mRNA_P-littoralis_Contig724.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig724.6.1
Unique NamemRNA_P-littoralis_Contig724.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig724.6.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.540e-14
Identity = 61/131 (46.56%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:  817 PRYGRDLSP--GGQGYPGKP--TPHPAGAAASFPYNGVGSDGGARLAELRGLPPPSSTTEREAGRDGG------------QQQQHDAIADYGALSAASGRTWRSSSIASDDGGGSMSASVVGDSEDCGSVA 1161
            PR+GRD S   G   +P  P   P PAG   +FP+N +GSDG    A+LR LPPP S  ER  GR+ G                           +ASGRTWRS S+AS+DGGGS+SAS +GDSEDCGSV+
Sbjct:  504 PRFGRDFSAVGGSDNHPRGPPAAPPPAG---TFPFNRIGSDGVMGAAQLRNLPPPMSMMERVVGREAGVGXXXXXXXXXXXXXXXXXXXXXXXXXSASGRTWRSGSVASEDGGGSISASHLGDSEDCGSVS 631
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig724.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KG36_9PHAE1.540e-1446.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig724contigP-littoralis_Contig724:67423..68804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1310
Hectar predicted targeting categoryother localisation
Exons2
Cds size1308
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791505.4163601-CDS-P-littoralis_Contig724:67422..680881680791505.4163601-CDS-P-littoralis_Contig724:67422..68088Pylaiella littoralis U1_48CDSP-littoralis_Contig724 67423..68088 +
1680791505.43394-CDS-P-littoralis_Contig724:68160..688021680791505.43394-CDS-P-littoralis_Contig724:68160..68802Pylaiella littoralis U1_48CDSP-littoralis_Contig724 68161..68802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig724.6.1prot_P-littoralis_Contig724.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig724 67423..68802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig724.6.1

>prot_P-littoralis_Contig724.6.1 ID=prot_P-littoralis_Contig724.6.1|Name=mRNA_P-littoralis_Contig724.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=436bp
GTGSGRGGVSNKTKVATSKSGCSKKDAPPSAGRKSPSVLKRPEGSKVLAA
GNHAKNKSAASGVVAPPMLQAHGSVSAAAPTSSPRNEARRPATGHRLESS
ETLGGVMDQADTPVLKRLEASLALIVASSNSKKPGMNSAASRVNTSSSSS
AAPRLPERPGGDGPPTLERPGSGSVPPNKVARVSSDPGRQPLSFGGGGVP
DSRKNAGATKRPGAPIFARDGKVGGGRGGRAGPGAAAAGRGAVTAGSPRG
RGEQAGWPGNHVAQRHTSPLPHPRYGRDLSPGGQGYPGKPTPHPAGAAAS
FPYNGVGSDGGARLAELRGLPPPSSTTEREAGRDGGQQQQHDAIADYGAL
SAASGRTWRSSSIASDDGGGSMSASVVGDSEDCGSVAGSVAGSLAGDTDG
EGGGGGGGGSSVGRGRGRSRGGRRSRGGGRGGGRGS
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mRNA from alignment at P-littoralis_Contig724:67423..68804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig724.6.1 ID=mRNA_P-littoralis_Contig724.6.1|Name=mRNA_P-littoralis_Contig724.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1382bp|location=Sequence derived from alignment at P-littoralis_Contig724:67423..68804+ (Pylaiella littoralis U1_48)
GGGACAGGAAGCGGGCGAGGAGGAGTTTCGAACAAGACAAAGGTGGCGAC
TTCCAAGAGCGGTTGCAGCAAGAAGGACGCACCACCTTCAGCGGGACGTA
AGTCCCCCTCGGTCCTAAAAAGACCGGAAGGTTCCAAGGTGCTAGCCGCT
GGTAATCATGCGAAGAACAAGAGCGCCGCTTCTGGAGTCGTGGCCCCTCC
