mRNA_P-littoralis_Contig740.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig740.7.1
Unique NamemRNA_P-littoralis_Contig740.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.360e-19
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEA 210
            NW+RGEGGY L+G  GV +RLP GMRLA++ DFSLLL+ RL ELR HP KYFP+LL +A + L +EE  A
Sbjct:  390 NWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSA 459
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BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.920e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRL 123
            NW+RGEGGYFL+G  GV +RLPPGMRLAE  DFSLLL+ RL
Sbjct:  117 NWIRGEGGYFLEGTGGVAERLPPGMRLAEAADFSLLLVKRL 157
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BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.290e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEAFLQNFEE 231
            NW+RG+GG+FLKG +GV ++L PGMRL EV DFS LLL +L  +R+ P  YF  +L      L +   + F+ NF E
Sbjct:  143 NWIRGKGGFFLKG-EGVGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSE 218
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BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.860e-11
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEAFLQNFEE 231
            NW+RG+GG+FLKG +GV +RL PGMRL EV D S LLL +L  +R+ P  YF  +L      L +   + F+ NF E
Sbjct:  103 NWIRGKGGFFLKG-EGVGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVLERVRTTLSEPMEKLFMTNFSE 178
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BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.430e-10
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELL 168
            NW+RG+GG+FLKG +GV +RL PGMRL EV D S LLL +L  +R+ P  YF  +L
Sbjct:  103 NWIRGKGGFFLKG-EGVGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVL 157
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BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Match: A0A6H5KEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.450e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFS 102
            NW+RG+GG+FLKG +GV +RL PGMRL EV DFS
Sbjct:  163 NWIRGKGGFFLKG-EGVGRRLFPGMRLVEVADFS 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig740.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JU73_9PHAE1.360e-1962.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE4.920e-1275.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI1.290e-1148.05Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5L8G1_9PHAE4.860e-1148.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP72_9PHAE4.430e-1057.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEV4_9PHAE2.450e-670.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig740contigP-littoralis_Contig740:61500..62073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size233
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.7021916-CDS-P-littoralis_Contig740:61499..615291680791534.7021916-CDS-P-littoralis_Contig740:61499..61529Pylaiella littoralis U1_48CDSP-littoralis_Contig740 61500..61529 -
1680791534.7171082-CDS-P-littoralis_Contig740:61872..620731680791534.7171082-CDS-P-littoralis_Contig740:61872..62073Pylaiella littoralis U1_48CDSP-littoralis_Contig740 61873..62073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig740.7.1prot_P-littoralis_Contig740.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig740 61500..62073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig740.7.1

>prot_P-littoralis_Contig740.7.1 ID=prot_P-littoralis_Contig740.7.1|Name=mRNA_P-littoralis_Contig740.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWK
YFPELLYFAMQKLDDEEFEAFLQNFEE
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mRNA from alignment at P-littoralis_Contig740:61500..62073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig740.7.1 ID=mRNA_P-littoralis_Contig740.7.1|Name=mRNA_P-littoralis_Contig740.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=574bp|location=Sequence derived from alignment at P-littoralis_Contig740:61500..62073- (Pylaiella littoralis U1_48)
AACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAGT
ACCGAAGCGGCTGCCACCTGGGATGCGATTGGCCGAAGTACCTGACTTCT
CCCTCTTGTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGGAAG
TATTTTCCTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGAAGA
GGTGAAAAAATAAAAATGATTTCCCAGCAGCAGCTGTTTTTTATCTGAAC
AAATGAATGAAAAAATGTTTTTACATCAGTCTGAATTTGACTGAAACAGA
GAGGGAAAAATGATTTTTTTCCAAATCAAGAAAGAGAAGGCTGAGCAAAA
CTTTTTGCGGAACATCTTCTGCTGCTGTTTGCCTGCTCTGTTTCTCTGCT
ATCTCTGTCGTCTCATGCTCGCGAGCGCCGGCTCGCATGCGTTGTGACTG
GACTTTCACTACCACCGTTCGCAACCCTCACGAGTTTCCTGTATTTCGCC
TACCCCTGCGTTCTCTATTCTCCTGACGCGTGCTGCTCGACCAGTTCGAG
GCATTTTTGCAAAATTTCGAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig740:61500..62073-

>mRNA_P-littoralis_Contig740.7.1 ID=mRNA_P-littoralis_Contig740.7.1|Name=mRNA_P-littoralis_Contig740.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig740:61500..62073- (Pylaiella littoralis U1_48)
AACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAGT
ACCGAAGCGGCTGCCACCTGGGATGCGATTGGCCGAAGTACCTGACTTCT
CCCTCTTGTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGGAAG
TATTTTCCTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGAAGA
GTTCGAGGCATTTTTGCAAAATTTCGAAGAA
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