mRNA_P-littoralis_Contig712.21.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig712.21.7
Unique NamemRNA_P-littoralis_Contig712.21.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: D7FX59_ECTSI (SET translocation n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX59_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 3.500e-96
Identity = 206/289 (71.28%), Postives = 223/289 (77.16%), Query Frame = 1 
Query:   61 MSRPLLNEPPSKRHRAQDEGDEIADGP---EEDQEFRRLEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSVHKALFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGFRVTFNFRENPFFSNVELWREWEPTEGQAAYSAINWKDTDESKGLQSCLLWNLDPASEQEETPSFFSIFCEDVEDYELGEALRGDITDNPLDIYMR 918
            MSR LL+EPP+KR RAQ EGD  AD P   EEDQEF+RLEA+S VQDELNAL EEEAQ+VL VHKAFLKRKRPLY KRQEAIA++PDFWLKV        PYISD DQLALSYLE+V+VHKA   A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            D VGFRVTF FRENPFFSN ELWREWEP + +A++S +NWKDTDES+ LQSCLLWNLDPA   EETPSFFSIF +D+EDYELGEALRGDITDNPLDIYMR
Sbjct:    1 MSRALLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKV--------PYISDGDQLALSYLEAVAVHKATPTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGGKLDDD------------------DDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSVVNWKDTDESRDLQSCLLWNLDPAL-HEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMR 262
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: W7UBP8_9STRA (Protein set isoform 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBP8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.820e-24
Identity = 81/255 (31.76%), Postives = 118/255 (46.27%), Query Frame = 1 
Query:  166 LEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSVHKALFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGFRVTFNFRENPFFSNVELWREWEPTEGQAAYSA--INWKDTDESKGLQSCLLWNL---DPASEQEETPSFFSIFCEDVEDYELGEALRGDITDNPLDIYM 915
            ++AI+ VQ ELN+L   + Q + E+ K + + K+P+Y++RQEAI ++P+FW KVLLAHP    +ISD DQ AL +L +V V                                                                          +RV F F  N +F N  LW+E+     +A  SA  + WKDT ESKGLQ  L+ +L   DP  E  + PSFFSIF  +  D E+G+ L+ ++  +P+ IY+
Sbjct:   53 VKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPD--------------------------------------------YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQ-PSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYL 262
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: A0A4D9D956_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D956_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.730e-13
Identity = 64/214 (29.91%), Postives = 89/214 (41.59%), Query Frame = 1 
Query:  289 EAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSVHKALFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGFRVTFNFRENPFFSNVELWREWEPTEGQAAYSA--INWKDTDESKGLQSCLLWNL---DPASEQEETPSFFSIFCEDVEDYELGEALRGDITDNPLDIYM 915
