mRNA_P-littoralis_Contig717.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig717.24.1
Unique NamemRNA_P-littoralis_Contig717.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5K9L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.110e-17
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 2 
Query:  971 GGTPASAPPAPADQAGNPPATLVAAVRAAIKNGANLSKTKMYDYGKFSYTGKAILAVIKTEDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPLRREELDKKQTG 1318
            G TP S P   + +    P  LV AVR AI +GA+++  KM D+ + +Y    +L VI  ED A    +V+TAGRRKSK CVP  VEL+V  RFR+ +AAS+T L R ELD K+TG
Sbjct:   29 GETPVSKPLTASPETVEVPEALVLAVRTAIGSGASINPKKMMDWEENAYLAGRVLEVIAVEDRASG-ADVTTAGRRKSKYCVPLAVELMVAERFRERLAASRTQLSRTELDNKETG 143
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BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5JG68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG68_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.230e-15
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 2 
Query:  971 GGTPASAPPAPADQAGNPPATLVAAVRAAIKNGANLSKTKMYDYGKFSYTGKAILAVIKTEDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPLRREELDKKQTGKTRHINLLVW 1348
            G TPAS     + +    P +LV AVRAAI++GA++   KM D+ + +Y    +L VI  ED A   G  +TAGRRKSK+CVPR VEL+V  RFR+ +AAS+T L             R +   +W
Sbjct:   29 GETPASKALTASPETVEVPESLVLAVRAAIRSGASIHPKKMMDWDENAYLASRVLEVIVDEDRASGAG-ATTAGRRKSKHCVPRAVELMVAERFRERLAASRTQLXXXXXXXXXXXNKRSVYFKLW 153
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BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5K842_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K842_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.260e-14
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 2 
Query:  971 GGTPASAPPAPADQAGNPPATLVAAVRAAIKNGANLSKTKMYDYGKFSYTGKAILAVIKTEDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPLRREELDKKQTGKTRHINLLVW 1348
            G TPAS P   + +    P  LV AVR+AI++GA+++  KM D+ + +Y    +L VI  ED A   G V+TAGRRKSK+CVPR VEL+V  RFR+ +AAS+T L             R +   +W
Sbjct:  224 GETPASKPLTASPETVEVPEALVMAVRSAIRSGASINPKKMMDWEENAYLASRVLEVIADEDRASGAG-VTTAGRRKSKHCVPRAVELMVAERFRERLAASRTQLXXXXXXXXXXXNKRSVYFELW 348
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BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5KAK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.670e-14
Identity = 63/167 (37.72%), Postives = 85/167 (50.90%), Query Frame = 2 
Query:  875 EGEKPCRSGEGVGCDGRDLEKTKSILGRHG---------R*GGTPASAPPAPADQAGNPPATLVAAVRAAIKNGANLSKTKMYDYGKFSYTGKAILAVIKTEDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPLRREELDKKQTGKTRHINLLVW 1348
            EGE+    GEG     + L     + GR             G TPAS P   +      P  LV AVR+AI++GA+++  KM D+ + +Y    +L VI  ED A   G V+TAGRRKSK+CVPR VEL+V  RFR+ +AAS+T L             R +   +W
Sbjct:  203 EGEEQLSVGEGPSXLEKALADVDKVCGRPSPYYADLEDKATGETPASKPLKASPATVEVPEALVLAVRSAIRSGASINPKKMMDWEENAYLASRVLEVIADEDRASGAG-VTTAGRRKSKHCVPRAVELMVAERFRERLAASRTQLXXXXXXXXXXXNKRSVYFELW 368
