mRNA_P-littoralis_Contig75.157.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.157.1
Unique NamemRNA_P-littoralis_Contig75.157.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:564570..566540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.2553477-UTR-P-littoralis_Contig75:564569..5646731680791544.2553477-UTR-P-littoralis_Contig75:564569..564673Pylaiella littoralis U1_48UTRP-littoralis_Contig75 564570..564673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.2703612-CDS-P-littoralis_Contig75:564673..5648501680791544.2703612-CDS-P-littoralis_Contig75:564673..564850Pylaiella littoralis U1_48CDSP-littoralis_Contig75 564674..564850 -
1680791544.2814565-CDS-P-littoralis_Contig75:566507..5665401680791544.2814565-CDS-P-littoralis_Contig75:566507..566540Pylaiella littoralis U1_48CDSP-littoralis_Contig75 566508..566540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.157.1prot_P-littoralis_Contig75.157.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 564674..566540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.157.1

>prot_P-littoralis_Contig75.157.1 ID=prot_P-littoralis_Contig75.157.1|Name=mRNA_P-littoralis_Contig75.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
ASSLGVAQWRSCCLEGGPQTPCRDDGLGAGRSRVEGALDGNYEGARIGCG
GDESSRNRSSKHTYDRHFL*
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mRNA from alignment at P-littoralis_Contig75:564570..566540-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.157.1 ID=mRNA_P-littoralis_Contig75.157.1|Name=mRNA_P-littoralis_Contig75.157.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1971bp|location=Sequence derived from alignment at P-littoralis_Contig75:564570..566540- (Pylaiella littoralis U1_48)
GCTTCATCGCTAGGGGTCGCACAGTGGCGATCGGTGAGTGCATCATGTTA
GCTGTGCTGCTTCAGCGAAGATCGACATGTCCCTCGCCACTTTGATGTAA
GAAAAAATATCGTAAGCCGGTCGCCCCGCCCCGATGAATCAGAGGGAATC
ATACGCATCCTCGTAACCTCATGTCACTCACGACACATACTGCTGTATGT
AGGTCGTGAGTTTGAAACCCTGTCGGGCTCCTTTTCATCCACAAGCTAGG
AGTGTGAAGAAGCTTCTTCACCAGTCAAACAAGTATGAAATGTTCGACCC
GAAAAGTCGATAAGGGAAGGGGACGGCATAACCCTTCTCGCGATAAACAT
GAAGACAAGCACCGCCGTACGACTACAAGCATGCAAAAGGATATACTTCG
AAGTATAAGTGAAAAAGAAAACAACTCCAGTGTCGGCCTTCCTCTTGTGT
GATCCCGGTCGGCGCGCCCTATCTTGATGCAACGGTCGCCCCAGTGTTTC
AATTGATGCAACACTTCGACATTTTCTGACAGCTGCCGTGTGTCGTGACT
TCGGTTCTCGGTGTGAACAGGTTTACTTTTTCACACCATATCTGCAGCAA
TCGTATGGTTTTCGTCATTATTTCTGTTCTGGACGCTAGTCGGCACCTTT
CTGCGTATCATACGTATGTGGGCGCGTGGTAAGCCGGGGGTCACACAGGA
GAAAGGGCATAGTAGAATCTTTTTGACCCCACATTTCTTCTGCTGCAGTG
CTTGCCTTCATTTTTGTCGCGAAAATGGTAGTAGTGCCGTCGCAGCTTGC
CATCGTCGACATTCAAGTCGAATTCTGTAAATTCAAGAAATACATATGTT
TGAAATCCACCGCTAGGAACAGTTCGAGAAATGAAACGATTAAACGATGG
TCGAACTTACCGTTCAAATGTCAGGACGCTCCGAGAATTACGCTCCAATC
ATGCTCTGGACCACCGGGGCTACATATGGGGGTGGCGATTATTTTGGCAA
TACACAAAACTCGACTCGAAACACGACGAGGGGGATAGCCTACAGTTGTA
ACCTTCTCAAGATCAAAATGAAGGCGAGCGCCGAGCGCCCTGGAAGGGAG
GCGAAGAAAAAAAAAGTCGTGTGCTGACCTTGTTCCTGTCTGTCGTGACC
CCGGCTGAGACGCCCACATGTCTCGAAATGTGTAGACTGGCGTCCACAAT
ATATAGATGGGATGGCAACGCACAAACTATACGCACACACACGCACCTCT
TGAAATTTATTTTCGTCTAGTCCTCTTCTCGGACTGATATCTTCTTGTGT
TGCAAGTATCCATCTTATTTGAGCCTGCGTATTTGTACTCTTCGTTTTTT
GGCCACCACAGAAGATACCCTTGGTTGGGCGTATCTGTGCCTGTTATTTT
CTTGTTTCGTGTATGGCCTTTTCTTTCAGTCTCTTATCTTTTTGCTCCTA
GCACGACATGTGCCTGGTATGTGACTACGGGCCAGACTTTCGCGGTGAGC
TTATGCGAGGATTACCAACAGTACGTGATACGTTTTCTCTCTCCTACTTG
TTTGTGTACACCTAAAATTTTGGAATTAACAGTGATATAACTTTTGGTAC
TATTTTTTCCTCCCTCTCTCGTCCTCCTTGTGCCCCGTCTAAATTTAGCA
CAACCCCCCACCCAACCTCACTTCTCCCCGCCGGAACTAGTGCTGTCTTG
AAGGAGGCCCACAAACGCCGTGCCGAGATGATGGACTTGGTGCAGGGAGA
TCCCGTGTGGAAGGAGCGCTAGATGGAAATTATGAGGGTGCAAGAATTGG
GTGTGGCGGCGACGAGAGTAGCCGCAATCGATCCAGCAAACACACGTACG
ATCGCCACTTCCTTTGAGAGCGCTGAAGCAGAACTGTAACGCTAACACCG
GCCGCATCGCGTACAGCACCGTGTTGGTAGTCGTCGCTTGAGCGGGGGGG
AGCAGAATAACACGTGTGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:564570..566540-

>mRNA_P-littoralis_Contig75.157.1 ID=mRNA_P-littoralis_Contig75.157.1|Name=mRNA_P-littoralis_Contig75.157.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig75:564570..566540- (Pylaiella littoralis U1_48)
GCTTCATCGCTAGGGGTCGCACAGTGGCGATCGTGCTGTCTTGAAGGAGG
CCCACAAACGCCGTGCCGAGATGATGGACTTGGTGCAGGGAGATCCCGTG
TGGAAGGAGCGCTAGATGGAAATTATGAGGGTGCAAGAATTGGGTGTGGC
GGCGACGAGAGTAGCCGCAATCGATCCAGCAAACACACGTACGATCGCCA
CTTCCTTTGA
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