            +AIA +P+FW KVLLAHP    +ISD DQ AL +L +V V                                                                          +RV F F  N +F N  LW+E+     +A  SA  + WKDT ES+GLQ  L+ +L   DP  E  + PSFFSIF  +  D E+G+ L+ ++  +P+ IY+
Sbjct:   54 KAIATVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPD--------------------------------------------YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESEGLQEILVPHLLAQDPVPENVQ-PSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYL 222
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: UPI001F5C9B1E (NAP1-related protein 1-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C9B1E)

HSP 1 Score: 77.0 bits (188), Expect = 2.000e-12
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   94 KRHRAQDEGDEIADGPEEDQEFRRLEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSV 408
            KR +  ++GDE  D    D     +E +  +QDE++ + EE + KVLEV + + + +RP+YA+R E I E+PDFWL   L+HP+    +++ DQ    +LES+ V
Sbjct:    9 KRPKIDEDGDERMD----DAVLLAIEQLQEIQDEIDKVNEEASDKVLEVEQKYNEVRRPVYARRNEIIREIPDFWLTAFLSHPILGELLTEDDQKIFKHLESIDV 109
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: C0PSX5_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=C0PSX5_PICSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.230e-11
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  166 LEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSV 408
            +E +   QDEL+   EE   KVLE+ + +++++RP+Y +R E I ++P+FWL   L+HP     +++ DQ A  YL+SV+V
Sbjct:   25 MERLQEAQDELDKANEEANDKVLEIEQTYMEKRRPIYQRRNEVIQKIPEFWLTAFLSHPHLSDLLTEDDQKAFKYLQSVNV 105
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: A0A498HCZ7_MALDO (Uncharacterized protein n=3 Tax=Maleae TaxID=721813 RepID=A0A498HCZ7_MALDO)

HSP 1 Score: 72.8 bits (177), Expect = 5.890e-11
Identity = 62/258 (24.03%), Postives = 101/258 (39.15%), Query Frame = 1 
Query:  166 LEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSVHKALFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGFRVTFNFRENPFFSNVELWREWEPTEGQAAY---SAINWKDTDESKGLQSCLLWNLDPASEQEETPSFFSIFCE------DVEDYELGEALRGDITDNPLDIY 912
            +E +  VQDEL+ + +EE  KVL++ + + + +RP+Y KR E I  +PDFWL   ++HP+    +S  DQ    YL+S+ V                                                                        +G+ VTFNF +NP+F + +L + +   +GQ      + + WK   E  GL + +    +         SFFS+F E      D    E+ E ++ D+  NPL  +
Sbjct:   31 VEKLQEVQDELDKVDDEENDKVLDIEQKYNEIRRPVYVKRNEIIKTIPDFWLTSFMSHPVLCDILSAEDQKIFKYLKSIDV----------------------------------------------------------------VDFKDDKTLGYSVTFNFNDNPYFEDTKLTKTFTYIDGQTTKITGTPVKWK---EGMGLANGVTDVKNGKKRPHVDESFFSLFNETEHKDIDAIHDEVVEIIKNDLWPNPLKYF 221
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: A0A0D6R8Z5_ARACU (Uncharacterized protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R8Z5_ARACU)