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BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5KAY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.160e-14
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 2 
Query: 1091 MYDYGKFSYTGKAILAVIKTEDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPLRREELDKKQTGKTRHINLLVW 1348
            M D+ + +Y    +L VI  ED A   G  +TAGRRKSK+CVPR VEL+V  RFR+ +AAS+T L R ELD K+TG  R +   +W
Sbjct:    1 MMDWDENAYLASRVLEVIADEDRASGAG-ATTAGRRKSKHCVPRAVELMVAERFRERLAASRTQLSRTELDNKETGSKRSVYFELW 85
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BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5K5T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.880e-6
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 2 
Query: 1112 SYTGKAILAVIKTEDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPLRREELDKKQTGKTRHINLLVW 1348
            ++    +L V+  ED A    +V+TAGRRK+K+CVPR VEL++   FR+ +AAS+T L          G  R +    W
Sbjct:   20 AHLASCVLEVMADEDRASG-ADVTTAGRRKNKHCVPRAVELMIPEHFRERLAASRTQLSXXXXXXXXXGNKRSVYFEQW 97
[Close]
BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Match: A0A6H5JPE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPE9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.250e-6
Identity = 48/151 (31.79%), Postives = 66/151 (43.71%), Query Frame = 2 
Query:  977 TPASAPPAPADQAGNPPATLVAAVRAAIKNGANLSKTKMYDYGKFSYTGKAILAVIKT------------------------------------------------EDAADREGEVSTAGRRKSKNCVPRWVELLVDTRFRDGVAASKTPL 1285
            TPAS P   + +    P  LV AVR AI +GA+++  KM D+ + +Y    +L VI                                                  ED   R  +V+TAGRRKSK+CVPR VEL++  RFR+ + AS+T L
Sbjct:  103 TPASKPLTASPETVEVPEALVLAVRTAIGSGASINPKKMMDWEENAYLASRVLEVIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDRTPR-ADVTTAGRRKSKHCVPRAVELMIAERFRERLTASRTQL 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig717.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K9L9_9PHAE4.110e-1748.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG68_9PHAE4.230e-1542.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K842_9PHAE1.260e-1442.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAK3_9PHAE1.670e-1437.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY6_9PHAE2.160e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5T1_9PHAE3.880e-637.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPE9_9PHAE9.250e-631.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig717contigP-littoralis_Contig717:120223..122960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1916
Hectar predicted targeting categoryother localisation
Exons2
Cds size849
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791492.2962177-UTR-P-littoralis_Contig717:120222..1210981680791492.2962177-UTR-P-littoralis_Contig717:120222..121098Pylaiella littoralis U1_48UTRP-littoralis_Contig717 120223..121098 -
