mRNA_P-littoralis_Contig725.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig725.6.1
Unique NamemRNA_P-littoralis_Contig725.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig725.6.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 7.140e-29
Identity = 61/117 (52.14%), Postives = 74/117 (63.25%), Query Frame = 3 
Query:  774 LPADAHIDATSVPFVEHFMEGGRRRDWVVSSPPYKNALLILKNACQIAKVGVAFKLRLNFLEPVPSRAQWLMDNLPSTVKVLSRATYRGRKSSGVEAWLFWKV---NLDTAGDSMFF 1115
            L AD H+DATS  F   F   G+R DW+V+SPPY NA  IL  A  + +VGVAFKLRL+FLEP  +R +WL DN PS V VL RATY GR  S  EAW  W +    ++  G + FF
Sbjct:   59 LTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFF 175
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BLAST of mRNA_P-littoralis_Contig725.6.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 72.0 bits (175), Expect = 4.420e-11
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 3 
Query:  849 DWVVSSPPYKNALLILKNACQIAKVGVAFKLRLNFLEPVPSRAQWLMDNLPSTVKVLSRATYRG--RKSSGVEAWLFWKVNLDTAGDSMFFAPKR 1127
            DWVV++PP+ +A  IL  A + A VGVAF LRL++LEP   R QWL ++ P  + VL R ++ G  +  S   AW+ WK    +  + +   PK+
Sbjct:   86 DWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLI-VLPRISFTGDGKVDSCTCAWMIWKKGYSS--EDLIIVPKK 177
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BLAST of mRNA_P-littoralis_Contig725.6.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.700e-11
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 3 
Query:  267 IRLPKDSAGLVLHAIREVHGEAMTGSLARACFACGRPHAPTAAPPQRWRHTGHGLYWSALADWAQSVVDDWVHERDIIQNPLRVGECVC 533
            +R  + S G V+H        A  G L R CFAC RP +        W+H     YW+ L +W+ +V + W HERD++ +PL+ GEC+C
Sbjct:    2 VRQRRASCGKVVHGKEP----AAAGEL-RRCFACDRPGSRDGCSTN-WQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECIC 84
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BLAST of mRNA_P-littoralis_Contig725.6.1 vs. uniprot
Match: UPI00168410EB (hypothetical protein n=1 Tax=Nostoc sp. FACHB-892 TaxID=2692843 RepID=UPI00168410EB)

HSP 1 Score: 62.0 bits (149), Expect = 2.950e-7
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 3 
Query:  780 ADAHIDATSVPFVEHFMEGGRRRDWVVSSPPYKN-ALLILKNACQIAKVGVAFKLRLNFLEPVPSRAQWLMDNLPSTVKVLSRATYRGRKSSGVEAWLFWKVNLDTAGDSMFFAPKRRNEE 1139
            AD H+DAT     +   E     DW+ ++PPY   A LI+KNA Q A++GVA  L  +FLEP   RA +L  + PS V +L R  +R  K    + W    + +     S F   KR  E+
Sbjct:   83 ADYHLDATLSKSWDSLPEC----DWICTNPPYSEFAALIIKNAYQKARIGVAAFLLTSFLEPCDDRADFLQQHPPSLVLILPRFCFRKDKKG--KRWATDNITI-----SCFVWDKRTTEQ 192
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BLAST of mRNA_P-littoralis_Contig725.6.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 4.280e-6
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  849 DWVVSSPPYKNALLILKNACQIAKVGVAFKLRLNFLEPVPSRAQWL 986
            DWVV++PP+  A  IL NA   A+VGVAF LRL+++EPV +RA WL