HSP 1 Score: 72.8 bits (177), Expect = 6.130e-11
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  166 LEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSV 408
            +E +  +QDEL  + EE ++KVLEV + + + +RP+YAKR E I  +PDFWL   L+HP     +++ DQ    YL+S+ V
Sbjct:   23 IEKLQEIQDELEKVNEEASEKVLEVEQKYNEIRRPVYAKRNEIIQTIPDFWLTAFLSHPALGDLLTEEDQQVFKYLQSLDV 103
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: A0A2K6TE66_SAIBB (Uncharacterized protein n=2 Tax=Saimiri boliviensis boliviensis TaxID=39432 RepID=A0A2K6TE66_SAIBB)

HSP 1 Score: 71.2 bits (173), Expect = 2.260e-10
Identity = 70/271 (25.83%), Postives = 106/271 (39.11%), Query Frame = 1 
Query:  136 GPEEDQEFRRLEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSVHKALFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGFRVTFNFRENPFFSNVELWREWEPTEG---QAAYSAINWKDTDESKGLQSCLLWNLDPAS---EQEETPSFFSIFCE--DVEDYELGEALRGDITDNPLDIYMRVG 924
            G +E QE   +E I  VQ+E++ L E+ ++++L+V + F K ++P   KR E IA++P+FW+   + HP       + D+ AL YL  V V +                                                                       G+R+ F F ENP+F N  L +E+   E     +  + I WK     K L  C     + AS   + EE  S F+ F +  D    ELGE ++ DI  NPL  Y+  G
Sbjct:   47 GEKEQQEA--IEHIDEVQNEIDRLNEQASEEILKVEQKFNKLRQPFLQKRSELIAKIPNFWVTTFVNHPRVSALRGEKDKEALHYLTRVKVTE-----------------------------------------------------------------FEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDTSSKSTEIKWKS---GKDLTKCSSQTQNKASRKRQHEEPESSFTWFADHSDAGADELGEVVKDDIWQNPLQYYLDEG 247
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: A0A2J8AD51_9CHLO (Protein SET n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AD51_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 4.340e-10
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:   76 LNEPPSKRHRAQD-EGDEIADGPEEDQEFRRLEAISAVQDE-----LNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSV 408
            + EP  KR RA+D +GD   D P E       +A   V+ E     L+ + +E + +VL V + + K++RP+Y +R E I ++P FW +VLLAHP+   ++SD D   L+YL  + V
Sbjct:    1 MAEPSPKRQRAEDGDGDVALDEPLEGDVLPGPDAHLVVELEDCQKALDKVNDEASDRVLAVEQEYNKKRRPIYTQRAEIINKVPQFWQRVLLAHPILADHLSDDDNAVLAYLTELDV 117
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BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Match: I1IYH0_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IYH0_BRADI)

HSP 1 Score: 69.7 bits (169), Expect = 6.290e-10
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:  121 DEIADGPEEDQE-FRRLEAISAVQDELNALGEEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYISDSDQLALSYLESVSV 408
            DE  +G + D++ F  +E +  +QDE+  + EE + KVLEV + + +  RP+YA+R E I ++PDFWL   L+HP     +++ DQ    +LES+ V
Sbjct:   14 DEEEEGDDIDKDLFLSVEKLHDIQDEIERVNEEASDKVLEVDQKYNEILRPVYARRNELIRKIPDFWLTAFLSHPKLGELLTEDDQKIFKHLESIDV 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig712.21.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FX59_ECTSI3.500e-9671.28SET translocation n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
