mRNA_P-littoralis_Contig727.75.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.75.4
Unique NamemRNA_P-littoralis_Contig727.75.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig727.75.4 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.090e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 2 
Query:    2 CSFEKVFGSVRGMLPATA-PGRNTPNWIQNLPRLDRYATALIPERLRHIWEAWFVETDGNCLWRALAKALWDCDQFWPHLK 241
            C++ KVFG+  G++P  A PG+    +       D  AT ++   LR  + A +VE DGNC WR++AKALW  D++W  LK
Sbjct:   60 CTWPKVFGTPEGVVPTVARPGKGQEMY-------DPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLK 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.75.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE4.090e-1140.74SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:143416..144541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791509.5249214-UTR-P-littoralis_Contig727:143415..1434521680791509.5249214-UTR-P-littoralis_Contig727:143415..143452Pylaiella littoralis U1_48UTRP-littoralis_Contig727 143416..143452 +
1680791509.5730245-UTR-P-littoralis_Contig727:144512..1445411680791509.5730245-UTR-P-littoralis_Contig727:144512..144541Pylaiella littoralis U1_48UTRP-littoralis_Contig727 144513..144541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791509.537418-CDS-P-littoralis_Contig727:143452..1434881680791509.537418-CDS-P-littoralis_Contig727:143452..143488Pylaiella littoralis U1_48CDSP-littoralis_Contig727 143453..143488 +
1680791509.548829-CDS-P-littoralis_Contig727:144003..1441711680791509.548829-CDS-P-littoralis_Contig727:144003..144171Pylaiella littoralis U1_48CDSP-littoralis_Contig727 144004..144171 +
1680791509.5622213-CDS-P-littoralis_Contig727:144461..1445121680791509.5622213-CDS-P-littoralis_Contig727:144461..144512Pylaiella littoralis U1_48CDSP-littoralis_Contig727 144462..144512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.75.4prot_P-littoralis_Contig727.75.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 143453..144512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.75.4

>prot_P-littoralis_Contig727.75.4 ID=prot_P-littoralis_Contig727.75.4|Name=mRNA_P-littoralis_Contig727.75.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MLPATAPGRNTPNWIQNLPRLDRYATALIPERLRHIWEAWFVETDGNCLW
RALAKALWDCDQFWPHLKARKKNEATGATGWRNW*
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mRNA from alignment at P-littoralis_Contig727:143416..144541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.75.4 ID=mRNA_P-littoralis_Contig727.75.4|Name=mRNA_P-littoralis_Contig727.75.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1126bp|location=Sequence derived from alignment at P-littoralis_Contig727:143416..144541+ (Pylaiella littoralis U1_48)
CTGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCA
CCGCACCCGGCAGGAATACGCCGGTAAGCGAATCGTCGCAACTGTGCTAT
CGTAAACTCTGTTGGTGTATTTTTACGATTCCGCTCGTTTAAAGGCCGCG
AGGCTGGATTTGGTTGGTTGATTGAGCTGGGTTGATTTGGTTGAGTTGGT
TAGAGGGTTAAATGAAATTGGGTTTGTACAGGAGTGGCGTTGCGCCAAAT
ACGAAACGGCTTGAATATGTTACGTTAGATTGAGTCAAGCGTGTAAATAT
CACGGAGCGGGCGCCCTTCCCAGCGTGGCCATCAGACATTGTGTTCGCTG
TTGCCAAGGTGCTAGTAACTTAAAATGAACCCCACCGCGTAGCGCGAATA
AGAACGGTGTCAGCGGCAACTGTTGTAATTCGTGGCTTTGTGTAGACCGC
CTACCTGTTCGATAGAATCAATTTATTGGGAATGATTATTCCATGTTCTG
GGAGGCATATTCGTACAACAGGATTTTGTCGCGAGGCAGAGCGTTTCGCT
GAACCTTTTCTGCCCCTGCCTCCGAACCCCTGCCTCAGAACTGGATCCAG
AATCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCCAGAACGGCT
GCGCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGT
GGCGTGCCCTCGCCAAGGCCTTGTGGGATTGCGACCAGTTTTGGCCCCAT
TTGAAGGTTGTGGTTTTAGGATGGACTGCTGTGAACGCGGGAGCCCTTGT
AGAAGATGGTGGGAGTCCTTTTTCGCTGCAAGAAATTCTATTCGCAACCC
GTCGTCGAGAAGTATTCGTGCCCCGCTGACTCAAGTGGGCTTACTTGTGA
TGCGGTCGATAACGCCCTCATGATGGTCCTGGAGTCCATCCTGGAATTTT
TGCCCAAATAAAAAGTGGGGCGGAGACCTTACCGCGCTCTGGACATCTGA
AGCGCTAGGCATCACGGTGAAATTGGTTGTTCCCACTGACATGCAGGCGC
GGAAGAAGAACGAGGCAACGGGGGCAACCGGGTGGAGGAACTGGTAGGAA
CGGGGGCAACCGCGATATCAGTCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:143416..144541+

>mRNA_P-littoralis_Contig727.75.4 ID=mRNA_P-littoralis_Contig727.75.4|Name=mRNA_P-littoralis_Contig727.75.4|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig727:143416..144541+ (Pylaiella littoralis U1_48)
ATGCTACCGGCCACCGCACCCGGCAGGAATACGCCGAACTGGATCCAGAA
TCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCCAGAACGGCTGC
GCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGTGG
CGTGCCCTCGCCAAGGCCTTGTGGGATTGCGACCAGTTTTGGCCCCATTT
GAAGGCGCGGAAGAAGAACGAGGCAACGGGGGCAACCGGGTGGAGGAACT
GGTAG
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