mRNA_P-littoralis_Contig715.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig715.10.1
Unique NamemRNA_P-littoralis_Contig715.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig715.10.1 vs. uniprot
Match: A0A6H5JD04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD04_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.190e-27
Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAKMAAMKEEEQQSAKRQR*IKSLKDKTAMGLGNEAVNKQKLEMLLDEE 365
            ASK A+DRACPNGDPVSRRKAAA+   Q+KKAA+                 KRKRL+VL  AT GMT+VA +LAK+AA+KE EQ+S KRQ+ I +LK K  +G+G+EA  KQ L  LLDE+
Sbjct:  180 ASKPAVDRACPNGDPVSRRKAAAFSAEQEKKAARAEADKANAKRASEEVQNKRKRLQVLTAATEGMTDVATNLAKLAAIKEAEQESKKRQKKIDALKTKLGLGIGDEATIKQTLSGLLDED 300
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BLAST of mRNA_P-littoralis_Contig715.10.1 vs. uniprot
Match: A0A6H5KIH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.230e-25
Identity = 79/132 (59.85%), Postives = 92/132 (69.70%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAKMAAMKEEEQQSAKRQR*-----------IKSLKDKTAMGLGNEAVNKQKLEMLLDEE 365
            ASK A+DRACPNGDPVSRRKAAA+R  Q+KKAA+ XXXXXXXX        KRKRL+VL  AT GMT VA SLAK+AA+KE EQ+S KRQ+            I +LK K  +GLG+EA  KQ L  LLDE+
Sbjct:  242 ASKPALDRACPNGDPVSRRKAAAFRAEQEKKAARAXXXXXXXXRASEEVENKRKRLQVLTAATEGMTGVATSLAKLAAIKEAEQESNKRQKXXXXXXXXXXXNIDALKTKLRLGLGDEATIKQTLLKLLDED 373
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BLAST of mRNA_P-littoralis_Contig715.10.1 vs. uniprot
Match: A0A6H5K8W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.430e-24
Identity = 79/143 (55.24%), Postives = 91/143 (63.64%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAKMAAMKEEEQQSAKRQR*----------------------IKSLKDKTAMGLGNEAVNKQKLEMLLDEE 365
            ASK A+DRACPNGDPVSRRKAAA+R  Q+KKAA+ XXXXXXXX        KRKRL+VL  AT GMT VA SLAK+AA+KE EQ+S KRQ                        I +LK K  +GLG+EA  KQ L  LLDE+
Sbjct:   44 ASKPALDRACPNGDPVSRRKAAAFRAEQEKKAARAXXXXXXXXRASEEVENKRKRLQVLTAATEGMTGVATSLAKLAAIKEAEQESNKRQTEXXXXXXXXXXXXXXXXXXXXXNIDALKTKLRLGLGDEATIKQTLLKLLDED 186
[Close]
BLAST of mRNA_P-littoralis_Contig715.10.1 vs. uniprot
Match: A0A6H5KS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS15_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.280e-20
Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAKMAAMKEEEQQSAKRQR*-----------IKSLKDKTAMGLGNEAVNK 335
            ASK A+DRACPNGDPVSRRKAAA+R  Q+KKAA+  XXXXXXX        KRKRL+VL   T GMT VA SLAK+AA+KE EQ+S KRQ+            I +LK K  +G G+ A  K
Sbjct:   87 ASKPALDRACPNGDPVSRRKAAAFRAEQEKKAARAEXXXXXXXRASEEVENKRKRLQVLTVDTEGMTGVATSLAKLAAIKEAEQESNKRQKXXXXXXXXXXXKIDALKTKLRLGFGDGATIK 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig715.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JD04_9PHAE1.190e-2756.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIH2_9PHAE4.230e-2559.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W9_9PHAE1.430e-2455.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS15_9PHAE1.280e-2056.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig715contigP-littoralis_Contig715:33874..34258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size385
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.5797174-UTR-P-littoralis_Contig715:33873..338901680791489.5797174-UTR-P-littoralis_Contig715:33873..33890Pylaiella littoralis U1_48UTRP-littoralis_Contig715 33874..33890 +
1680791489.6159317-UTR-P-littoralis_Contig715:34151..342581680791489.6159317-UTR-P-littoralis_Contig715:34151..34258Pylaiella littoralis U1_48UTRP-littoralis_Contig715 34152..34258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.6044612-CDS-P-littoralis_Contig715:33890..341511680791489.6044612-CDS-P-littoralis_Contig715:33890..34151Pylaiella littoralis U1_48CDSP-littoralis_Contig715 33891..34151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig715.10.1prot_P-littoralis_Contig715.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig715 33891..34151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig715.10.1

>prot_P-littoralis_Contig715.10.1 ID=prot_P-littoralis_Contig715.10.1|Name=mRNA_P-littoralis_Contig715.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MDRACPNGDPVSRRKAAAYREAQDKKAAKEEADKENAKRAAEEAENKRKR
LEVLKEATAGMTNVAASLAKMAAMKEEEQQSAKRQR*
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mRNA from alignment at P-littoralis_Contig715:33874..34258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig715.10.1 ID=mRNA_P-littoralis_Contig715.10.1|Name=mRNA_P-littoralis_Contig715.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=385bp|location=Sequence derived from alignment at P-littoralis_Contig715:33874..34258+ (Pylaiella littoralis U1_48)
TCGCAAGTAAGGCGGCCATGGATCGAGCCTGCCCGAACGGTGACCCCGTG
AGCCGTCGCAAAGCGGCGGCATACAGGGAGGCACAGGATAAGAAAGCAGC
CAAAGAGGAGGCTGACAAGGAGAACGCGAAGAGGGCGGCAGAGGAGGCCG
AGAACAAGAGGAAAAGGCTGGAAGTCCTCAAGGAAGCTACGGCGGGAATG
ACGAACGTCGCCGCGAGTCTCGCCAAGATGGCGGCCATGAAAGAAGAGGA
GCAACAGAGCGCCAAGCGCCAAAGGTAGATTAAGAGTCTGAAAGACAAGA
CTGCCATGGGTCTCGGAAACGAGGCCGTAAACAAACAGAAGCTCGAAATG
CTGCTCGACGAGGAAGAGTTTTAGATGTGCGAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig715:33874..34258+

>mRNA_P-littoralis_Contig715.10.1 ID=mRNA_P-littoralis_Contig715.10.1|Name=mRNA_P-littoralis_Contig715.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig715:33874..34258+ (Pylaiella littoralis U1_48)
ATGGATCGAGCCTGCCCGAACGGTGACCCCGTGAGCCGTCGCAAAGCGGC
GGCATACAGGGAGGCACAGGATAAGAAAGCAGCCAAAGAGGAGGCTGACA
AGGAGAACGCGAAGAGGGCGGCAGAGGAGGCCGAGAACAAGAGGAAAAGG
CTGGAAGTCCTCAAGGAAGCTACGGCGGGAATGACGAACGTCGCCGCGAG
TCTCGCCAAGATGGCGGCCATGAAAGAAGAGGAGCAACAGAGCGCCAAGC
GCCAAAGGTAG
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