W7UBP8_9STRA2.820e-2431.76Protein set isoform 2 n=2 Tax=Nannochloropsis gadi... [more]
A0A4D9D956_9STRA3.730e-1329.91Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI001F5C9B1E2.000e-1238.10NAP1-related protein 1-like n=2 Tax=Lolium rigidum... [more]
C0PSX5_PICSI4.230e-1139.51Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A498HCZ7_MALDO5.890e-1124.03Uncharacterized protein n=3 Tax=Maleae TaxID=72181... [more]
A0A0D6R8Z5_ARACU6.130e-1141.98Uncharacterized protein n=2 Tax=Araucariaceae TaxI... [more]
A0A2K6TE66_SAIBB2.260e-1025.83Uncharacterized protein n=2 Tax=Saimiri boliviensi... [more]
A0A2J8AD51_9CHLO4.340e-1036.75Protein SET n=1 Tax=Tetrabaena socialis TaxID=4779... [more]
I1IYH0_BRADI6.290e-1038.14Uncharacterized protein n=1 Tax=Brachypodium dista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig712contigP-littoralis_Contig712:96439..103596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX59
Preferred nameHSF5
PFAMsHSF_DNA-bind,NAP
Model size1138
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00074
KEGG koko:K01937,ko:K05621,ko:K06071,ko:K11284,ko:K11285,ko:K11286,ko:K11287,ko:K11288,ko:K11289,ko:K11290,ko:K15413
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,ko04151,ko05132,ko05168,ko05203,map00240,map01100,map04151,map05132,map05168,map05203
KEGG ModuleM00052
Hectar predicted targeting categoryother localisation
GOsGO:0000182,GO:0000228,GO:0000726,GO:0000775,GO:0000785,GO:0000790,GO:0000981,GO:0001558,GO:0001672,GO:0001932,GO:0003158,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0004857,GO:0004864,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0005811,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006302,GO:0006303,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006986,GO:0006996,GO:0007154,GO:0007165,GO:0008047,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010698,GO:0010847,GO:0010921,GO:0010923,GO:0010941,GO:0012505,GO:0016043,GO:0019208,GO:0019212,GO:0019219,GO:0019220,GO:0019222,GO:0019888,GO:0019899,GO:0022411,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030234,GO:0030308,GO:0030855,GO:0030968,GO:0031056,GO:0031057,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031333,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032502,GO:0032515,GO:0032984,GO:0032986,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034506,GO:0034620,GO:0034622,GO:0034641,GO:0034645,GO:0034728,GO:0034976,GO:0035065,GO:0035066,GO:0035067,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0035966,GO:0035967,GO:0036498,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042393,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043487,GO:0043488,