1680791492.3366268-UTR-P-littoralis_Contig717:122769..1229601680791492.3366268-UTR-P-littoralis_Contig717:122769..122960Pylaiella littoralis U1_48UTRP-littoralis_Contig717 122770..122960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791492.3118625-CDS-P-littoralis_Contig717:121098..1211671680791492.3118625-CDS-P-littoralis_Contig717:121098..121167Pylaiella littoralis U1_48CDSP-littoralis_Contig717 121099..121167 -
1680791492.3261957-CDS-P-littoralis_Contig717:121989..1227691680791492.3261957-CDS-P-littoralis_Contig717:121989..122769Pylaiella littoralis U1_48CDSP-littoralis_Contig717 121990..122769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig717.24.1prot_P-littoralis_Contig717.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig717 121099..122769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig717.24.1

>prot_P-littoralis_Contig717.24.1 ID=prot_P-littoralis_Contig717.24.1|Name=mRNA_P-littoralis_Contig717.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=283bp
MAERERSKRKKVSPAKLLDTGVSGAAAGLGSSVKPIAPRLPGMTGTWAGG
ARPSGYLSGKSTDGAERTLAVTAISTDGQFDSLRADSSKAGSDVSLFDDD
DNNSRNIVSLFDDDDNNSSSDDVQLLERGKDNSSGESHGGRNLSSCEEEK
EEEKEAEKEDGSDDAGDESDDGGDVGGSNVAQGGASKLNQAKVALKKSVD
RNSGKPYAATPTTLLREMCATEKVTGMSREKNPAVLAKALAAMDEILKRP
SPFWADMEDKAGLQLPHHQPLRTRPEILQLRL*
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mRNA from alignment at P-littoralis_Contig717:120223..122960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig717.24.1 ID=mRNA_P-littoralis_Contig717.24.1|Name=mRNA_P-littoralis_Contig717.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2738bp|location=Sequence derived from alignment at P-littoralis_Contig717:120223..122960- (Pylaiella littoralis U1_48)
TCCATATATATGGACATCAGCCGGCGTGTGATGACGGTCGATGACGTGGA
TTTTAGGAAACAGCAGTTACGCCGCATCCCACGATACTGCTGTACTGCTG
CAACTGCTGTCGAGACAGCGAGACACCCAGAGACACAGCTCACACGAAAT
ACTCACTAGCGCACAGAACACAGACGACAGCTACTTACAGTATGGCGGAG
AGAGAAAGGAGCAAGAGGAAGAAGGTGTCGCCGGCCAAATTGCTGGACAC
TGGCGTAAGCGGCGCTGCTGCTGGATTGGGCTCTTCAGTCAAACCGATAG
CACCAAGGTTGCCCGGCATGACCGGGACATGGGCGGGCGGTGCTCGCCCC
AGTGGCTATCTCAGCGGAAAAAGCACAGACGGTGCTGAACGGACCCTGGC
CGTGACGGCAATATCGACCGATGGCCAGTTTGATTCGCTGCGGGCGGACA
GCAGTAAAGCTGGCAGCGATGTGTCGTTGTTTGATGATGACGACAATAAT
AGCAGAAATATTGTGTCGTTGTTTGATGATGACGACAATAATAGCAGCAG
TGATGATGTTCAACTTCTTGAACGAGGCAAGGACAACAGCAGCGGAGAGA
GCCACGGCGGTAGAAACCTGAGCAGTTGTGAGGAAGAGAAAGAGGAAGAG
AAAGAAGCAGAGAAGGAGGATGGCAGCGATGATGCGGGAGACGAGTCTGA
CGATGGGGGTGATGTTGGCGGATCGAATGTAGCGCAGGGTGGAGCATCGA
AACTCAATCAAGCAAAGGTGGCGCTGAAAAAGTCCGTCGATCGCAACTCG
GGCAAGCCCTACGCTGCCACTCCCACCACGCTTCTGCGTGAAATGTGCGC
CACCGAAAAGGTTACTGGCATGTCGAGGGAGAAAAACCCTGCCGTTCTGG
CGAAGGCGTTGGCTGCGATGGACGAGATCTTGAAAAGACCAAGTCCATTC
TGGGCCGACATGGAAGATAAGGTGGCAGTTGAGACAAGCAGATTTGCTGT
AGTGTTCAACTTCTGCTTGCTGTGAACATGTGAGTGATGATGTTGGAAAC
AAAATGTGTGTGAGGCGGTACGCTTGTGGGCCTGCCGTGTTCGTAGCACG
GATGTCGCGTTCGGGCCGGTTCATGAAACATGGGTTGTTTTTGAGGTATT
