mRNA_P-littoralis_Contig746.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig746.39.1
Unique NamemRNA_P-littoralis_Contig746.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig746.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig746contigP-littoralis_Contig746:136968..137575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size610
Hectar predicted targeting categoryother localisation
Exons1
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791541.5778992-UTR-P-littoralis_Contig746:136967..1369691680791541.5778992-UTR-P-littoralis_Contig746:136967..136969Pylaiella littoralis U1_48UTRP-littoralis_Contig746 136968..136969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791541.5968106-CDS-P-littoralis_Contig746:136969..1375751680791541.5968106-CDS-P-littoralis_Contig746:136969..137575Pylaiella littoralis U1_48CDSP-littoralis_Contig746 136970..137575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig746.39.1prot_P-littoralis_Contig746.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig746 136970..137575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig746.39.1

>prot_P-littoralis_Contig746.39.1 ID=prot_P-littoralis_Contig746.39.1|Name=mRNA_P-littoralis_Contig746.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
MPIPRCSATGTSSGDAAMTTRAATEVVSAAPAPAVPAAACSATAAATVVR
AVPAPAPAATACSATVAATAVRAVPAPAPAVRSVARSPVSIPRCSANGAS
FGDAAMAALGTATTAAKAVVGAAPASAAPTAACSATSAIAAVPATGTAAP
SPAASVALPVSTLQGSTAGAAPTGWSGMESILAMGLSMLNICDDKVCLES
SL
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mRNA from alignment at P-littoralis_Contig746:136968..137575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig746.39.1 ID=mRNA_P-littoralis_Contig746.39.1|Name=mRNA_P-littoralis_Contig746.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=608bp|location=Sequence derived from alignment at P-littoralis_Contig746:136968..137575+ (Pylaiella littoralis U1_48)
CCATGCCGATCCCCCGCTGCTCCGCCACCGGTACGTCGTCAGGTGACGCT
GCGATGACGACAAGGGCGGCGACCGAGGTTGTCAGCGCAGCACCAGCGCC
AGCAGTACCAGCAGCCGCCTGCTCGGCAACGGCGGCGGCAACGGTTGTCC
GCGCAGTGCCAGCACCAGCGCCGGCGGCGACCGCCTGCTCGGCAACGGTG
GCGGCAACGGCTGTTCGCGCAGTGCCGGCACCGGCGCCGGCGGTGAGGTC
AGTGGCGAGATCACCCGTCTCGATCCCCCGCTGCTCCGCCAACGGTGCAT
CGTTTGGCGATGCGGCGATGGCGGCGTTGGGAACGGCAACGACGGCGGCA
AAGGCGGTTGTCGGTGCGGCACCTGCATCAGCAGCGCCGACGGCTGCCTG
CTCGGCCACGTCAGCAATAGCAGCAGTACCGGCGACTGGCACAGCAGCAC
CGTCACCGGCGGCATCGGTGGCATTACCCGTGTCTACCCTCCAGGGTTCC
ACCGCCGGTGCGGCACCAACCGGGTGGTCCGGCATGGAAAGCATACTTGC
TATGGGCTTGTCGATGCTGAACATTTGCGATGACAAGGTCTGCTTGGAGT
CAAGCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig746:136968..137575+

>mRNA_P-littoralis_Contig746.39.1 ID=mRNA_P-littoralis_Contig746.39.1|Name=mRNA_P-littoralis_Contig746.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig746:136968..137575+ (Pylaiella littoralis U1_48)
ATGCCGATCCCCCGCTGCTCCGCCACCGGTACGTCGTCAGGTGACGCTGC
GATGACGACAAGGGCGGCGACCGAGGTTGTCAGCGCAGCACCAGCGCCAG
CAGTACCAGCAGCCGCCTGCTCGGCAACGGCGGCGGCAACGGTTGTCCGC
GCAGTGCCAGCACCAGCGCCGGCGGCGACCGCCTGCTCGGCAACGGTGGC
GGCAACGGCTGTTCGCGCAGTGCCGGCACCGGCGCCGGCGGTGAGGTCAG
TGGCGAGATCACCCGTCTCGATCCCCCGCTGCTCCGCCAACGGTGCATCG
TTTGGCGATGCGGCGATGGCGGCGTTGGGAACGGCAACGACGGCGGCAAA
GGCGGTTGTCGGTGCGGCACCTGCATCAGCAGCGCCGACGGCTGCCTGCT
CGGCCACGTCAGCAATAGCAGCAGTACCGGCGACTGGCACAGCAGCACCG
TCACCGGCGGCATCGGTGGCATTACCCGTGTCTACCCTCCAGGGTTCCAC
CGCCGGTGCGGCACCAACCGGGTGGTCCGGCATGGAAAGCATACTTGCTA
TGGGCTTGTCGATGCTGAACATTTGCGATGACAAGGTCTGCTTGGAGTCA
AGCCTC
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