mRNA_P-littoralis_Contig713.29.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig713.29.2
Unique NamemRNA_P-littoralis_Contig713.29.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig713.29.2 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.620e-44
Identity = 101/220 (45.91%), Postives = 133/220 (60.45%), Query Frame = 3 
Query:  105 KRAKPSDAED----VVSPDTLELCDHAAESEGDTGAGTAAEDHGDQTPHQTYDDEFGTEMAYLLESE---VLPEAPSAWAEELWEVAKHNPAGIRAWIGEKLGTIE--CGCVDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQKSRAQSGDNVNYVLARTVRSNLQYNAAIEIGARDGGNQCQRGACFKQAVDMFSGLKIEGVPRAVVLALLRH 737
            KRAK S+ ++    VVS    ++ D AAE +G   A  AA        + + DDEF  E+A LL  E    + + P + A  L + A  N  G+RA + E+  T    CGC  P P W KS P+ ++TCGRQQAH+++ + +  V+ RQK R   GDNV+YVLARTVR  LQY AA EIGA   GNQC+RG CF +A+ MF G  +EG+PR VVLALLR+
Sbjct:   10 KRAKTSEEDNDPWLVVSEGVTDVAD-AAEGQG---AAAAAASTPSLDGNGSQDDEFDEELATLLADEPPRAVKQTPLSKA--LLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_P-littoralis_Contig713.29.2 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.130e-26
Identity = 64/139 (46.04%), Postives = 83/139 (59.71%), Query Frame = 3 
Query:  249 DDEFGTEMAYLLESE---VLPEAPSAWAEELWEVAKHNPAGIRAWIGEKLGTIE--CGCVDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQKSRAQSGDNVNYVLARTVRSNLQYNAAIEIGARDGGNQCQRG 650
            D+E   E+A L+  E      ++P A A  L + A  NP G+R+ + E+  T    CGC  PL +WKK          RQQAH+++ + +  V+ RQK+R   GDNV YVLARTVRSNLQY AA EIGA   GNQC+RG
Sbjct:   25 DEELDDELATLVADEPPRAAKQSPLATA--LLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
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BLAST of mRNA_P-littoralis_Contig713.29.2 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.680e-17
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:  249 DDEFGTEMAYLLESE---VLPEAPSAWAEELWEVAKHNPAGIRAWIGEKLGTIE--CGCVDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQKSRAQSGDNVNYVLARTVRSNLQYNAAIEIGARDGG 632
            DDEF  E+A LL  E      + P A A     + + NP G+RA + E+  T    CGC  P P W KS P+ ++TCGRQQAH+++ + + E       R   GDNV+YVLARTVRS       +  GARD G
Sbjct:   57 DDEFDEELATLLADEPPRAANQTPLAKA-----LLQANPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQE-------RDSQGDNVSYVLARTVRSK----PTVLGGARDWG 173
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BLAST of mRNA_P-littoralis_Contig713.29.2 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.320e-11
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = 3 
Query:  105 KRAKPSDAED----VVSPDTLELCDHAAESEGDTGAGTAAEDHGDQTPHQTYDDEFGTEMAYLLESEVLPEAPSA-WAEELWEVAKHNPAGIRAWIGEKLGTIECGCV--DPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQKSR 533
            KRAK S+ ++    VVS    ++ D AAE +G   A  AA        + + DDEF  E+A LL  E    A     A+ L + A  NP G+RA + E+  T   GC+   P P W  S P+ ++TCGRQQAH+++ + +  V +  +SR
