mRNA_P-littoralis_Contig716.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig716.31.1
Unique NamemRNA_P-littoralis_Contig716.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.570e-35
Identity = 83/155 (53.55%), Postives = 114/155 (73.55%), Query Frame = 1
Query:    4 ESETDSGEVGTGGNLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLPP 468
            ESET+ G VG+ GNL STAIRTFAGAGE QSRA+V+K+ A V +  A E FRQ+R+ Q +++  AV+TL+D+V A++ LDEEAA RARE AAE R+  K+ N++G  E S+ +SA+Y+ LRAA++  + QPL+DF++    AATTP+  AG   P
Sbjct:  321 ESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTPSPEAGSSTP 475          
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-18
Identity = 72/144 (50.00%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLPPTS 474
            +L S+AIR FAGAGE QSRA+VKKE AAV A  AQE+  + +   T KLV AV+ LS AVV++Q LDEEAA RAR   A   +  KI +L+G+ E +  E  +  ALRA++   +     DF+  P SA T PA  AGG P TS
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFT-LEGPKAMALRASISALYDMDDADFMPKPISAPTPPA--AGGAPSTS 203          
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5J848_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J848_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.490e-18
Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 1
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGA 453
            +L S AIR F GAGE +S A+VK ETAAV A  AQ + R+ +   T KLV AV+ LS AVV++Q LDEEAAGRAR   A + +  KI +LKG  E + P   +   LRAA+   + QP + FL  P SAAT P +GA
Sbjct:   70 DLSSNAIRMFTGAGEIESLAQVK-ETAAVAAANAQLQARRVQETNTGKLVTAVEALSAAVVSRQSLDEEAAGRARLADAREAKKAKIADLKGMLEYA-PSEQKTMELRAAIMAAYEQPDSYFLAKPISAATPPGAGA 204          
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.560e-13
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAAL 375
            +L S+AIR FAGAGE QSRA+VKKE AAV A  AQE+ R+ +   T  LV AV  LS AVV++Q LDEEAA RAR   A   +  KI +L+G+ E +  E     ALRA++
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASI 172          
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.520e-10
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQ---TEKLVGAVQTLSDAVVAKQRLDEEAAGRAR 267
            +L S+AIR FAG GE QSRA+VKKE AAV A  AQE+  Q R  Q   T KLV AV+ LS AVV++Q LDEEAA RAR
Sbjct:  189 DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266          
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.390e-8
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAR 267
            +L S+AIR FAG GE QSRA++KKE A V A  AQE+ R+ +   T KLV AV  LS AVV+ Q LDEEAA R R
Sbjct:  150 DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224          
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.620e-8
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   46 LDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 255
            L S+AIRTFAGA E QSRA+VK E  AV A  AQE+ R+ +   T KLV AV+ LS AVV++Q LDE+AA
Sbjct:  165 LSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig716.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.570e-3553.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3M7_9PHAE1.020e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J848_9PHAE8.490e-1850.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE2.560e-1352.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE8.520e-1062.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE2.390e-858.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE2.620e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig716contigP-littoralis_Contig716:125969..126503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size536
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791490.9062984-CDS-P-littoralis_Contig716:125968..1265021680791490.9062984-CDS-P-littoralis_Contig716:125968..126502Pylaiella littoralis U1_48CDSP-littoralis_Contig716 125969..126502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig716.31.1prot_P-littoralis_Contig716.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig716 125969..126502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig716.31.1

>prot_P-littoralis_Contig716.31.1 ID=prot_P-littoralis_Contig716.31.1|Name=mRNA_P-littoralis_Contig716.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
EESETDSGEVGTGGNLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQE
KFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATK
IKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASG
AGGLPPTSGVALSAAATPALAAMPGLSM
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mRNA from alignment at P-littoralis_Contig716:125969..126503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig716.31.1 ID=mRNA_P-littoralis_Contig716.31.1|Name=mRNA_P-littoralis_Contig716.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=535bp|location=Sequence derived from alignment at P-littoralis_Contig716:125969..126503+ (Pylaiella littoralis U1_48)
GAGGAGAGCGAGACTGACTCGGGCGAGGTGGGGACCGGCGGCAACCTTGA CTCGACGGCCATCCGGACGTTCGCCGGCGCCGGTGAGGCTCAAAGCCGAG CGAAGGTCAAGAAGGAAACCGCGGCGGTGCACGCAAACGTCGCGCAAGAG AAGTTTCGCCAACAAAGAATGGGCCAAACAGAAAAACTGGTAGGGGCCGT GCAGACGCTGTCGGACGCCGTTGTCGCGAAGCAGCGTCTGGACGAAGAGG CCGCCGGTAGGGCACGCGAGATGGCGGCAGAGCAGCGAAGGGCGACAAAG ATAAAAAACCTCAAAGGGGAATATGAATTATCGGATCCGGAGTCAGCCGA GTACTTCGCCCTACGTGCCGCACTCAGGTTTACATTCCGGCAACCCCTGA CCGACTTCTTGGACAACCCCGCCTCGGCTGCGACAACACCTGCGTCAGGA GCTGGGGGCCTTCCCCCGACTTCGGGCGTCGCATTGTCTGCTGCGGCAAC GCCTGCTCTTGCTGCCATGCCGGGACTTTCGATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig716:125969..126503+

>mRNA_P-littoralis_Contig716.31.1 ID=mRNA_P-littoralis_Contig716.31.1|Name=mRNA_P-littoralis_Contig716.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig716:125969..126503+ (Pylaiella littoralis U1_48)
GAGGAGAGCGAGACTGACTCGGGCGAGGTGGGGACCGGCGGCAACCTTGA
CTCGACGGCCATCCGGACGTTCGCCGGCGCCGGTGAGGCTCAAAGCCGAG
CGAAGGTCAAGAAGGAAACCGCGGCGGTGCACGCAAACGTCGCGCAAGAG
AAGTTTCGCCAACAAAGAATGGGCCAAACAGAAAAACTGGTAGGGGCCGT
GCAGACGCTGTCGGACGCCGTTGTCGCGAAGCAGCGTCTGGACGAAGAGG
CCGCCGGTAGGGCACGCGAGATGGCGGCAGAGCAGCGAAGGGCGACAAAG
ATAAAAAACCTCAAAGGGGAATATGAATTATCGGATCCGGAGTCAGCCGA
GTACTTCGCCCTACGTGCCGCACTCAGGTTTACATTCCGGCAACCCCTGA
CCGACTTCTTGGACAACCCCGCCTCGGCTGCGACAACACCTGCGTCAGGA
GCTGGGGGCCTTCCCCCGACTTCGGGCGTCGCATTGTCTGCTGCGGCAAC
GCCTGCTCTTGCTGCCATGCCGGGACTTTCGATG
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