GO:0043523,GO:0043524,GO:0043549,GO:0043565,GO:0043666,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045446,GO:0045786,GO:0045798,GO:0045859,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046662,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051336,GO:0051338,GO:0051346,GO:0051716,GO:0051726,GO:0051896,GO:0051897,GO:0060255,GO:0060429,GO:0060548,GO:0061013,GO:0061638,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071214,GO:0071310,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090230,GO:0090304,GO:0097159,GO:0098687,GO:0098772,GO:0104004,GO:0140110,GO:1900049,GO:1900050,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1901576,GO:1901983,GO:1901984,GO:1901985,GO:1902275,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903097,GO:1903098,GO:1903311,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1904834,GO:1905268,GO:1905269,GO:1905783,GO:1990837,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000757,GO:2000758,GO:2001141,GO:2001251,GO:2001252
Exons8
Evalue5.05e-97
EggNOG OGsKOG1508@1|root,KOG1508@2759|Eukaryota
EC2.3.2.13,2.7.11.13,6.3.4.2
Descriptionnucleosome assembly
Cds size1065
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig712.21.7prot_P-littoralis_Contig712.21.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig712 96452..103536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791487.3055627-UTR-P-littoralis_Contig712:96438..964511680791487.3055627-UTR-P-littoralis_Contig712:96438..96451Pylaiella littoralis U1_48UTRP-littoralis_Contig712 96439..96451 -
1680791487.4209182-UTR-P-littoralis_Contig712:103536..1035961680791487.4209182-UTR-P-littoralis_Contig712:103536..103596Pylaiella littoralis U1_48UTRP-littoralis_Contig712 103537..103596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791487.3241663-CDS-P-littoralis_Contig712:96451..965221680791487.3241663-CDS-P-littoralis_Contig712:96451..96522Pylaiella littoralis U1_48CDSP-littoralis_Contig712 96452..96522 -
1680791487.3392642-CDS-P-littoralis_Contig712:96903..970391680791487.3392642-CDS-P-littoralis_Contig712:96903..97039Pylaiella littoralis U1_48CDSP-littoralis_Contig712 96904..97039 -
1680791487.355107-CDS-P-littoralis_Contig712:97305..973921680791487.355107-CDS-P-littoralis_Contig712:97305..97392Pylaiella littoralis U1_48CDSP-littoralis_Contig712 97306..97392 -
1680791487.364592-CDS-P-littoralis_Contig712:97728..978451680791487.364592-CDS-P-littoralis_Contig712:97728..97845Pylaiella littoralis U1_48CDSP-littoralis_Contig712 97729..97845 -
1680791487.377988-CDS-P-littoralis_Contig712:98569..986381680791487.377988-CDS-P-littoralis_Contig712:98569..98638Pylaiella littoralis U1_48CDSP-littoralis_Contig712 98570..98638 -
1680791487.3875062-CDS-P-littoralis_Contig712:98970..992881680791487.3875062-CDS-P-littoralis_Contig712:98970..99288Pylaiella littoralis U1_48CDSP-littoralis_Contig712 98971..99288 -
