mRNA_P-littoralis_Contig716.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig716.30.1
Unique NamemRNA_P-littoralis_Contig716.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.660e-17
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   25 GEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNRLGKRKA 174
            G YP R   WM PYL+TYCLIGRPS SEDPDLRTAR TSGP+ R GK+KA
Sbjct:   92 GGYPDRSNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRAGKQKA 141
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.670e-17
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   22 SGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNRLGKRKA 174
            SG YP RP  WM PYL+T CL+GRPS SEDPDLRTAR TSGP+ R GK+KA
Sbjct:  116 SGGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGRGGKQKA 166
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.460e-17
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   25 GEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNRLGKRKA 174
            G YP RP  WM PYL+TYCLIGRPS SEDPDLRT R TSGP+ R GK+K+
Sbjct:  133 GGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLRTTRKTSGPKGRGGKQKS 182
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.640e-16
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   16 GESGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNRLGKRKA 174
            G+ GEYP RP  WM P L+ YC IGRPSDSEDPDL TAR TSGP  R  KRK+
Sbjct:  250 GDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRKS 302
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5JWI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.840e-15
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 ESGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNR 156
            E G +P RP  WM  YL+T+CLIGRP  SEDPDLRTAR TSGP+ R
Sbjct:   41 EEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGR 86
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.510e-14
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   25 GEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNRLGKRKA 174
            G  P RP  WM PYL+TYCLIGRPS SEDPDLRTAR TSG + R GK+ A
Sbjct:   78 GGCPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGLKGRGGKQNA 127
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5KE98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE98_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.040e-13
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 ESGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNR 156
            E+G +P RP  WM  Y++T+CLIGRP  SEDPDLRT R TSGP+ R
Sbjct:   23 EAGGFPQRPNKWMHQYVLTFCLIGRPCSSEDPDLRTVRKTSGPKGR 68
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5KF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF57_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-13
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 ESGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNR 156
            E G +P RP  WM  YL+T+CLIGRP  SEDPDLRTAR TSGP+ R
Sbjct:  168 EEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGR 213
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BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.880e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   55 MSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNRLGKRKA 174
            M PYL+TYCLIGRPS SEDPDLRTAR TSGP+ R GK+KA
Sbjct:    1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKA 40
[Close]
BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.740e-12
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   19 ESGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPRNR 156
            E G +P RP  WM  YL+T+CLIGRP  SEDPDLRTAR TSG + R
Sbjct:  184 EEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGR 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig716.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JWP9_9PHAE1.660e-1774.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE2.670e-1772.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK1_ECTSI8.460e-1772.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L481_9PHAE8.640e-1667.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWI7_9PHAE7.840e-1567.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE2.510e-1470.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE98_9PHAE1.040e-1363.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF57_9PHAE1.060e-1367.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE4.880e-1380.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBX2_9PHAE1.740e-1265.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig716contigP-littoralis_Contig716:125759..125952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size196
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791490.871591-CDS-P-littoralis_Contig716:125758..1259501680791490.871591-CDS-P-littoralis_Contig716:125758..125950Pylaiella littoralis U1_48CDSP-littoralis_Contig716 125759..125950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig716.30.1prot_P-littoralis_Contig716.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig716 125759..125950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig716.30.1

>prot_P-littoralis_Contig716.30.1 ID=prot_P-littoralis_Contig716.30.1|Name=mRNA_P-littoralis_Contig716.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
SGGLGGESGEYPARPTNWMSPYLITYCLIGRPSDSEDPDLRTARVTSGPR
NRLGKRKAGLRATT
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mRNA from alignment at P-littoralis_Contig716:125759..125952+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig716.30.1 ID=mRNA_P-littoralis_Contig716.30.1|Name=mRNA_P-littoralis_Contig716.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig716:125759..125952+ (Pylaiella littoralis U1_48)
TCCGGAGGTCTGGGCGGCGAGTCCGGAGAGTATCCGGCAAGGCCCACCAA
TTGGATGTCTCCGTATCTTATCACCTACTGTCTTATCGGTAGACCCAGTG
ACAGCGAGGATCCCGACCTGAGAACCGCCCGGGTGACGAGTGGCCCTCGA
AACCGTTTGGGAAAGCGGAAGGCCGGGTTGAGAGCCACGACAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig716:125759..125952+

>mRNA_P-littoralis_Contig716.30.1 ID=mRNA_P-littoralis_Contig716.30.1|Name=mRNA_P-littoralis_Contig716.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig716:125759..125952+ (Pylaiella littoralis U1_48)
TCCGGAGGTCTGGGCGGCGAGTCCGGAGAGTATCCGGCAAGGCCCACCAA
TTGGATGTCTCCGTATCTTATCACCTACTGTCTTATCGGTAGACCCAGTG
ACAGCGAGGATCCCGACCTGAGAACCGCCCGGGTGACGAGTGGCCCTCGA
AACCGTTTGGGAAAGCGGAAGGCCGGGTTGAGAGCCACGACA
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