mRNA_P-littoralis_Contig741.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.8.1
Unique NamemRNA_P-littoralis_Contig741.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig741.8.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.320e-18
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 3 
Query:    3 LLNSVVDVAMMVRMTAEGSPSGGWSAFRNYYTPQADAEKERVRQEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMEERETNTHVIRRLS 278
            L+ SV  + ++ ++ A+GSPSGGW  F NYY P+A AEKER+  +++ L   + E P+ +F R  VL S+L  HG++  + + N H++  LS
Sbjct:   81 LITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLS 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE4.320e-1840.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:40038..40354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size317
Hectar predicted targeting categoryother localisation
Exons1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.9386897-CDS-P-littoralis_Contig741:40037..403251680791535.9386897-CDS-P-littoralis_Contig741:40037..40325Pylaiella littoralis U1_48CDSP-littoralis_Contig741 40038..40325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.9519165-UTR-P-littoralis_Contig741:40325..403541680791535.9519165-UTR-P-littoralis_Contig741:40325..40354Pylaiella littoralis U1_48UTRP-littoralis_Contig741 40326..40354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.8.1prot_P-littoralis_Contig741.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 40038..40325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.8.1

>prot_P-littoralis_Contig741.8.1 ID=prot_P-littoralis_Contig741.8.1|Name=mRNA_P-littoralis_Contig741.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MMVRMTAEGSPSGGWSAFRNYYTPQADAEKERVRQEWYDLRQGLNEAPKQ
FFSRVTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQAEILLAN
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mRNA from alignment at P-littoralis_Contig741:40038..40354-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.8.1 ID=mRNA_P-littoralis_Contig741.8.1|Name=mRNA_P-littoralis_Contig741.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=317bp|location=Sequence derived from alignment at P-littoralis_Contig741:40038..40354- (Pylaiella littoralis U1_48)
TGCTCCTGAACAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGCG
GAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAGGAATTACTACACTCC
ACAGGCAGATGCTGAGAAAGAAAGAGTAAGACAAGAATGGTATGATTTGC
GACAGGGACTGAACGAAGCACCCAAGCAGTTTTTCTCCAGGGTAACAGTG
CTGGAAAGTAAACTTTGTAGACATGGGATTGTGATGGAGGAGAGAGAAAC
AAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACACGCAAGCCG
AAATTTTGCTCGCCAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:40038..40354-

>mRNA_P-littoralis_Contig741.8.1 ID=mRNA_P-littoralis_Contig741.8.1|Name=mRNA_P-littoralis_Contig741.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig741:40038..40354- (Pylaiella littoralis U1_48)
ATGATGGTTAGGATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGC
GTTCAGGAATTACTACACTCCACAGGCAGATGCTGAGAAAGAAAGAGTAA
GACAAGAATGGTATGATTTGCGACAGGGACTGAACGAAGCACCCAAGCAG
TTTTTCTCCAGGGTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGAT
TGTGATGGAGGAGAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGT
CGCTGTTTAACACGCAAGCCGAAATTTTGCTCGCCAAT
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