1680791487.397347-CDS-P-littoralis_Contig712:99855..999541680791487.397347-CDS-P-littoralis_Contig712:99855..99954Pylaiella littoralis U1_48CDSP-littoralis_Contig712 99856..99954 -
1680791487.4104886-CDS-P-littoralis_Contig712:103368..1035361680791487.4104886-CDS-P-littoralis_Contig712:103368..103536Pylaiella littoralis U1_48CDSP-littoralis_Contig712 103369..103536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig712.21.7

>prot_P-littoralis_Contig712.21.7 ID=prot_P-littoralis_Contig712.21.7|Name=mRNA_P-littoralis_Contig712.21.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=355bp
MSRPLLNEPPSKRHRAQDEGDEIADGPEEDQEFRRLEAISAVQDELNALG
EEEAQKVLEVHKAFLKRKRPLYAKRQEAIAELPDFWLKVLLAHPLTQPYI
SDSDQLALSYLESVSVHKALFAAAAAAASAAGGGATAAAVASDEGLKQSS
TAAGVSQEASPSKNVATGGGGEERAGGGGEDQLDDDDGVGFRVTFNFREN
PFFSNVELWREWEPTEGQAAYSAINWKDTDESKGLQSCLLWNLDPASEQE
ETPSFFSIFCEDVEDYELGEALRGDITDNPLDIYMRVGVCVRLRVPPAPA
VAAMSRSRRLRVPVRGPYITPGKTRPSALSCARLRRGGRRRRRRRRGGGR
VRRR*
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mRNA from alignment at P-littoralis_Contig712:96439..103596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig712.21.7 ID=mRNA_P-littoralis_Contig712.21.7|Name=mRNA_P-littoralis_Contig712.21.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=7158bp|location=Sequence derived from alignment at P-littoralis_Contig712:96439..103596- (Pylaiella littoralis U1_48)
TAGGCAGAGATAGAAGAGCAGGATAGCGCTCAAAGATTATTTGGGCAGCA
GAGATATACCATGTCTCGACCGCTACTGAACGAGCCTCCCTCCAAGCGGC
ATCGTGCCCAAGACGAGGGCGATGAAATCGCTGATGGTCCGGAAGAAGAC
CAGGAGTTTCGGCGATTAGAAGCGATTTCGGCTGTGCAGGACGAGCTAAA
CGCACTGGGCGAAGAGGAAGCACAAAAGGTACAACAGCAGTACAGGTATG
AGGCAGACGTAGGATACTGCTCCTGATCGCCGTGGTAAGAAAAGGCGCGC
GGGTCGGACGTGACCAGTGGAAGTTTCGGTCGAAACATGACATCTGTGCT
GCACTGCTGTTGTGTTGCACAGCACCACAGCGATGTTATGTCCAGCCGTC
ATGTTCAAGATCAGGGTGTGCGCAGGAGACCGCACGTGACACTTGAATTT
GGATGCTTGAATTTGGATGGGGTGCTCACCGCCGTGTAAACCACGCCGGG
GTGTGCACAAGGCAGGAAACGGCGCGGATATGTAAAGTCTTGGACGTGGG
GCAGTCGAGTACGAGGGAAGCGAGATCCGGAGCAGTCTGCCAACTACCAA
AGACAAATTTTCTTCTTAGAATCTAAGATATGATATCAAACGTAAGATAC
ATGCACATGATATATTGTCGTGAGGGCTGTGAGTGTGTGTGTTGTCACCC
CTTTAACCCTTTGAACCCCCCAATCCCAATTGGGGACAATTTGGGGACAC
CTATTTTTTTTTTGTGAGTTGGGTTTTGAAGGCGCCTATCTACAGGTATT
TTGGGTATGGTTCCGTGAGCTCGATGGAATGTGTGTGGATCGACCAATCG
TTGGCTGCCTCGGTGCCACATTTAGTTTTTTATTATTATTATGGGAGAGC
AAGCGCGCCCGACAGCATAGTAGACACAAGGACGATCATCTTGTATCACA
CTTACTTCATGCCGGCACCTTCTTGCTGCATTGCACACAACTGCACACAA
CATGCACACATACACATAAGACATGATACATAGACTATGTTATACCTTGT
ACTACTGTACCGCTCCTATGAAACGCTGATGATGCTGACGTACTACTGCA
CTCACGTACATACCCTGATTTCTGCAACTTTTATTGTACTCTGCTTCTGC
TGCTGCTGCTGTGTGCATGCTGCAGCAAGCAGCTAGCTGATGATGTGTCG
TGCGGTGGGTTGGTGAGGCACACGCCACGCACACGGGGGCCGACACTACA
GACACATCGCGCCACGCACGTTTGAAAGCTCATAAACTTACCCGGCGATC
TCGTACGAGTATCATCACATGGGTACCATTACATGCCGACACCCTTGCGT