Sbjct:   84 DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWL 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE7.140e-2952.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO4.420e-1140.00Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
A0A6H5JGM7_9PHAE5.700e-1137.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00168410EB2.950e-736.36hypothetical protein n=1 Tax=Nostoc sp. FACHB-892 ... [more]
A0A1V5ZCZ4_9BACT4.280e-658.70Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig725contigP-littoralis_Contig725:14562..16886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size1481
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons3
Evalue1.25e-09
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size495
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.163739-UTR-P-littoralis_Contig725:14561..148881680791506.163739-UTR-P-littoralis_Contig725:14561..14888Pylaiella littoralis U1_48UTRP-littoralis_Contig725 14562..14888 -
1680791506.216474-UTR-P-littoralis_Contig725:15990..160091680791506.216474-UTR-P-littoralis_Contig725:15990..16009Pylaiella littoralis U1_48UTRP-littoralis_Contig725 15991..16009 -
1680791506.2278817-UTR-P-littoralis_Contig725:16246..168861680791506.2278817-UTR-P-littoralis_Contig725:16246..16886Pylaiella littoralis U1_48UTRP-littoralis_Contig725 16247..16886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.184636-CDS-P-littoralis_Contig725:14888..152711680791506.184636-CDS-P-littoralis_Contig725:14888..15271Pylaiella littoralis U1_48CDSP-littoralis_Contig725 14889..15271 -
1680791506.201924-CDS-P-littoralis_Contig725:15878..159901680791506.201924-CDS-P-littoralis_Contig725:15878..15990Pylaiella littoralis U1_48CDSP-littoralis_Contig725 15879..15990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig725.6.1prot_P-littoralis_Contig725.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig725 14889..15990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig725.6.1

>prot_P-littoralis_Contig725.6.1 ID=prot_P-littoralis_Contig725.6.1|Name=mRNA_P-littoralis_Contig725.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MFGSKGAFSMDVVAVAVHSALSWRSAGVTPRPMAYITCLPADAHIDATSV
PFVEHFMEGGRRRDWVVSSPPYKNALLILKNACQIAKVGVAFKLRLNFLE
PVPSRAQWLMDNLPSTVKVLSRATYRGRKSSGVEAWLFWKVNLDTAGDSM
FFAPKRRNEEARKP*
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mRNA from alignment at P-littoralis_Contig725:14562..16886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig725.6.1 ID=mRNA_P-littoralis_Contig725.6.1|Name=mRNA_P-littoralis_Contig725.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2325bp|location=Sequence derived from alignment at P-littoralis_Contig725:14562..16886- (Pylaiella littoralis U1_48)
GAACCACCGGTGAGCGAAAAACACCCGATGTTGCAGTGTGGTCGAGCACG
ACTCCGGTGTAACCATCAGAGGGCAGAGGTCAAGACTTTGGCGACACACC
ACATTTGGACGGAGATAGTTTTGAACGTGACGCAGGTTGAGTTATGTTGT
CCAGGGTGTTGATGGGAGGGTGCGAAGTGACCGTCTCAGATAAGGCCGTT
GGTCTTGACTTATCGCCATCTCTCACCTACCTCAACAATCCCATGGTGCT
CCCTTTTTTACTTGAAATTAGACTGCCAAAAGACTCCGCGGGCCTCGTGC
