mRNA_P-littoralis_Contig742.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.17.1
Unique NamemRNA_P-littoralis_Contig742.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig742.17.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.610e-21
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:   87 LLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 392
            LLD+L+ +V GFR +   GAGPNVT  GLA    XXXXX N GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D+SLS L+GAG S+G  S
Sbjct:  120 LLDHLETFVCGFRQEPVGGAGPNVTGTGLAXXXXXXXXXENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE2.610e-2158.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:24989..25619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size631
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791537.0312755-UTR-P-littoralis_Contig742:24988..252241680791537.0312755-UTR-P-littoralis_Contig742:24988..25224Pylaiella littoralis U1_48UTRP-littoralis_Contig742 24989..25224 -
1680791537.0512257-UTR-P-littoralis_Contig742:25587..256191680791537.0512257-UTR-P-littoralis_Contig742:25587..25619Pylaiella littoralis U1_48UTRP-littoralis_Contig742 25588..25619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791537.041219-CDS-P-littoralis_Contig742:25224..255871680791537.041219-CDS-P-littoralis_Contig742:25224..25587Pylaiella littoralis U1_48CDSP-littoralis_Contig742 25225..25587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.17.1prot_P-littoralis_Contig742.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 25225..25587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.17.1

>prot_P-littoralis_Contig742.17.1 ID=prot_P-littoralis_Contig742.17.1|Name=mRNA_P-littoralis_Contig742.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MPSPSSSSTRVKNIWLQILLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGG
RGGGRGGENLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPI
VRDLSLSILDGAGASTGGDS*
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mRNA from alignment at P-littoralis_Contig742:24989..25619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.17.1 ID=mRNA_P-littoralis_Contig742.17.1|Name=mRNA_P-littoralis_Contig742.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=631bp|location=Sequence derived from alignment at P-littoralis_Contig742:24989..25619- (Pylaiella littoralis U1_48)
GTTGTACAACTTCTTCGTGGAAGAGCAGAAAAATGCCATCGCCATCAAGC
TCGAGTACCCGAGTCAAAAATATCTGGTTGCAAATCCTACTCGATTACCT
CGACGAGTATGTGGGCGGGTTCAGATGTGACTCGGGCGAAGGGGCAGGCC
CCAACGTGACCGACATCGGGCTAGCAGGGGGTCGTGGCGGGGGGCGTGGT
GGTGAGAACCTGGGTGAGAGCAACACCTCGACAGGTGGTGGTGAGATGGC
CTCTGCCAGTTGTGATTCGACGAGGGCGGAAGAATCTGTGGAGGAGGGGA
GGGAACACGACGATTTTCTATCCCGACCGATTGTAAGGGATTTGTCGCTG
TCGATTTTGGACGGGGCGGGTGCGTCTACCGGGGGTGATTCGTGAAGTAA
CTACCGAGGCAGGAGGTGAAGGTTGGGATGTCGGTGGTATGTTTTTTTTG
TTTTGCTTTGTCATAATGTAATTGATGTTCGCGGATCTGAGCTGCCAATC
TGGTTTTGTCTTGCCAGTGTTATGTGCGTGTCAAAGTTGGCGTCTGGTCT
GGTGGCGGTTTACCCTCGTCTCGCCACAACGACCGCAGATGCCTTGCACA
CCTTAGACGCTCCAGAAGACGGTTGAAATAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:24989..25619-

>mRNA_P-littoralis_Contig742.17.1 ID=mRNA_P-littoralis_Contig742.17.1|Name=mRNA_P-littoralis_Contig742.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig742:24989..25619- (Pylaiella littoralis U1_48)
ATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTTGCA
AATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGACT
CGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGGGGT
CGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTCGAC
AGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAG
AATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACCGATT
GTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGG
GGGTGATTCGTGA
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