Sbjct:   10 KRAKTSEEDNDPWLVVSEGVADVAD-AAEGQG---AAAAAASTPSLDGNGSQDDEFDEELATLLADEPPRAAKQTPLAKALLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQTVGSLPRSR 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig713.29.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE6.620e-4445.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI5.130e-2646.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE1.680e-1742.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E2_9PHAE2.320e-1136.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig713contigP-littoralis_Contig713:66437..68226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size871
Hectar predicted targeting categoryother localisation
Exons2
Cds size663
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.7461746-UTR-P-littoralis_Contig713:66436..665671680791488.7461746-UTR-P-littoralis_Contig713:66436..66567Pylaiella littoralis U1_48UTRP-littoralis_Contig713 66437..66567 -
1680791488.7836318-UTR-P-littoralis_Contig713:68149..682261680791488.7836318-UTR-P-littoralis_Contig713:68149..68226Pylaiella littoralis U1_48UTRP-littoralis_Contig713 68150..68226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.756283-CDS-P-littoralis_Contig713:66567..668011680791488.756283-CDS-P-littoralis_Contig713:66567..66801Pylaiella littoralis U1_48CDSP-littoralis_Contig713 66568..66801 -
1680791488.770404-CDS-P-littoralis_Contig713:67720..681491680791488.770404-CDS-P-littoralis_Contig713:67720..68149Pylaiella littoralis U1_48CDSP-littoralis_Contig713 67721..68149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig713.29.2prot_P-littoralis_Contig713.29.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig713 66568..68149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig713.29.2

>prot_P-littoralis_Contig713.29.2 ID=prot_P-littoralis_Contig713.29.2|Name=mRNA_P-littoralis_Contig713.29.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MSHEEQRPSKRAKPSDAEDVVSPDTLELCDHAAESEGDTGAGTAAEDHGD
QTPHQTYDDEFGTEMAYLLESEVLPEAPSAWAEELWEVAKHNPAGIRAWI
GEKLGTIECGCVDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQK
SRAQSGDNVNYVLARTVRSNLQYNAAIEIGARDGGNQCQRGACFKQAVDM
FSGLKIEGVPRAVVLALLRH*
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mRNA from alignment at P-littoralis_Contig713:66437..68226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig713.29.2 ID=mRNA_P-littoralis_Contig713.29.2|Name=mRNA_P-littoralis_Contig713.29.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1790bp|location=Sequence derived from alignment at P-littoralis_Contig713:66437..68226- (Pylaiella littoralis U1_48)
CAAGATAAATACCCCGGGCAGCTCCTAGAGAGCACACACACAGCGGTAGT
GAACTTGACTTCAGTTGCTCCACCAACATGTCTCACGAGGAGCAGCGTCC
