mRNA_P-littoralis_Contig1180.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1180.4.1
Unique NamemRNA_P-littoralis_Contig1180.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1180.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1180contigP-littoralis_Contig1180:19926..20379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size454
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789495.692579-UTR-P-littoralis_Contig1180:19925..199301680789495.692579-UTR-P-littoralis_Contig1180:19925..19930Pylaiella littoralis U1_48UTRP-littoralis_Contig1180 19926..19930 +
1680789495.7246168-UTR-P-littoralis_Contig1180:20233..203791680789495.7246168-UTR-P-littoralis_Contig1180:20233..20379Pylaiella littoralis U1_48UTRP-littoralis_Contig1180 20234..20379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789495.7098868-CDS-P-littoralis_Contig1180:19930..202331680789495.7098868-CDS-P-littoralis_Contig1180:19930..20233Pylaiella littoralis U1_48CDSP-littoralis_Contig1180 19931..20233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1180.4.1prot_P-littoralis_Contig1180.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1180 19931..20233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1180.4.1

>prot_P-littoralis_Contig1180.4.1 ID=prot_P-littoralis_Contig1180.4.1|Name=mRNA_P-littoralis_Contig1180.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MMVFVHDGCRGATVSGVSMISGQTCLVILGQPCPVEIIRKRGLAVRACPT
FNSTLVVGFLAAGCTFKNKMIGYSGHRRSCRRVPDEKLTTGGAQLQAHHE
*
back to top

mRNA from alignment at P-littoralis_Contig1180:19926..20379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1180.4.1 ID=mRNA_P-littoralis_Contig1180.4.1|Name=mRNA_P-littoralis_Contig1180.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=454bp|location=Sequence derived from alignment at P-littoralis_Contig1180:19926..20379+ (Pylaiella littoralis U1_48)
CGTGGATGATGGTTTTTGTCCATGACGGATGCAGGGGGGCCACAGTATCA
GGTGTGTCCATGATTTCAGGGCAGACGTGCTTGGTGATTTTAGGGCAGCC
GTGCCCGGTAGAAATAATACGGAAACGGGGACTCGCGGTTAGGGCGTGTC
CAACATTCAATAGCACTCTGGTCGTTGGCTTTCTCGCCGCAGGGTGCACA
TTCAAAAACAAAATGATAGGGTATTCTGGTCATAGGCGTTCTTGCCGCAG
GGTGCCCGATGAAAAATTGACCACAgGGGGTGCGCAGTTGCAGGCGCATC
ATGAATGACAAATGGGGAGGGCATACAGGCATAGGTGACATTTCTCAATC
ATGCCGCAGGTTTGCAACCTCATACGGATGACTGATGGCGAATTCGCAGT
AGCAGGTGTTTTCTTTTCCTGGGCTGTAGCGGTAAGATAGTTGCAGCAAC
TTAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1180:19926..20379+

>mRNA_P-littoralis_Contig1180.4.1 ID=mRNA_P-littoralis_Contig1180.4.1|Name=mRNA_P-littoralis_Contig1180.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1180:19926..20379+ (Pylaiella littoralis U1_48)
ATGATGGTTTTTGTCCATGACGGATGCAGGGGGGCCACAGTATCAGGTGT
GTCCATGATTTCAGGGCAGACGTGCTTGGTGATTTTAGGGCAGCCGTGCC
CGGTAGAAATAATACGGAAACGGGGACTCGCGGTTAGGGCGTGTCCAACA
TTCAATAGCACTCTGGTCGTTGGCTTTCTCGCCGCAGGGTGCACATTCAA
AAACAAAATGATAGGGTATTCTGGTCATAGGCGTTCTTGCCGCAGGGTGC
CCGATGAAAAATTGACCACAgGGGGTGCGCAGTTGCAGGCGCATCATGAA
TGA
back to top