mRNA_P-littoralis_Contig743.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.32.1
Unique NamemRNA_P-littoralis_Contig743.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig743.32.1 vs. uniprot
Match: A0A6H5KD71_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD71_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.200e-41
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 DGVLGYVQEGGSVASMFEHFCTRNLCAESWDFIVAACKYEVPQEISDPKEQFEMFLRITEEYLQPTSPQEVNISSKMQTKVASLQ 255
            DGVLGY QEGGSVASMF+HFCTR+LCAESWDFIVAACKYE   EISDP+EQ+EMFLRITEEYLQPTSPQEVNI SKMQ K+ SLQ
Sbjct:  153 DGVLGYAQEGGSVASMFKHFCTRSLCAESWDFIVAACKYE---EISDPEEQYEMFLRITEEYLQPTSPQEVNIGSKMQAKMVSLQ 234
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BLAST of mRNA_P-littoralis_Contig743.32.1 vs. uniprot
Match: A0A6H5JLH7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.550e-38
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    1 DGVLGYVQEGGSVASMFEHFCTRNLCAESWDFIVAACKYEVPQEISDPKEQFEMFLRITEEYLQPTSPQEVNISSKMQTKVASLQ 255
            DGVLGY QEGGSVASMFE +C R+LCAESWDFIVAACKYE   EISDP+EQ++MFLRITEEYL+PTSPQEVNISSKMQ K+ SLQ
Sbjct:  191 DGVLGYAQEGGSVASMFEQYCMRSLCAESWDFIVAACKYE---EISDPEEQYKMFLRITEEYLRPTSPQEVNISSKMQAKMVSLQ 272
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BLAST of mRNA_P-littoralis_Contig743.32.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.060e-15
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 DGVLGYVQEGGSVASMFEHFCTRNLCAESWDFIVAACKYEVPQEISDPKEQFEMFLRITEEYLQPTSPQEVNISSKMQTKVAS 249
            DGV     +GG +A  F  F   NLC ESWDFI+ A KYE+ +   +P +QF+ FL +  +YL PTSP EVNISSKM  ++AS
Sbjct:  279 DGVYALAVKGGDMADRFGRFVQENLCMESWDFILDAVKYEM-ESSCEPDDQFDEFLILLNQYLLPTSPDEVNISSKMSKRMAS 360
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BLAST of mRNA_P-littoralis_Contig743.32.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.430e-15
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    4 GVLGYVQEGGSVASMFEHFCTRNLCAESWDFIVAACKYE--VPQEIS-DPK-EQFEMFLRITEEYLQPTSPQEVNISSKMQTKV 243
            GVL     GG +A  F  FC  NLC ESWDF+V   +YE   P  I+ DP+ EQF  FL I  +YL PTSP E+NISS M T++
Sbjct:   33 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLIANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRI 116
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BLAST of mRNA_P-littoralis_Contig743.32.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.620e-14
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    4 GVLGYVQEGGSVASMFEHFCTRNLCAESWDFIVAACKYE--VPQEIS-DPK-EQFEMFLRITEEYLQPTSPQEVNISSKMQTKV 243
            GVL     GG +A  F  FC  NLC ESWDF+V   +YE   P  ++ DP+ EQF  FL I  +YL PTSP E+NISS M T++
Sbjct:   96 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRI 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KD71_9PHAE6.200e-4185.88RGS domain-containing protein n=3 Tax=Ectocarpus s... [more]
A0A6H5JLH7_9PHAE2.550e-3882.35RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L0L8_9PHAE1.060e-1550.60RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQW8_ECTSI4.430e-1551.19RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI1.620e-1450.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:120722..121163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791539.7629418-CDS-P-littoralis_Contig743:120721..1208511680791539.7629418-CDS-P-littoralis_Contig743:120721..120851Pylaiella littoralis U1_48CDSP-littoralis_Contig743 120722..120851 -
1680791539.7742445-CDS-P-littoralis_Contig743:121038..1211631680791539.7742445-CDS-P-littoralis_Contig743:121038..121163Pylaiella littoralis U1_48CDSP-littoralis_Contig743 121039..121163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.32.1prot_P-littoralis_Contig743.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 120722..121163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.32.1

>prot_P-littoralis_Contig743.32.1 ID=prot_P-littoralis_Contig743.32.1|Name=mRNA_P-littoralis_Contig743.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
DGVLGYVQEGGSVASMFEHFCTRNLCAESWDFIVAACKYEVPQEISDPKE
QFEMFLRITEEYLQPTSPQEVNISSKMQTKVASLQ
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mRNA from alignment at P-littoralis_Contig743:120722..121163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.32.1 ID=mRNA_P-littoralis_Contig743.32.1|Name=mRNA_P-littoralis_Contig743.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=442bp|location=Sequence derived from alignment at P-littoralis_Contig743:120722..121163- (Pylaiella littoralis U1_48)
GATGGCGTTCTGGGGTATGTTCAGGAGGGCGGATCGGTCGCCTCCATGTT
CGAGCACTTCTGCACGCGGAACTTGTGCGCAGAGAGCTGGGATTTCATCG
TCGCCGCTTGCAAATATGAGGTACCGTGCAGTCCATCCCATAATTTTGGG
GATATTGGTTGTCGACGTCCCACAGACGTCGAGATTGTTGCACCAAGACC
CTCTCAACAAGCAATCGAACGTAGAATATTTAGTGTTCGAACACACGCGT
GTAGATCACTCGCCCCTACAGTGATCTTCCTTCTTGTCGCAACGAACCGA
TGTTTGATTGAGGCAGGAAATTTCAGACCCCAAGGAGCAGTTCGAAATGT
TCCTTCGCATCACGGAAGAATACTTGCAGCCCACCTCCCCTCAAGAGGTA
AACATCAGCAGCAAGATGCAAACGAAGGTCGCGTCGCTGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:120722..121163-

>mRNA_P-littoralis_Contig743.32.1 ID=mRNA_P-littoralis_Contig743.32.1|Name=mRNA_P-littoralis_Contig743.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig743:120722..121163- (Pylaiella littoralis U1_48)
GATGGCGTTCTGGGGTATGTTCAGGAGGGCGGATCGGTCGCCTCCATGTT
CGAGCACTTCTGCACGCGGAACTTGTGCGCAGAGAGCTGGGATTTCATCG
TCGCCGCTTGCAAATATGAGGTACCGCAGGAAATTTCAGACCCCAAGGAG
CAGTTCGAAATGTTCCTTCGCATCACGGAAGAATACTTGCAGCCCACCTC
CCCTCAAGAGGTAAACATCAGCAGCAAGATGCAAACGAAGGTCGCGTCGC
TGCAG
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