TGATCACATGCAACATGATGATGATATGTTTGACTTCAGAGGCTATAGTG
CAGCTGCTGCTTGCTGCTGCTGCTGATGAGATGCTGTAGACCCTGTGTGG
TTGTCGAGCGGGGTACTACCCTGATCTGCCATGCTAAGTGGCGGTATTGC
TGCGTGCTACCTTGCATACAGCAGTATCCCTTTGAAGCAACATCCTGTAA
AACTAGTCTAAACAAACAACTTTTGTGTAGTTGACCCCCCCAAAAAAGTT
TGGTGTAGCTTTAGACTGAAATCTGTCCCTGTTTTTTTCAGGGCAAATTG
GGGACAGGTTTCTGTGTATAATCAAGTCACACCCCTTTTTTCACCCGGAG
AGAGCAGGGAGTCAGCGAGATATCAGTACTTTTTTTTTTTTGAGACTGTC
GACCATTCGCCAATCATCGGTGCACCGAAATCAGATAATTTTTGGCTCCA
TGATAATTTTTTCAGATCCCTGGGGGGTCAAAGGGTTAATTGGACGCCAC
TCTACACCTTTCGGGTAGGTAGACGCTTCCAACCGGGGTCACACAGGGGG
AAGTCAACACAGGAGTTTTTTTTATTTTTTTTGCTCCACTTCCCTCTGCG
GTGCTTGCCTTTTGGTTGAGCTTTTATCGCGAGAAAGGGGACATCAATCC
CTTTCCCTCGTCGATGGTACGATCGAATTTCGTTTACTCTCGAATTGATC
GCTTTCCACTTTCACGCGCATTGTGAGAAGAAAACCCAGATCGTGTTACT
GCACTGGGATTCGAACTCACGCGTGAATGTCAGAAGGTTGCGTGGATGAC
CAACTGAACCACCGGGGCGGAAGGGGTACGTAGAAAAAAAATACTAGACT
CGCACCTGACCTGTGCCGCCCAGCCCTGAAGCCTACAACCTGCCGTACGT
GGCACGTGGTCCATTCGTCCGCCACCACGACGAGAGGGGGTTCAAACTGA
GGAAAAAGTGACGAACATTTAGAGCACCACAGTGACGCCCTCGCTGCTGC
TACTGCTGCTGCTGCTGCTCCCTCTCTGAACAGCGTACAGCAGTACTTGT
ATACTTCGAAGTACTTCGTACTATTTTCTATCGAATCTGTTGTTTTTTTT
CTGCATTTTGTTTGGTACTTTGGCCACCACAGATAGTACCCCAACGGTAC
CCTATCTGATTTGACTGTGGGTGATCATGACCATTTATTTTCTTTTTATA
TTCCTCCTATCGTAGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGA
CTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACAACAAGCTGCTGTA
TGCATATCATACTACGCACAAGAAGAAGCAGCCCAAAGCCAAGCTACGGG
GTGGCCGGAGTGGAAAACCTGTAGGGCGGAATGGTGGTGTAGCTGCTGCC
AAAGATGTGGGGCAGAAACAACTGGGTACGGTGGTGCCAGTAGCAGGAGG
CATGAGTGCGACTGAGGAGAGCAAGCGTGAACAGGCAGACCTCGTGGCAA
GACATGTTTGCGATTGATTGCATGCCTTTTATTTTATTTTTTATCACCCC
CCCACCCCCCCCCCCACCGACTTCCGGTACTTCCGGTCTTCCCTCTGCAC
TCTCCATGTATGTATTTTATTCCTCTTTGTCTCTTTTTTTTTTCGTTTCC
CTTTTCGTTCCCCTGCTTCCTCTTTGTTTGGCGGCCTGTTTGTTGTGTTT
GTGTACGAGTGCACTCCCTCAGTCCTTGTGCCCTCCCTGTAGCTTCTTCT
TTTTTATTTTTTTGTCTTTCGTCTATTGATCATATAGTTACCGGACCATT
GCCCTGGTTTGCGTTTGCCTTGGTCTGTCATGGCTCTGGGCCCTGGTTCG
ATGCACGAAGTTCTTCGAAGTATATGGTTATGGTTGAGGTTTGTCTTGGT
TATTTTTTGTTTGTCGGACTGTTTCCAATTTTTGTTTTTTCTTTCGAACC
TGTTATTTTTTTTCTGTATTTTGTTTGATACTTTGGCCACCACAGATGGT
ACCCCAACGGCACCCTATTTGATTTGACTGTGGGTGATCATAGTCCATAT
ATTTTATTTTTCTATTTTTTCCTCCTAGCACGATAAGTGCCTGGTTTGTG
ACCACCGGCGAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACA
ACAACAACCAACAACTACGGTAATTTCTGGACAATTCGTGCTCATTTCTT
TTTTCTGCTTTCACGCGTGCTCACCGCTCTCTTTGCACGGTGTTGGCGAC
ATGTGTGTGTGTGGGCGTGCGTTCTCTGGTGGGAACCGACAGGTTTTGGA
GGTCCATAAGGCGTTTCTCAAACGCAAACGACCGCTCTACGCAAAACGAC
AGGAGGCCATCGCAGAATTGCCAGACTTCTGGCTCAAGGTGGTGAGTGAC
CCGTGAGGCGAACTATGATATTATATGCTACTTCGCTTCTCCCAGCGGCT
TTATCCTGCACGCGTGCGGTATCCTGTCATGAGGGTGCCGTATCCCACCA
TATCGGTGAAACCACTCTGTGTTGCTGTTAACATCAGCTCGGCTCGTAAA
ATGTAGACCGTTGTTACAATAACCAGCGCAAGACAACGCTCCTGAACGGA
AAAAAAAACCAGCTTAAATATCCGATGGACCGAATGTGGGACAAAGGAAT
GTACGACATCGCTAGAAACACGGGCTGCGTGACGCTTTTTGACCGGCCGT
