mRNA_P-littoralis_Contig74.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.96.1
Unique NamemRNA_P-littoralis_Contig74.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.96.1 vs. uniprot
Match: D7FQY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.190e-15
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 LGNVLVKAS--PKSSNKFEMEVDRETMIAPLKNLITSTPSLTHLFPDTPKHEALAGVR 168
            LGNVL+K+S  P +  KFE+E   ETMIAPLK LI   P  THLFPDTPKHEALAGVR
Sbjct:  740 LGNVLIKSSADPVNHRKFEIEYGSETMIAPLKQLIEIIPKWTHLFPDTPKHEALAGVR 797
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY1_ECTSI3.190e-1568.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:419355..419525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791532.5512624-CDS-P-littoralis_Contig74:419354..4195251680791532.5512624-CDS-P-littoralis_Contig74:419354..419525Pylaiella littoralis U1_48CDSP-littoralis_Contig74 419355..419525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.96.1prot_P-littoralis_Contig74.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 419355..419525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.96.1

>prot_P-littoralis_Contig74.96.1 ID=prot_P-littoralis_Contig74.96.1|Name=mRNA_P-littoralis_Contig74.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
LGNVLVKASPKSSNKFEMEVDRETMIAPLKNLITSTPSLTHLFPDTPKHE
ALAGVR*
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mRNA from alignment at P-littoralis_Contig74:419355..419525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.96.1 ID=mRNA_P-littoralis_Contig74.96.1|Name=mRNA_P-littoralis_Contig74.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig74:419355..419525+ (Pylaiella littoralis U1_48)
CTTGGGAATGTTCTCGTCAAGGCGTCGCCTAAAAGCTCCAACAAGTTCGA
AATGGAGGTCGACAGAGAAACAATGATCGCGCCTCTCAAGAATTTGATCA
CTTCCACCCCGAGTTTGACGCATTTGTTTCCGGACACTCCCAAGCATGAG
GCTCTCGCTGGTGTACGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:419355..419525+

>mRNA_P-littoralis_Contig74.96.1 ID=mRNA_P-littoralis_Contig74.96.1|Name=mRNA_P-littoralis_Contig74.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig74:419355..419525+ (Pylaiella littoralis U1_48)
CTTGGGAATGTTCTCGTCAAGGCGTCGCCTAAAAGCTCCAACAAGTTCGA
AATGGAGGTCGACAGAGAAACAATGATCGCGCCTCTCAAGAATTTGATCA
CTTCCACCCCGAGTTTGACGCATTTGTTTCCGGACACTCCCAAGCATGAG
GCTCTCGCTGGTGTACGATAG
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