CTCCAAGCGCGCGAAGCCAAGTGATGCCGAGGATGTTGTATCCCCAGATA
CTTTGGAGCTCTGTGATCATGCCGCTGAGAGCGAAGGCGACACCGGGGCA
GGCACTGCTGCTGAAGACCATGGTGACCAAACTCCTCACCAAACTTACGA
TGACGAGTTTGGCACCGAGATGGCATACCTCTTGGAAAGCGAGGTACTGC
CTGAGGCGCCATCTGCCTGGGCTGAAGAGCTGTGGGAAGTAGCCAAGCAC
AACCCTGCTGGGATACGCGCCTGGATAGGAGAGAAGCTCGGTACGATCGA
GTGTGGATGCGTGGATCCTCTCCCAAAATGGAAAAAAAGTAGCCCCAACG
AGGTCAGCACATGCGGCAGGCAGCAGGCCCATCTCCTCTCCCAGCTGGAC
ATGGATGCAAGTGTGTACGTCTGTGAGTGTCTGTCCACGTGCAGACAACA
ACAGTGGGCTCTGGGATGATGGTAGATAAAGAACATGAGGCGCCCCCTGT
CCCGAAGCACTCAGAGAGCAAGTCGGCGCGGTCGGGAACTGTAGTCCGAC
ATAACACACAACGATGCCACTCTTCTGTTTTTGGTGTGTACTAGCGCAAA
ACCTACAGAAACACGGTTATCTCAAACCGGTATGATGTGCAGCAGTACCA
GGCATACAGCAGAACAAAGTAAATACTGCTGTACTCCAGTAAAATTGAAA
TCATACACAGCAGTAGACAGCAGTGCTTTTTACAGCAGTACTGGTCAAGC
CTTCGAGCATGCTTGGTACAAAGCAGTACTTCGAAGTACCTTTTTACAGC
AGTAATACCGGTCAAGCCTTGAACATGCTTGGCACAAATTATGCTACTCT
GTTGTTTTTTTAAATTACAAACACAGCAGTGATGTCTTGGTAAGAAAAAA
TAAAAAATAAAAAATGAAAACGTCAATGTGTTCGCCTCTCTCCAGACTAC
TTTTCTGATACTATCAGACAAATTGCATGCATACAAGTGTGTTGTCATCT
CATTAATTGGACGCCACTCTACTCTTCCGGGTAGGTAGACGCTCCAACCG
GGGTCACAACGGAGGAAGTCAACACAGGAGTGTTTTCTTTTATTTATTTT
TATTTCCTTTCTCCACTTCCCACTGCGGTACTTGCCTTCATTTTTTCTCG
CGATAAAGGGTACAGCCATCCTTTTCCCTCGTCGACACTTCGGATTTTGT
TTACTCACCAATTGATCATTTTCCACCCTCACGCATGTCATGAGAAGAAT
TCCGGATCGTTTTACTTTAGTAATAGTCCCACACGCCCTCATCCCGCCCT
CCCGCCCCCCTTGCACGTGCTACAGGAAGTGATGGCTAGGCAAAAAAGCA
GGGCACAGTCTGGCGACAACGTCAACTACGTTCTTGCGCGGACGGTGCGG
AGCAATCTGCAGTACAACGCGGCCATCGAGATCGGGGCGAGGGATGGTGG
GAATCAGTGCCAACGCGGCGCGTGCTTCAAACAGGCCGTTGATATGTTTT
CTGGCCTCAAAATCGAGGGCGTCCCTCGAGCGGTTGTGCTAGCGTTGCTG
AGGCACTAAAAAAAAAAGCTTTATTTTAGGCTTGCAAGATGGCTGTTTTT
TCTGTAAGTGAATATTGAGGCAAATGCGGCCTAAATGTTGGGCATGGTCT
TGTACACTTTGCGTGCTCGTTTCGCGTGCACCGGTTGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig713:66437..68226-

>mRNA_P-littoralis_Contig713.29.2 ID=mRNA_P-littoralis_Contig713.29.2|Name=mRNA_P-littoralis_Contig713.29.2|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig713:66437..68226- (Pylaiella littoralis U1_48)
ATGTCTCACGAGGAGCAGCGTCCCTCCAAGCGCGCGAAGCCAAGTGATGC
CGAGGATGTTGTATCCCCAGATACTTTGGAGCTCTGTGATCATGCCGCTG
AGAGCGAAGGCGACACCGGGGCAGGCACTGCTGCTGAAGACCATGGTGAC
CAAACTCCTCACCAAACTTACGATGACGAGTTTGGCACCGAGATGGCATA
CCTCTTGGAAAGCGAGGTACTGCCTGAGGCGCCATCTGCCTGGGCTGAAG
AGCTGTGGGAAGTAGCCAAGCACAACCCTGCTGGGATACGCGCCTGGATA
GGAGAGAAGCTCGGTACGATCGAGTGTGGATGCGTGGATCCTCTCCCAAA
ATGGAAAAAAAGTAGCCCCAACGAGGTCAGCACATGCGGCAGGCAGCAGG
CCCATCTCCTCTCCCAGCTGGACATGGATGAAGTGATGGCTAGGCAAAAA
AGCAGGGCACAGTCTGGCGACAACGTCAACTACGTTCTTGCGCGGACGGT
GCGGAGCAATCTGCAGTACAACGCGGCCATCGAGATCGGGGCGAGGGATG
GTGGGAATCAGTGCCAACGCGGCGCGTGCTTCAAACAGGCCGTTGATATG
TTTTCTGGCCTCAAAATCGAGGGCGTCCCTCGAGCGGTTGTGCTAGCGTT
GCTGAGGCACTAA
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