mRNA_P-littoralis_Contig718.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig718.2.1
Unique NamemRNA_P-littoralis_Contig718.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig718.2.1 vs. uniprot
Match: A0A6H5KDX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX6_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 5.330e-63
Identity = 113/174 (64.94%), Postives = 132/174 (75.86%), Query Frame = 1 
Query:    1 SDLFKPKPETVALSATEKYEMKKWGIDVDAILWPDGTSPPAWLKAVGNTTNKWANREMAITAAREEQEYVEKVTHRNKKSLIARPAPDYPSSSTTAPPP-LPPWVKELPPVRDGRRQFATGVIIPSLDQHAYPPGGVAEVKRARRREKEAFLKTVF-------VTTARYERESG 498
            SDLF P+PETV LSATEK EM+KWG+DVDA+ W DG  PP W+KAVG+TTNKWANREMAITAAREEQE+VEK+   +  +    P   + S S++ P P  PPWVK+LPPVRDGRRQFA+G IIP L+QH YP GGVAE KRARRREKEAFLKTVF       V T  +++ SG
Sbjct:   28 SDLFHPRPETVVLSATEKREMRKWGLDVDAVAWSDGFVPPPWVKAVGSTTNKWANREMAITAAREEQEFVEKLRALSPSAKTKPPIAHHSSCSSSLPSPSAPPWVKQLPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKEAFLKTVFNSRQAAGVGTGSWKKSSG 201
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BLAST of mRNA_P-littoralis_Contig718.2.1 vs. uniprot
Match: D7G5L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L9_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 2.880e-59
Identity = 111/181 (61.33%), Postives = 125/181 (69.06%), Query Frame = 1 
Query:    1 SDLFKPKPETVALSATEKYEMKKWGIDVDAILWPDGTSPPAWLK-------------------------AVGNTTNKWANREMAITAAREEQEYVEKVTHRNKKSLIARPAPDYPSSSTTAPPP-LPPWVKELPPVRDGRRQFATGVIIPSLDQHAYPPGGVAEVKRARRREKEAFLKTVF 465
            SDLF P+PETV LSATEK EM+KWG++VDA+ WPDG  PP W+K                         AVGNTTNKWANREMAITAAREEQE+VEK+   +       P   + SSS++ P P  PPWVKELPPVRDGRRQFA+G IIP L+QH YP GGVAE KRARRREKE FLKTVF
Sbjct:   10 SDLFHPRPETVVLSATEKREMRKWGLEVDAVAWPDGFVPPPWVKLCSSSVEGTLRTAPRLLRDLSPCLQAVGNTTNKWANREMAITAAREEQEFVEKLRALSPSGKTKPPIAHHSSSSSSLPSPSAPPWVKELPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKETFLKTVF 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig718.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDX6_9PHAE5.330e-6364.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5L9_ECTSI2.880e-5961.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig718contigP-littoralis_Contig718:6450..8732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1137
Hectar predicted targeting categoryother localisation
Exons4
Cds size1137
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791492.7877812-CDS-P-littoralis_Contig718:6449..65811680791492.7877812-CDS-P-littoralis_Contig718:6449..6581Pylaiella littoralis U1_48CDSP-littoralis_Contig718 6450..6581 +
1680791492.7985086-CDS-P-littoralis_Contig718:7054..71461680791492.7985086-CDS-P-littoralis_Contig718:7054..7146Pylaiella littoralis U1_48CDSP-littoralis_Contig718 7055..7146 +