TGGGTCTTCTGGTTACCGTGACACTCTTCCCGGTACTTTCCTTGCTGCTG
CCTTTGTGTTTGTTCTCTCTTTGAATAGAAGAAATCCATGACACCTCCGT
TTGATTGCCGGATTCTCTTTGGGTACTCGAGAAAAAACGTACATTTTGGT
GTACTCCCATAAAATTCATGCAGTTTGCTTTCTCTCATTCCTGTTCGACT
TCCTGTTCGACTTGTTCTATCATTTGCAAGACCGCGCAAAGATAGTGTGT
GGTGTGTTTTAGTTCCATCTCGTCTGGGCACCAGTGCATACCTTTAGGTC
GAAGTGGGCGCACCAGCCTGGGTCACACACAGAGGGTAGTGCAGAGACAA
AAAACGTTTACTGTAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCACAACA
GCAGCAACAACAAAAAAATCGATAGTACAGACAACAGTAGGCGCAGTGCC
AGACCCCAACCCATGTACGAGCATGGAAGGCTCTCATACAACTCTGTACC
TCTAGGGGACTAAATTGCTGTACTTTCCTTCCTGCTGTCACCCGCTCTTG
GTGATATTCTTCAATTTGAGTATCATACCCCCTCGTGCCAACGTGACCAC
CCTTTTGACCTACCTCACCGCACGATTGCAATTTATTTTCAAGGCGGGAC
TCCAGCTTCCGCACCACCAGCCCCTGCGGACCAGGCCGGAAATCCTCCAG
CTACGCTTGTAGCAGCGGTGAGGGCGGCGATCAAAAACGGGGCGAATTTG
TCCAAGACGAAGATGTACGATTATGGTAAGTTTTCGTACACGGGGAAGGC
CATCCTGGCTGTCATCAAGACTGAAGATGCCGCCGATAGAGAGGGAGAGG
TATCGACGGCTGGCCGCAGAAAGAGCAAAAATTGTGTGCCTCGATGGGTG
GAACTTCTCGTCGACACCCGCTTCAGGGATGGAGTTGCCGCTAGCAAGAC
ACCGCTCCGTAGGGAGGAGCTTGACAAGAAGCAAACGGGAAAGACGAGGC
ATATCAACCTTTTGGTCTGGGATGGATGGTTTATCGCTGCCATGGTAAGG
GCAGATTTTGTTCTAGCCCCGTTTCTCTCGTTGGGATGGAGGGTGTACCG
GGGTCGGTTTACAGCAGCAGCATACAGTGAATGGGTGAGGTTGAGCTGGA
ATGAGTCAGACAGTTTCTCTCCGAACACTTCATTGAATTTTATTATTTTA
AATGTAAATTTTATTATTTTAGATGTGCGTTCATCTGTGCGCTACTTCAC
CAAGGAAGAAGTTTAATGTGAGGAGAGTACGGGAATGCACTGTTGCACTA
CCGTAGGCGAGTGTTGGTTGGGGGGTGGAAAGTTGCACACTTTCTTGTCG
CAAAATACTGCTGCGATTATGGTTGTCCCGCCAGTGATGGGTTTGAATGA
ATTTTCAACAAATACAAAATGGTTCTCGACAGGATTTCCCAAGCAGGCAT
ACACCAGAGGTTGTGGACTACACACGTGTAACAATATGCGTGACGGCATT
TCTCAAACTCACGTTTAGACAGATCCACATCGTTTCAGACGATTTACCTC
GAGAACGTTGTCATGCACGCATGCGAGCGATGCTAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig717:120223..122960-

>mRNA_P-littoralis_Contig717.24.1 ID=mRNA_P-littoralis_Contig717.24.1|Name=mRNA_P-littoralis_Contig717.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=849bp|location=Sequence derived from alignment at P-littoralis_Contig717:120223..122960- (Pylaiella littoralis U1_48)
ATGGCGGAGAGAGAAAGGAGCAAGAGGAAGAAGGTGTCGCCGGCCAAATT
GCTGGACACTGGCGTAAGCGGCGCTGCTGCTGGATTGGGCTCTTCAGTCA
AACCGATAGCACCAAGGTTGCCCGGCATGACCGGGACATGGGCGGGCGGT
GCTCGCCCCAGTGGCTATCTCAGCGGAAAAAGCACAGACGGTGCTGAACG
GACCCTGGCCGTGACGGCAATATCGACCGATGGCCAGTTTGATTCGCTGC
GGGCGGACAGCAGTAAAGCTGGCAGCGATGTGTCGTTGTTTGATGATGAC
GACAATAATAGCAGAAATATTGTGTCGTTGTTTGATGATGACGACAATAA
TAGCAGCAGTGATGATGTTCAACTTCTTGAACGAGGCAAGGACAACAGCA
GCGGAGAGAGCCACGGCGGTAGAAACCTGAGCAGTTGTGAGGAAGAGAAA
GAGGAAGAGAAAGAAGCAGAGAAGGAGGATGGCAGCGATGATGCGGGAGA
CGAGTCTGACGATGGGGGTGATGTTGGCGGATCGAATGTAGCGCAGGGTG
GAGCATCGAAACTCAATCAAGCAAAGGTGGCGCTGAAAAAGTCCGTCGAT
CGCAACTCGGGCAAGCCCTACGCTGCCACTCCCACCACGCTTCTGCGTGA
AATGTGCGCCACCGAAAAGGTTACTGGCATGTCGAGGGAGAAAAACCCTG
CCGTTCTGGCGAAGGCGTTGGCTGCGATGGACGAGATCTTGAAAAGACCA
AGTCCATTCTGGGCCGACATGGAAGATAAGGCGGGACTCCAGCTTCCGCA
CCACCAGCCCCTGCGGACCAGGCCGGAAATCCTCCAGCTACGCTTGTAG
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