TGCATGCAATAAGAGAGGTCCACGGCGAGGCGATGACGGGGAGCCTAGCC
CGTGCGTGCTTCGCGTGTGGTCGGCCGCATGCCCCGACAGCAGCGCCGCC
TCAACGATGGCGTCATACCGGCCATGGGCTGTACTGGTCGGCGCTTGCGG
ACTGGGCGCAGAGTGTGGTAGATGACTGGGTACACGAGCGCGATATCATT
CAAAATCCGCTGCGGGTGGGTGAATGTGTATGTACGGCCGGTTCTTGGAC
GCCCGTAAGAAGATTGCGAATGGTTCTCTAGCACGGATGGAGGTCGGCCA
GCCATCTCCGCTCGGGCGTTTTCCAACTCTGGCTTCACAGGTCAGCTATT
TTTGGGGGTTCGCAGCCACGGGTACCCCGTCCACAGCAGTATACAGCAGT
AGTGTAAACGCTTCGAAGATATGCGCAGCTGAGTACAAGTACAAGTACAG
CAGTGTAACATCGAAAATTAGGCACCCCCGGCCCCCCGTGCGTGTATCGT
TTAGTTGCACTCTTTACTATACGCTATACAATACTTTACAATGCACTCTT
CCCGGACAACGGCCGCATATTGAACAGATTGAGGACCTGTTAGACCATGT
TCGGATCGAAGGGAGCGTTCTCGATGGATGTGGTAGCCGTGGCGGTGCAC
TCAGCCTTGTCCTGGCGGAGCGCGGGTGTGACGCCACGACCAATGGCATA
CATCACCTGTAAGTTGACCTCTTCATGCAATCGTGTGTGTTGACATTGAT
ATGGTGTGAAATGTCAGTTAGGGTTACTGTCCGTGCCTTCGTTGTTTTTT
TCGTGGTTGTAGTCAAAATGTATGGTGTGCACGTATATGATATCGAACAC
TGTTTTTATTCGCCAATAGCAGCAGCAGTAACAAACGTCATAACGTATAG
CAGTCTTTCACGGGGATTGTTCTTAAAAAGCTGCAGGTGTGCTCTACGGA
GTACTTAGAACTTCGTATTTTGTTTCGCGAAGAGGTCAGCGTAAGCGGTA
AATGCCACAATAAGCAGCAGCAGTTTTTTCGCGGGCTTACGACTAAAAAA
TGGTGCACCTTCTTGTTCACTTAAGCATTCCTTTTTTTGTCCTTGACCAG
TATAACACAAGTATTTACAATGTGTACGTTCATGGGTCAATACCAACAAA
AATAAGCAACGTTTTGTTGACTACTTTTCACGGAGCGTGGAAGAAAACAG
TGTTGAAATTAGATAGAGAAGAAGTACAGAAAATGGCTAGTGGTGGCGAC
AAAGCTCGCGTTAGCCGGCCTGACTGGTGCTATCCTCGCGTGCTTCCGTT
CTGATAACAACCCAGGTTTGCCCGCAGACGCCCATATAGACGCTACGAGC
GTGCCCTTCGTAGAGCACTTCATGGAGGGTGGGCGCCGCCGGGACTGGGT
CGTGTCCAGCCCGCCATACAAGAACGCGTTGCTCATCCTCAAGAACGCCT
GCCAGATCGCCAAAGTTGGTGTTGCTTTCAAACTCCGACTCAATTTTCTC
GAGCCGGTCCCTTCCCGAGCGCAGTGGCTCATGGATAATCTGCCGTCGAC
GGTTAAAGTCTTGAGCCGTGCCACGTACAGGGGGAGGAAATCTTCGGGGG
TCGAAGCTTGGTTATTCTGGAAAGTTAATCTAGATACGGCCGGTGATTCC
ATGTTTTTCGCCCCGAAGCGCCGGAACGAGGAGGCTCGAAAGCCGTAGCG
ATAGCTAAGACGAATAAGCTGTGGTGGTGGGCGTGCGGTTGTAATCCCAT
GGTGGCCGCAAATTAATTCCCGCAGTAGCGACTCATGCGGCACGTTATTG
CGTTACATGGAGGTAGTGCAAGCGACGACATAAAAGTGTATTTTTGTTAT
ATTTCAGCGCGTTGCCAGGTAAACACGCTGACGGTGCGTACAAGACACCA
GAGCTACTGAACTCTTACGGCTGTTCTTATTTTTGTAGAAGAGAGTGGTC
CCGCAGCAGCCAAATTGCATCGGCTTTCCCTCGGATGACGTACATTTTTT
TTTTCTACCCGGACGTACTCCAACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig725:14562..16886-

>mRNA_P-littoralis_Contig725.6.1 ID=mRNA_P-littoralis_Contig725.6.1|Name=mRNA_P-littoralis_Contig725.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig725:14562..16886- (Pylaiella littoralis U1_48)
ATGTTCGGATCGAAGGGAGCGTTCTCGATGGATGTGGTAGCCGTGGCGGT
GCACTCAGCCTTGTCCTGGCGGAGCGCGGGTGTGACGCCACGACCAATGG
CATACATCACCTGTTTGCCCGCAGACGCCCATATAGACGCTACGAGCGTG
CCCTTCGTAGAGCACTTCATGGAGGGTGGGCGCCGCCGGGACTGGGTCGT
GTCCAGCCCGCCATACAAGAACGCGTTGCTCATCCTCAAGAACGCCTGCC
AGATCGCCAAAGTTGGTGTTGCTTTCAAACTCCGACTCAATTTTCTCGAG
CCGGTCCCTTCCCGAGCGCAGTGGCTCATGGATAATCTGCCGTCGACGGT
TAAAGTCTTGAGCCGTGCCACGTACAGGGGGAGGAAATCTTCGGGGGTCG
AAGCTTGGTTATTCTGGAAAGTTAATCTAGATACGGCCGGTGATTCCATG
TTTTTCGCCCCGAAGCGCCGGAACGAGGAGGCTCGAAAGCCGTAG
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