTCGAGTA ATAATTTAGTTCTGCTGTGCATGGTGTTGAGTACATGTTGAGTGGGTATA TGTACACCGTTACCGCACGAGGATCGAAGTAATTTTTTAGAACTCGAAAT GACATGATGCGCTCTGTGTAGAGGCGTGAGCTTTACTAAATCGGGAGAAT TTCAACGGACACATATTTGCACGAGTACAGCAATTCAAAACGATAGCCAA TCGGCCCAAGGCCCACGACAGTTATGTCCGTATTTTGTCTGTGACGACGT TATCGCATAAAATTGAGCACGGCAACTAAACGCTTGAAACAGCTACAAAC GCAGGGTGTAGAACACAGCCTTCAAGGCGGCCAACATCACAAACTTTCTC TATTGCTGTATAGATGTAGTGCAGGGAATCACAAACACCTCTGCTGTACA GTTCAGGAATAGGGAGTCTTACGATGGTTCATCCTTCCCTCCTTGCCCAG ATTCGTCAGGGGCCAGCCGGGGAACAACCTGCCCTCGGGCCATACAAGTG ACTACGCAATCGCCAACCTACTCGACGGGCTGTACGCCCGAAACGCAACC TCTGGAGAAGCCCCCGTGCAGGAGGACGATCTCGTGGAGTCTCTTCCTGG CGGAGGTGGGGCGGAGGTGGGGCGGAGCCGGTGGCGGAGAAGGAGAACGC TGGAGGGGAAGGTGGGAGGGAAACTTCACAGGAAAAGTCTCGACGGAGGG GCAGCCGAGAAACAGTAGGGCGAGGCAGGCGAGATCGATGGGGAGGCGGA CGGTATCAAGCATGAGCGGGAAGATGGCGACGGTTCTTCCGAAGGTCTGA GCGGCGAGGCAGGCGAATCCATAGAGTATCCGGCAAGGCCCACCAACTGG ATGTCTCAGTATCTGATCACCTACGTCTTATCGGAAGGCCCAGTGACAGC GAGGGTCCCGACTTGAGAACCGCCCGGGTAACGAGTGGCCCTCGAATTCG TTTGGGGAAGCGGAAGGTGGGGTTGAGGTCTGCGCCAAGCAGCAGCAGCA GCAGCAACGAGGAGAGCGAGACTGACTCGGGCAGCGCGGGGACCGGCGGC AACCTTGACTCAACGGCCATCCGGACGTTCGCCGGCGCCGGTGAGGCTCA AAGCCGAGCGAAGGTCAAGAAGAAAACCGCGGCGATGCACGCAATAGTCG CTCAAGAGAAGTATCGCCTACAAAGAATGAGCCACACAGAAAAACTGGTA GGTGCCGCACAGACGCTGTTGAACGCCGTTGTCGCGAAGCAGCGTCTGGA CGAAGAGGCTGCCTGTAGGGCGCGCGAACTGGCAGCTGAGGACCGAAGGG CGAGTAAGATAAGGAACCTCAAAACCTCAGAGGGCAATATGACTTCGCGA TCCCGGAGTCCACCGAGTACTTCGCCCTACGTGCCGCAATCCAGTTTGCA TACCGGCAACCCCTGACCGACTTCTTGGACAAGCCCACCTCGGCTGCGAC AACACCTGCGTCAGGAGCTGGAGGGGCTTCCCCCCGATTTCAAATGTGGC ATTGTCTGTTGCCGCAACGCCTGCTTCTGCTGTCATGCCGGGTTTTTCGA TGGTCGGTGGAGACGATACGGCATCGAGCGCGGTTGGTACCGGGGAGGTT GCTATCTGAGCGTCTGAGCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:586962..589433+

>mRNA_P-littoralis_Contig75.161.1 ID=mRNA_P-littoralis_Contig75.161.1|Name=mRNA_P-littoralis_Contig75.161.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig75:586962..589433+ (Pylaiella littoralis U1_48)
ATGAAGCGGGACTACAACCCAATCTGGGACAGATTCGTCAGGGGCCAGCC
GGGGAACAACCTGCCCTCGGGCCATACAAGTGACTACGCAATCGCCAACC
TACTCGACGGGCTGTACGCCCGAAACGCAACCTCTGGAGAAGCCCCCGTG
CAGGAGGACGATCTCGTGGAGTCTCTTCCTGGCGGAGGTGGGGCGGAGGT
GGGGCGGAGCCGGTGGCGGAGAAGGAGAACGCTGGAGGGGAAGGTGGGAG
GGAAACTTCACAGGAAAAGTCTCGACGGAGGGGCAGCCGAGAAACAGTAG
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