GATGCTGCAGGCGCACGGTAGTGTTTCAGCGGCAGCCCCCACCTCCTCTC
CCAGGAATGAAGCCAGGAGACCAGCAACAGGACACAGACTCGAGAGTTCC
GAAACCCTCGGCGGTGTAATGGACCAAGCAGACACTCCGGTGTTGAAGAG
GCTCGAGGCTTCATTGGCCCTGATTGTTGCTTCTTCGAACTCGAAGAAAC
CCGGAATGAATTCGGCGGCCAGTAGAGTGAACACCTCTTCGTCTTCGTCG
GCGGCGCCGAGGCTTCCGGAGAGACCCGGCGGGGACGGCCCTCCGACGCT
CGAGAGACCCGGCTCGGGCTCGGTCCCCCCCAACAAGGTCGCAAGGGTTT
CTTCCGACCCCGGGAGACAACCGTTGTCATTTGGCGGCGGCGGCGTTCCG
GACAGCAGGAAAAACGCTGGCGCAACGAAGAGGCCGGGGGCACCCATCTT
TGCCAGGGACGGCAAGGTTCCTAGACTAAGCAAGGAAGGGACATCGCGTC
GGAAACCCGTCAAGAAGGGGCCGAGGCGTCCGTCGGAGGTTGGGGGGGGT
CGCGGCGGTAGGGCCGGGCCAGGAGCGGCGGCGGCGGGGCGGGGGGCGGT
GACGGCGGGAAGTCCGAGAGGTAGAGGAGAGCAAGCCGGATGGCCCGGCA
ACCATGTTGCACAGCGCCACACGTCGCCTCTACCGCACCCGCGGTACGGA
CGAGATCTTTCCCCGGGCGGACAGGGTTATCCGGGAAAACCGACGCCGCA
TCCGGCGGGGGCGGCAGCATCGTTTCCATACAATGGGGTGGGTTCTGACG
GCGGGGCCAGGCTGGCGGAACTAAGAGGCCTGCCCCCGCCCTCGTCGACG
ACGGAGAGGGAAGCCGGCCGAGACGGGGGGCAGCAGCAGCAGCACGACGC
CATCGCCGACTACGGCGCCTTGAGCGCGGCGTCCGGGCGAACGTGGCGAA
GCAGCAGCATCGCGAGCGACGATGGGGGGGGAAGCATGAGCGCCTCCGTC
GTCGGCGACTCCGAGGATTGTGGCAGCGTTGCCGGGAGTGTTGCCGGAAG
CTTGGCCGGCGACACGGACGGGGAAGGCGGCGGCGGCGGCGGCGGCGGCA
GCAGCGTCGGGCGCGGTCGAGGTAGAAGCCGCGGGGGCCGCAGGAGTCGG
GGGGGTGGGCGTGGAGGCGGGCGCGGTAGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig724:67423..68804+

>mRNA_P-littoralis_Contig724.6.1 ID=mRNA_P-littoralis_Contig724.6.1|Name=mRNA_P-littoralis_Contig724.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1308bp|location=Sequence derived from alignment at P-littoralis_Contig724:67423..68804+ (Pylaiella littoralis U1_48)
GGGACAGGAAGCGGGCGAGGAGGAGTTTCGAACAAGACAAAGGTGGCGAC
TTCCAAGAGCGGTTGCAGCAAGAAGGACGCACCACCTTCAGCGGGACGTA
AGTCCCCCTCGGTCCTAAAAAGACCGGAAGGTTCCAAGGTGCTAGCCGCT
GGTAATCATGCGAAGAACAAGAGCGCCGCTTCTGGAGTCGTGGCCCCTCC
GATGCTGCAGGCGCACGGTAGTGTTTCAGCGGCAGCCCCCACCTCCTCTC
CCAGGAATGAAGCCAGGAGACCAGCAACAGGACACAGACTCGAGAGTTCC
GAAACCCTCGGCGGTGTAATGGACCAAGCAGACACTCCGGTGTTGAAGAG
GCTCGAGGCTTCATTGGCCCTGATTGTTGCTTCTTCGAACTCGAAGAAAC
CCGGAATGAATTCGGCGGCCAGTAGAGTGAACACCTCTTCGTCTTCGTCG
GCGGCGCCGAGGCTTCCGGAGAGACCCGGCGGGGACGGCCCTCCGACGCT
CGAGAGACCCGGCTCGGGCTCGGTCCCCCCCAACAAGGTCGCAAGGGTTT
CTTCCGACCCCGGGAGACAACCGTTGTCATTTGGCGGCGGCGGCGTTCCG
GACAGCAGGAAAAACGCTGGCGCAACGAAGAGGCCGGGGGCACCCATCTT
TGCCAGGGACGGCAAGGTTGGGGGGGGTCGCGGCGGTAGGGCCGGGCCAG
GAGCGGCGGCGGCGGGGCGGGGGGCGGTGACGGCGGGAAGTCCGAGAGGT
AGAGGAGAGCAAGCCGGATGGCCCGGCAACCATGTTGCACAGCGCCACAC
GTCGCCTCTACCGCACCCGCGGTACGGACGAGATCTTTCCCCGGGCGGAC
AGGGTTATCCGGGAAAACCGACGCCGCATCCGGCGGGGGCGGCAGCATCG
TTTCCATACAATGGGGTGGGTTCTGACGGCGGGGCCAGGCTGGCGGAACT
AAGAGGCCTGCCCCCGCCCTCGTCGACGACGGAGAGGGAAGCCGGCCGAG
ACGGGGGGCAGCAGCAGCAGCACGACGCCATCGCCGACTACGGCGCCTTG
AGCGCGGCGTCCGGGCGAACGTGGCGAAGCAGCAGCATCGCGAGCGACGA
TGGGGGGGGAAGCATGAGCGCCTCCGTCGTCGGCGACTCCGAGGATTGTG
GCAGCGTTGCCGGGAGTGTTGCCGGAAGCTTGGCCGGCGACACGGACGGG
GAAGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGTCGGGCGCGGTCGAGG
TAGAAGCCGCGGGGGCCGCAGGAGTCGGGGGGGTGGGCGTGGAGGCGGGC
GCGGTAGC
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