mRNA_P-littoralis_Contig73.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig73.1.1
Unique NamemRNA_P-littoralis_Contig73.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig73.1.1 vs. uniprot
Match: A0A345MSH9_9VIRU (Triacylglycerol lipase n=1 Tax=CRESS virus sp. TaxID=2202563 RepID=A0A345MSH9_9VIRU)

HSP 1 Score: 137 bits (344), Expect = 2.290e-37
Identity = 76/156 (48.72%), Postives = 103/156 (66.03%), Query Frame = 1 
Query:    1 VVVGLRGTADK--RDVLTDVALTLGAFRKTRHYKESVKNFKKVHNHYGEDHHYHTAGHSLAAANSLALGLRFPNSIKSSVGFNTPGSMLSPLSTFAQANIGQTRTQRKVFGNKKQKGSHIDYWNSMDPVGIFAASHRTGHFQKRHHSWNPHSLESW 462
            V++G RGT  K  RD+ +D ALT+G F+ T+HYK SVK +++V + YG +  YH +GHSL A N+ AL  R+PNS ++SVGFN PGS+   +S+  Q NI QT TQ+KV         H+ Y N++DPV I +   +    QK HHSWNPHSL+SW
Sbjct:   83 VIMGSRGTNPKELRDLYSDAALTIGQFKGTKHYKTSVKKYQQVQDKYGPNQSYHLSGHSLGAHNTYALANRYPNSTQTSVGFNQPGSLPGLVSSGIQ-NIYQTPTQKKV------DKFHVMYNNTLDPVSILSRHRKIQRNQKAHHSWNPHSLQSW 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A345MSH9_9VIRU2.290e-3748.72Triacylglycerol lipase n=1 Tax=CRESS virus sp. Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig73contigP-littoralis_Contig73:1152..1628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size477
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791511.0992994-CDS-P-littoralis_Contig73:1151..16281680791511.0992994-CDS-P-littoralis_Contig73:1151..1628Pylaiella littoralis U1_48CDSP-littoralis_Contig73 1152..1628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig73.1.1prot_P-littoralis_Contig73.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig73 1152..1628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig73.1.1

>prot_P-littoralis_Contig73.1.1 ID=prot_P-littoralis_Contig73.1.1|Name=mRNA_P-littoralis_Contig73.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
VVVGLRGTADKRDVLTDVALTLGAFRKTRHYKESVKNFKKVHNHYGEDHH
YHTAGHSLAAANSLALGLRFPNSIKSSVGFNTPGSMLSPLSTFAQANIGQ
TRTQRKVFGNKKQKGSHIDYWNSMDPVGIFAASHRTGHFQKRHHSWNPHS
LESWMYEH*
back to top

mRNA from alignment at P-littoralis_Contig73:1152..1628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig73.1.1 ID=mRNA_P-littoralis_Contig73.1.1|Name=mRNA_P-littoralis_Contig73.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig73:1152..1628+ (Pylaiella littoralis U1_48)
GTGGTCGTGGGTCTAAGAGGCACAGCGGATAAACGAGACGTTTTAACAGA
CGTTGCCTTGACCCTTGGGGCTTTTCGCAAGACAAGACACTACAAAGAAT
CCGTTAAGAATTTTAAGAAAGTTCATAATCATTATGGTGAAGACCATCAT
TACCACACGGCGGGGCACTCTTTAGCTGCAGCAAATTCTTTGGCATTAGG
GCTCAGGTTCCCTAATAGCATAAAGTCGTCAGTCGGCTTTAATACACCTG
GGAGTATGCTATCTCCCTTATCCACTTTTGCACAAGCAAACATCGGGCAA
ACCCGTACACAACGCAAGGTTTTTGGCAACAAGAAACAGAAAGGTTCACA
TATAGACTATTGGAATTCCATGGATCCAGTAGGTATATTTGCAGCTTCCC
ACAGGACTGGACACTTCCAGAAACGACATCATAGCTGGAATCCGCACTCT
TTGGAGTCGTGGATGTATGAGCATTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig73:1152..1628+

>mRNA_P-littoralis_Contig73.1.1 ID=mRNA_P-littoralis_Contig73.1.1|Name=mRNA_P-littoralis_Contig73.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig73:1152..1628+ (Pylaiella littoralis U1_48)
GTGGTCGTGGGTCTAAGAGGCACAGCGGATAAACGAGACGTTTTAACAGA
CGTTGCCTTGACCCTTGGGGCTTTTCGCAAGACAAGACACTACAAAGAAT
CCGTTAAGAATTTTAAGAAAGTTCATAATCATTATGGTGAAGACCATCAT
TACCACACGGCGGGGCACTCTTTAGCTGCAGCAAATTCTTTGGCATTAGG
GCTCAGGTTCCCTAATAGCATAAAGTCGTCAGTCGGCTTTAATACACCTG
GGAGTATGCTATCTCCCTTATCCACTTTTGCACAAGCAAACATCGGGCAA
ACCCGTACACAACGCAAGGTTTTTGGCAACAAGAAACAGAAAGGTTCACA
TATAGACTATTGGAATTCCATGGATCCAGTAGGTATATTTGCAGCTTCCC
ACAGGACTGGACACTTCCAGAAACGACATCATAGCTGGAATCCGCACTCT
TTGGAGTCGTGGATGTATGAGCATTAG
back to top