mRNA_P-littoralis_Contig729.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig729.31.1
Unique NamemRNA_P-littoralis_Contig729.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.780e-13
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FRLQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQK 135
            F LQ KFAEAE LY++CQAI E+ LGPEHPS+ATTLHG+AGL+ K
Sbjct:  651 FELQGKFAEAEELYDRCQAINEEALGPEHPSVATTLHGRAGLMVK 695
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.610e-11
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 LQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQ 132
            L+ K+AEAEALY QCQAI EKVLGPEHPSLATTLH  A LL+
Sbjct: 1763 LKGKYAEAEALYAQCQAIEEKVLGPEHPSLATTLHNLADLLR 1804
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-9
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   16 KFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQKQ 138
            K+ +AE LYE+CQAI+EK LGPEHP +ATTL+ +AGLL+ Q
Sbjct:  942 KYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.100e-9
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 QCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLH 111
            Q K+AEAEALY +CQAI EKVLGPEHPSLA+TLH
Sbjct:  339 QGKYAEAEALYVRCQAIEEKVLGPEHPSLASTLH 372
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.990e-8
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 FRLQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQK 135
            F +Q K+AEAE LYE+  AI EKVLGPEHP +AT+L  +A LL++
Sbjct:  690 FNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLER 734
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.430e-8
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    7 LQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQKQ 138
            +Q K++EAE LY++CQA+  K LGPEHPSLA TL+ +A LL+ Q
Sbjct:  185 IQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.640e-8
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 FRLQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQKQV 141
            F +Q K+ EAE LYE+ QAI EKVLG EHP +A++L+ +  LL+ QV
Sbjct:   15 FDIQGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-6
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 FRLQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQA 120
            F +Q KF EAE LY + QAI EKVLGPEHP +AT+L+ +A
Sbjct:  431 FNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 FRLQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLH 111
            F +Q K+AEAE LYE+ +AI EKVLGPEHP +AT+L+
Sbjct:  673 FNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLN 709
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BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.660e-6
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 QCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQKQ 138
            Q K+ EAE LYE+ QAI EKVLG EHP +AT+L+ +A LL KQ
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig729.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LL58_ECTSI3.780e-1373.33NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KHN5_9PHAE1.610e-1178.57CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJK0_9PHAE1.280e-965.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH0_ECTSI6.100e-982.35Tetratricopeptide repeat containing protein n=1 Ta... [more]
D7G722_ECTSI3.990e-860.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JUC1_9PHAE7.430e-859.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3K8_9PHAE8.640e-855.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJA6_9PHAE1.240e-662.50NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI1.250e-664.86NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMK1_9PHAE1.660e-662.79Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig729contigP-littoralis_Contig729:143545..143700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LL58
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.2e-14
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size156
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.8111112-CDS-P-littoralis_Contig729:143544..1437001680791510.8111112-CDS-P-littoralis_Contig729:143544..143700Pylaiella littoralis U1_48CDSP-littoralis_Contig729 143545..143700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig729.31.1prot_P-littoralis_Contig729.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig729 143545..143700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig729.31.1

>prot_P-littoralis_Contig729.31.1 ID=prot_P-littoralis_Contig729.31.1|Name=mRNA_P-littoralis_Contig729.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
FRLQCKFAEAEALYEQCQAIFEKVLGPEHPSLATTLHGQAGLLQKQVRRS
E*
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mRNA from alignment at P-littoralis_Contig729:143545..143700-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig729.31.1 ID=mRNA_P-littoralis_Contig729.31.1|Name=mRNA_P-littoralis_Contig729.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig729:143545..143700- (Pylaiella littoralis U1_48)
TTCCGCTTACAGTGCAAGTTTGCTGAGGCGGAGGCACTGTATGAGCAGTG
TCAGGCGATCTTCGAGAAGGTGCTGGGCCCGGAGCACCCAAGCTTGGCCA
CGACGCTCCACGGCCAGGCTGGATTGTTGCAAAAACAGGTGAGACGATCT
GAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig729:143545..143700-

>mRNA_P-littoralis_Contig729.31.1 ID=mRNA_P-littoralis_Contig729.31.1|Name=mRNA_P-littoralis_Contig729.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig729:143545..143700- (Pylaiella littoralis U1_48)
TTCCGCTTACAGTGCAAGTTTGCTGAGGCGGAGGCACTGTATGAGCAGTG
TCAGGCGATCTTCGAGAAGGTGCTGGGCCCGGAGCACCCAAGCTTGGCCA
CGACGCTCCACGGCCAGGCTGGATTGTTGCAAAAACAGGTGAGACGATCT
GAATAA
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