1680791492.8083158-CDS-P-littoralis_Contig718:7510..77691680791492.8083158-CDS-P-littoralis_Contig718:7510..7769Pylaiella littoralis U1_48CDSP-littoralis_Contig718 7511..7769 +
1680791492.8184586-CDS-P-littoralis_Contig718:8078..87321680791492.8184586-CDS-P-littoralis_Contig718:8078..8732Pylaiella littoralis U1_48CDSP-littoralis_Contig718 8079..8732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig718.2.1prot_P-littoralis_Contig718.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig718 6450..8732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig718.2.1

>prot_P-littoralis_Contig718.2.1 ID=prot_P-littoralis_Contig718.2.1|Name=mRNA_P-littoralis_Contig718.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=379bp
SDLFKPKPETVALSATEKYEMKKWGIDVDAILWPDGTSPPAWLKAVGNTT
NKWANREMAITAAREEQEYVEKVTHRNKKSLIARPAPDYPSSSTTAPPPL
PPWVKELPPVRDGRRQFATGVIIPSLDQHAYPPGGVAEVKRARRREKEAF
LKTVFVTTARYERESGNRKKQGGYGGGACAGGAMRAAAVDGTDCGGAAGG
AAADLPVPSGEGAVASDVYATDARNSPLAKPMSATKKTEEEEALLAGSPG
DNARRISSGTGRVPVAEGPGRTRPQEEHTTGGASGKRGRDGGREESPSRN
SETPTTSGLAAATGSENARSPTGVQRRGRLGGALGEQGGSGGGAAAAEPE
ERESRVATPAPVVTSSVRVLDMGVMRSS*
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mRNA from alignment at P-littoralis_Contig718:6450..8732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig718.2.1 ID=mRNA_P-littoralis_Contig718.2.1|Name=mRNA_P-littoralis_Contig718.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2283bp|location=Sequence derived from alignment at P-littoralis_Contig718:6450..8732+ (Pylaiella littoralis U1_48)
TCCGACCTGTTCAAGCCGAAGCCGGAAACTGTGGCCTTATCGGCAACGGA
GAAGTACGAGATGAAAAAGTGGGGCATCGATGTGGACGCTATTTTGTGGC
CGGATGGGACGAGCCCACCAGCCTGGCTTAAGGTAGGGAAAGCTTTGCCC
CCAACAAACGTAAAAACTTCGGCCGCCCCTGCCACACGGTGTGAGGGTTT
TATGGAAACTGCTGCTGTTACTTACTCGCACACCCTGCGGACAATTCGGA
GCTTTTGATATGCGTTCACCAAACAACTTCATGGTTTGTCTCGACGATAA
TGTCATGCATATGTGCTACTTTAGCTGCATTTGCTGTGGGGGCGCAGTCT
GCTCGTATCCAGGCGGCGCTGTTGGGGCCTCTTTCAAGGAAGATTTGATT
TTGGTCGGGAATAAACACCCCTCCTCGAAAGCAAACCTCGTCGATCTATC
ACTCTCTCTTCGTCTTAACGCCATTGTTGCTCTACGCGAACACTCCTAGT
GCACGCAAACCAGGTCCCACACAACACGCCGAAATCCCCGACAAACGCCA
GCTGGCGAGCGATCCCGACGCACTGATGTACTCGCTTTCGTTGCGCATCC
TCCAGGCCGTCGGGAACACGACTAACAAGTGGGCTAACCGAGAGATGGCT
ATAACTGCTGCCAGAGAGGAGCAAGAGTACGTCGAGAAAGTAACGCAGTA
TCCTAGGTACGGTTTCCACTCCAAGACTGGGAAACAAAAACGGAAACATG
TGAACGCAACAGCATTGCCGCTCTTTTGTACGATGACCTTCCTCTGGCCC
CGTGTCTAGCGACAACGTCCATCCGGAGGTGCTTGGTGAACACAGACAGT
CAGTTTGTTTGGATACATGTCAGGCGTGAAGGACGAACACGACAGTGAGA
ACGGACGGGGAACAACAGGTTGGTTGAAACGCGACCCCCCCCGCCGGTAC
CCTTTACCTCCCGACTCGGTTCGTTTGCCATTTTCTCTCAAAACCCACGC
TTCTCGCCGCACCAAAAAACAACGTTTGACCGAAACCACCACCACCACCA
ATCTTGACAAGCAGGAACAAGAAGTCTCTTATCGCACGCCCTGCACCGGA
CTACCCTTCTTCTTCGACCACAGCCCCGCCGCCGTTGCCACCATGGGTGA
