mRNA_P-littoralis_Contig743.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.15.1
Unique NamemRNA_P-littoralis_Contig743.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig743.15.1 vs. uniprot
Match: A0A6H5L1Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q2_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.680e-35
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 SATYPIEVPVWDKMGYLENPKVEGGCLMLLRRSPKVTIWPGGMETVKCRSSVPGK----GQCTNCVCITQGYGSCSELCRCKLACCEQRT 258
            SA YPI+VP  D MGY+EN +VEGGC+ML+RR PKVTIWPGG ETV+C+ S  GK    G+CT+CVCIT+G G CSELC+CKL C E+ T
Sbjct:   22 SARYPIQVPKRDGMGYIENTEVEGGCMMLMRRFPKVTIWPGGFETVRCKCS-SGKRKRGGRCTSCVCITKGSGQCSELCKCKLTCREEET 110
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BLAST of mRNA_P-littoralis_Contig743.15.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.050e-30
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 SATYPIEVPVWDKMGYLENPKVEGGCLMLLRRSPKVTIWPGGMETVKCRSSVPGK---GQCTNCVCITQGYGSCSELCRCKLACCEQRTTVDDVLRD 282
            SA YPI+V  WD M Y+E  +VEGGC+ML+RR PKVTIWPGG ETVKC  S   +   G CT+CVCIT+G+G CSELC+CKL C E+ T   ++  D
Sbjct:  478 SARYPIQVSKWDGMWYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSAKRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEESEMQED 574
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BLAST of mRNA_P-littoralis_Contig743.15.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.410e-30
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 SATYPIEVPVWDKMGYLENPKVEGGCLMLLRRSPKVTIWPGGMETVKCR-SSVPGKGQCTNCVCITQGYGSCSELCRCKLACCEQRTTVDDVLRD 282
            S  YPI VP W+  GYL++P+V+G C MLLRR PKVTIWPGG+ETVKCR S VPG+GQCT+CVC  +G   CSELC+CK ACC + T    +L D
Sbjct:  740 SENYPIAVPEWNNKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKG-SICSELCKCKRACCVEETNPSAMLFD 833
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BLAST of mRNA_P-littoralis_Contig743.15.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.450e-30
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 SATYPIEVPVWDKMGYLENPKVEGGCLMLLRRSPKVTIWPGGMETVKCR-SSVPGKGQCTNCVCITQGYGSCSELCRCKLACCEQRTTVDDVLRD 282
            S  YPI VP W+  GYL++P+V+G C MLLRR PKVTIWPGG+ETVKCR S VPG+GQCT+CVC  +G   CSELC+CK ACC + T    +L D
Sbjct: 1234 SENYPIAVPEWNNKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKG-SICSELCKCKRACCVEETNPSAMLFD 1327
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1Q2_9PHAE9.680e-3565.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE2.050e-3058.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA3_9PHAE2.410e-3062.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE2.450e-3062.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:31445..31753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.5231323-CDS-P-littoralis_Contig743:31444..317531680791538.5231323-CDS-P-littoralis_Contig743:31444..31753Pylaiella littoralis U1_48CDSP-littoralis_Contig743 31445..31753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.15.1prot_P-littoralis_Contig743.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 31445..31753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.15.1

>prot_P-littoralis_Contig743.15.1 ID=prot_P-littoralis_Contig743.15.1|Name=mRNA_P-littoralis_Contig743.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
SATYPIEVPVWDKMGYLENPKVEGGCLMLLRRSPKVTIWPGGMETVKCRS
SVPGKGQCTNCVCITQGYGSCSELCRCKLACCEQRTTVDDVLRDCSDTEH
SVD
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mRNA from alignment at P-littoralis_Contig743:31445..31753-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.15.1 ID=mRNA_P-littoralis_Contig743.15.1|Name=mRNA_P-littoralis_Contig743.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig743:31445..31753- (Pylaiella littoralis U1_48)
TCAGCCACCTATCCCATTGAAGTTCCCGTCTGGGATAAGATGGGGTACTT
GGAGAATCCGAAGGTCGAGGGGGGGTGCTTGATGTTGTTACGTAGGTCCC
CCAAGGTAACTATCTGGCCGGGTGGAATGGAAACGGTGAAGTGCAGATCT
TCTGTACCGGGAAAGGGTCAATGTACAAATTGTGTTTGCATCACACAGGG
GTATGGTAGTTGTTCAGAGTTGTGTAGATGCAAACTTGCTTGCTGCGAGC
AACGGACTACAGTCGATGACGTGCTGCGAGACTGTTCAGACACGGAGCAC
TCTGTAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:31445..31753-

>mRNA_P-littoralis_Contig743.15.1 ID=mRNA_P-littoralis_Contig743.15.1|Name=mRNA_P-littoralis_Contig743.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig743:31445..31753- (Pylaiella littoralis U1_48)
TCAGCCACCTATCCCATTGAAGTTCCCGTCTGGGATAAGATGGGGTACTT
GGAGAATCCGAAGGTCGAGGGGGGGTGCTTGATGTTGTTACGTAGGTCCC
CCAAGGTAACTATCTGGCCGGGTGGAATGGAAACGGTGAAGTGCAGATCT
TCTGTACCGGGAAAGGGTCAATGTACAAATTGTGTTTGCATCACACAGGG
GTATGGTAGTTGTTCAGAGTTGTGTAGATGCAAACTTGCTTGCTGCGAGC
AACGGACTACAGTCGATGACGTGCTGCGAGACTGTTCAGACACGGAGCAC
TCTGTAGAC
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