mRNA_P-littoralis_Contig1184.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1184.19.1
Unique NamemRNA_P-littoralis_Contig1184.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1184.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1184contigP-littoralis_Contig1184:40961..42425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1102
Hectar predicted targeting categoryother localisation
Exons4
Cds size648
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1184.19.1prot_P-littoralis_Contig1184.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1184 41231..42241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.1013854-UTR-P-littoralis_Contig1184:40960..412301680789497.1013854-UTR-P-littoralis_Contig1184:40960..41230Pylaiella littoralis U1_48UTRP-littoralis_Contig1184 40961..41230 -
1680789497.1523137-UTR-P-littoralis_Contig1184:42241..424251680789497.1523137-UTR-P-littoralis_Contig1184:42241..42425Pylaiella littoralis U1_48UTRP-littoralis_Contig1184 42242..42425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.1126583-CDS-P-littoralis_Contig1184:41230..412531680789497.1126583-CDS-P-littoralis_Contig1184:41230..41253Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 41231..41253 -
1680789497.1240506-CDS-P-littoralis_Contig1184:41558..418711680789497.1240506-CDS-P-littoralis_Contig1184:41558..41871Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 41559..41871 -
1680789497.1334164-CDS-P-littoralis_Contig1184:41918..421511680789497.1334164-CDS-P-littoralis_Contig1184:41918..42151Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 41919..42151 -
1680789497.1435962-CDS-P-littoralis_Contig1184:42162..422411680789497.1435962-CDS-P-littoralis_Contig1184:42162..42241Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 42163..42241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1184.19.1

>prot_P-littoralis_Contig1184.19.1 ID=prot_P-littoralis_Contig1184.19.1|Name=mRNA_P-littoralis_Contig1184.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MRTSGCQFHCSCWRFLASMGEKERTLERHAFWSGIHLLRVSMCAAFHVTR
HKTQQASEQARTKIKTPGIYHTWVNKIGSCACCACNYRESVTQDDTPPPI
DRLLIIYFSKKLSTLSLRHHFRHLTPRVGVINPSKSVRGGRGILRHLWCH
VTAHPPLYLASPCLWALPVGSARGLCLWALPVGSADTVFADMKWSLHVCF
VGLLRPRGDYAPSRV*
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mRNA from alignment at P-littoralis_Contig1184:40961..42425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1184.19.1 ID=mRNA_P-littoralis_Contig1184.19.1|Name=mRNA_P-littoralis_Contig1184.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1465bp|location=Sequence derived from alignment at P-littoralis_Contig1184:40961..42425- (Pylaiella littoralis U1_48)
GGGAAGGACGCGTAGAGGTCAGCAGACCTGAGTGACAACTACACCGGGGG
CACGAAAAGATGAAAAAACGCCAGGGAAAAACGCTTTTGCAGGAGCTTAT
GCCGGGGATTTTTCGAACAGTAGATCGAAAATTGCTTCTCCGCAGGCGTA
TGATACGTTAGCACATGCGTATGGTATCTACGGCATGCGGACATCTGGTT
GTCAATTCCATTGTTCTTGTTGGAGATTTTTAGCTTCCATGGGCGAGAAG
GAGAGGACGTTGGGTTTTCAAAAGAACGACACGCGTTCTGGTCAGGTATA
CACCTGCTGCGGGTGTCAATGTGTGCTGCGTTTCATGTTACAAGACACAA
AACACAACAAGCAAGCGAGCAAGCACGAACAAAAATAAAAACGCCCGGTA
TTTATCATACTTGGGTAAACAAAATTGGCTCCTGTGCCTGCTGTGCATGT
AACTACCGCGAGAGTGTGACACAAGATGACACCCCCCCCCCCATAGACAG
GTTATTGCAGATCGACTACTCAGTAACGAAGAGGGCACCAACACCAAACA
CGATATCATATATTTTTCGAAAAAGCTCTCGACGCTTTCCTTACGCCACC
ATTTTCGGCACTTGACACCTCGTGTTGGGGTAATCAATCCTTCAAAATCA
GTCCGGGGGGGGCGTGGTATATTGCGGCACCTATGGTGTCATGTCACGGC
ACACCCTCCTCTGTATCTAGCGTCACCTTGCCTGTGGGCTCTGCCCGTGG
GCTCTGCCCGTGGGCTCTGCCTGTGGGCTCTGCCTGTGGGCTCTGCCGAT
ACTGTATTTGCTGATATGAAATGGAGTCTTCACGTATGCTTTGTTGGGCT
CCTTCGCCCCCGTGGCGTTTAGATCGATTTCACGGTTGATTTAATTTCGG
AAGTGATCGGGGAGTTGGCTGGCGGGTCATGCACAGCTTCGAAGCGAATG
GTTCGATCGGGCATCCTCAATCGCCACAGAAAACGGTCAGAGGTAGGACA
GGAAACACGGTTTTGAGATTCCAAAAGAGGAGCCGGGCTGGGGGCTGCGG
TGGTGGCCCATCGTAAAAGCGTCCAAAAATCGGTACAGGGCGGGTTCGAC
CGAACCAGGGTGTGGGGCTGCAGGGTCAGTTCCCGGGGAAAATTCCTTGC
GTGCGCACCGTTCTGTATAACCACTACGCACCCTCTCGGGTATGATGACG
TTTTCTGTCGTTTTCCCCCGCAACAAACACACGGAAGATACAAGCAGTAC
AAAGACATTGAAGTGCCCCATTCCACGCCTTCAGGGGTTTTGCTGGGGTG
CAACAATCATGACGACGACGACGACGACGACGACTGGGATGCCTTTTCAT
ACGCACGCACGCGCACACGCCGCACACAAACCTCATCATCGAGCTCGTAG
TCGAGCAGGCAGATGGCGCAGCTCTCCTCGAGCATCTCCCCCGCCGCCAC
CCCGGCCCGAAGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1184:40961..42425-

>mRNA_P-littoralis_Contig1184.19.1 ID=mRNA_P-littoralis_Contig1184.19.1|Name=mRNA_P-littoralis_Contig1184.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig1184:40961..42425- (Pylaiella littoralis U1_48)
ATGCGGACATCTGGTTGTCAATTCCATTGTTCTTGTTGGAGATTTTTAGC
TTCCATGGGCGAGAAGGAGAGGACGTTGGAACGACACGCGTTCTGGTCAG
GTATACACCTGCTGCGGGTGTCAATGTGTGCTGCGTTTCATGTTACAAGA
CACAAAACACAACAAGCAAGCGAGCAAGCACGAACAAAAATAAAAACGCC
CGGTATTTATCATACTTGGGTAAACAAAATTGGCTCCTGTGCCTGCTGTG
CATGTAACTACCGCGAGAGTGTGACACAAGATGACACCCCCCCCCCCATA
GACAGGTTATTGATCATATATTTTTCGAAAAAGCTCTCGACGCTTTCCTT
ACGCCACCATTTTCGGCACTTGACACCTCGTGTTGGGGTAATCAATCCTT
CAAAATCAGTCCGGGGGGGGCGTGGTATATTGCGGCACCTATGGTGTCAT
GTCACGGCACACCCTCCTCTGTATCTAGCGTCACCTTGCCTGTGGGCTCT
GCCCGTGGGCTCTGCCCGTGGGCTCTGCCTGTGGGCTCTGCCTGTGGGCT
CTGCCGATACTGTATTTGCTGATATGAAATGGAGTCTTCACGTATGCTTT
GTTGGGCTCCTTCGCCCCCGTGGCGACTACGCACCCTCTCGGGTATGA
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