AGGAGTTGCCCCCCGTGCGCGACGGACGCAGGCAGTTCGCCACCGGCGTC
ATCATCCCCTCGCTGGACCAGCACGCGTATCCGCCGGGAGGAGTCGCGGA
GGTGAAGCGCGCGCGTCGGCGCGAAAAGGAGGCTTTCCTGAAAACCGTGT
TCGTTACAACCGCCAGGTACGTCACCAACGCCAACACCAACCCTGTCGCC
CCAAGAAGAGCCGCTGATGCTGGTGGTGATGCTAATGCTGGTGCTGCCGT
TTGTAATACCGCCGGTGGTGGTGCTTATGACGCTGGTGGCCCTGCGGAGG
AGCGACCGCAGCCGATGTGCGCTCCTCCCGGCGAGCAGGAGGCGGGCGAG
GGACTAGGGCATAGGAGCGGCGGCCCGGGGGGGGGCGTGGTAGGCAAGCA
CAAACAAGCGACCCGAGGAGGTTTACCTCGTGGCACCGGGTTCACTGGCG
ATGGCAGGGCGGTGGCTGGACGACGACAGGAACGAGAATCCGGAAACAGG
AAAAAACAGGGCGGCTACGGCGGAGGTGCTTGTGCCGGAGGGGCGATGCG
TGCTGCTGCTGTTGACGGTACCGATTGTGGAGGTGCCGCTGGCGGTGCTG
CTGCTGATCTGCCTGTTCCGTCGGGTGAAGGCGCAGTCGCCTCCGATGTA
TATGCCACAGACGCGCGGAACAGCCCTCTAGCGAAACCCATGTCAGCGAC
GAAGAAAACGGAAGAGGAGGAAGCACTCCTGGCCGGCAGTCCTGGAGATA
ACGCTCGCAGGATAAGCAGCGGCACCGGTAGAGTACCTGTAGCAGAAGGG
CCGGGCCGTACCCGACCCCAAGAGGAACATACGACGGGGGGCGCATCAGG
GAAGAGAGGCAGGGATGGCGGCCGCGAGGAATCTCCTAGCCGCAACAGTG
AAACCCCTACGACCTCTGGCCTAGCGGCCGCCACTGGAAGTGAAAACGCT
CGTAGTCCCACGGGTGTCCAACGCCGGGGCCGGCTAGGAGGGGCATTAGG
GGAGCAAGGAGGAAGCGGGGGAGGAGCTGCGGCCGCCGAACCCGAGGAAA
GGGAATCAAGAGTAGCGACCCCGGCTCCGGTGGTGACATCATCCGTTAGG
GTGCTCGATATGGGCGTCATGAGGTCCTCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig718:6450..8732+

>mRNA_P-littoralis_Contig718.2.1 ID=mRNA_P-littoralis_Contig718.2.1|Name=mRNA_P-littoralis_Contig718.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1137bp|location=Sequence derived from alignment at P-littoralis_Contig718:6450..8732+ (Pylaiella littoralis U1_48)
TCCGACCTGTTCAAGCCGAAGCCGGAAACTGTGGCCTTATCGGCAACGGA
GAAGTACGAGATGAAAAAGTGGGGCATCGATGTGGACGCTATTTTGTGGC
CGGATGGGACGAGCCCACCAGCCTGGCTTAAGGCCGTCGGGAACACGACT
AACAAGTGGGCTAACCGAGAGATGGCTATAACTGCTGCCAGAGAGGAGCA
AGAGTACGTCGAGAAAGTAACGCACAGGAACAAGAAGTCTCTTATCGCAC
GCCCTGCACCGGACTACCCTTCTTCTTCGACCACAGCCCCGCCGCCGTTG
CCACCATGGGTGAAGGAGTTGCCCCCCGTGCGCGACGGACGCAGGCAGTT
CGCCACCGGCGTCATCATCCCCTCGCTGGACCAGCACGCGTATCCGCCGG
GAGGAGTCGCGGAGGTGAAGCGCGCGCGTCGGCGCGAAAAGGAGGCTTTC
CTGAAAACCGTGTTCGTTACAACCGCCAGGTACGAACGAGAATCCGGAAA
CAGGAAAAAACAGGGCGGCTACGGCGGAGGTGCTTGTGCCGGAGGGGCGA
TGCGTGCTGCTGCTGTTGACGGTACCGATTGTGGAGGTGCCGCTGGCGGT
GCTGCTGCTGATCTGCCTGTTCCGTCGGGTGAAGGCGCAGTCGCCTCCGA
TGTATATGCCACAGACGCGCGGAACAGCCCTCTAGCGAAACCCATGTCAG
CGACGAAGAAAACGGAAGAGGAGGAAGCACTCCTGGCCGGCAGTCCTGGA
GATAACGCTCGCAGGATAAGCAGCGGCACCGGTAGAGTACCTGTAGCAGA
AGGGCCGGGCCGTACCCGACCCCAAGAGGAACATACGACGGGGGGCGCAT
CAGGGAAGAGAGGCAGGGATGGCGGCCGCGAGGAATCTCCTAGCCGCAAC
AGTGAAACCCCTACGACCTCTGGCCTAGCGGCCGCCACTGGAAGTGAAAA
CGCTCGTAGTCCCACGGGTGTCCAACGCCGGGGCCGGCTAGGAGGGGCAT
TAGGGGAGCAAGGAGGAAGCGGGGGAGGAGCTGCGGCCGCCGAACCCGAG
GAAAGGGAATCAAGAGTAGCGACCCCGGCTCCGGTGGTGACATCATCCGT
TAGGGTGCTCGATATGGGCGTCATGAGGTCCTCGTAG
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