CAATTCGGATGCATCGACGATACACACGGGTATGTGGACACTTTTGGTAG
CCCTGTTGGTGGGTGGGTGGGTGGGTGGCAGAACGCGATGCAGAAAGAGA
CGATATCGCAGTCTTGCCGCGAAACTCTCTGGTCAAGTTTTGCTCACGGT
GAGCCTCCCCTTCACTTCCCATCTTTGTTTGACTCTCTTCTTCCCTGCCC
CTCCTCGTTCTGCCCCACCCGCCTCCCCTCTTCTTCTTTTGATTGTGCCT
CGTTCAAGCTCTTGGCGCACCCGTTGACCCAGCCGTACATATCGGACAGC
GATCAGCTCGCGCTGTCGTACCTGGAGTCGGTTTCTGTCCACAAAGCTTT
ATTCGCCGCAGCAGCAGCAGCAGCATCAGCAGCAGGAGGAGGAGCAACGG
CAGCAGCAGTAGCAAGTGACGAGGGGCTGAAGCAGTCAAGTACTGCAGCA
GGCGTATCACAGGAGGCATCGCCGTCGAAAAATGTCGCAACGGGTGGAGG
AGGAGAGGAGAGGGCAGGCGGGGGTGGAGAGGACCAACTGGATGACGATG
ACGGCGTTGGCTTCCGTGTGACCTTTGTGAGTCTATGTAGACTGCGCAGG
CGATGGGTGGATGCATCGTGCTCGACATTTTTACTGGCACTGGCGTATGC
TGTTTACCTCCATCCGTTATCTTCCGTTCACTGCATATTTTTCTCTCCAA
CCATCATTCATGCGGGTGATGCGTGTCACTCCTGGTAACTCATCCCCTAA
TTACCCCGCCCCCCCCATCCTTCACTCGAGAAATACGTTGTGATGTTATT
TTCCGTCATGGCAACCCACAACCCTGTCTAGCTGAGCCATTCGTGCCTCC
AAATTGCCGCCCCTCTCCCCCTCCCCTTACCTACATCCTACGTCCCACAC
GCCTCCAGAATTTTCGGGAAAACCCCTTTTTTTCTAACGTGGAGCTTTGG
CGAGAGTGGGAACCTACCGAAGGCCAGGTGAGTTCCGCGCTGCATACGTA
AGTCCCACACGTCTCCGCAACTTTCGGGAAAACCCTTTTTCTTAACATGG
AACTTTGGCGAGAGTGGGAATCTTCCGAGGGGCAGGTGAGTCCCGCGCTG
CAATCGCAGCCTTGCCCCGCTCGGGGCATTTGTGCTGGCACATGGCGCCT
TACCCGCCCTACCAATAGAAGCAGTGCCATGCTTTCTCGCCTGCCGGAAC
GTTATACACGGCGGAAAGTGCTCGCTCCGCTTCAATCCCCACGGATGTCC
TTTTTTACGTGATAAAATGCGTATGAACTTCGTATGGTTTCATGTTCAAA
TGTTGGTGTTTTCCTGTCATGCACGTTGGAGAGACGATTTGTGCGCACTG
CGACGTCTGTTGCATACACATGTTGACGTGAACGGCTGCCGAGAACACGT
GTGCCTGCTTCGGAGTATGATAGGTCGTATAAGGACCAGCTTTGGGCGGT
CCAAACTACAGCAGTACCCGGGCGTTCGGTTTGTGAGCCGCGTTCGAGCA
CGAGCTCACCCCCTTTCAGTAGTCTCTTGCGCATCTGCGATGCTGCCCGG
GCAATGGTGAACAAGAGGAGGGTCTCTCTTTGTTATTTCGTACGTTCCCT
GCATGTGAACGTACGTTCATGATATTATCTGTTCCATGTGCCACTCTCGC
CCCCTCCGCATCGTCTGGAAACCCCTCCGCGTCGTCTGGAAACCCTCGCA
GGCGGCGTATTCAGCGATCAACTGGAAGGACACGGACGAGTCCAAGGGGC
TGCAGTCGTGCCTCCTCTGGAACCTGGACCCAGCCTCGGAGCAGGAGGAG
ACGCCCTCCTTCTTTTCGGTGATCGCGAAACCGTCGGCTCGATCGAGTTC
GGAGGCTCTCTCTTATCAGATAAATCTGTGCATAACTCATGTGTGAATGA
ATACAGCAGTTTCAGAGCGTACCGTGCGTGCTGACTTTGTGTGACGGCAA
CTACCGGTCGCCGATTGGTTGCCGCACACACGAAAGTATCTGTGTATCAT
ATGCATCTATTCATCGCCTCACACGAAGTAATAAATTGCCTTGGCGGTGT
GTATGTGCTGACCCCACCCAATCCATGGGCGTTTGCCGTGGGTGTATTTT
GTTATTGTTTGCGTATATTCCTTTTTTTTTTGTTCTTTTGTTCATTCCGC
GCAGATATTTTGCGAAGACGTGGAGGACTACGAACTCGGAGAAGCGTTGA
GAGGGGACATCACGGATAATCCCCTTGACATCTACATGAGGGTAATTTTG
ACACGCTGTAGATTCTTCATACACGTGATGTCGGGGCTCTTGTCCAAGCA
AGACGATGTTTGCCCAGGGGAGCTCAGACTGCTGGTGCTGCTGCCCGCCG
CTATGTTGAATCGAGAGGGGGGGGCAGAGAGACGGGCTCGCGCTCGTTTC
GAGTGGCCCGCTGTGTGCGCTCTTGAACATTACCTTGGGATCATAATGCT
TCCTTGTTGACCTAGAGTTTTTTTTCCGCGTCAACACGGCGGTGTGATAC
GAAGCAGGTAGGTGTGTGCGTCAGGCTTCGGGTGCCCCCCGCCCCCGCGG
TCGCAGCAATGTCTCGCTCGCGTCGTCTGCGTGTACCTGTCCGCGGGCCG
TACATAACACCCGGCAAGACACGCCCTTCTGCTCTGTCATGTGGTAAGAA
ACGGAGGCAGGATCAATTTATTTCTCACCTCACGAAAGTCGTAAATCGTG
GCATCATGTGAAAAGAGGGAATCAGTCCTCGACAGACGTTGTGGGAATGT
GCTCCTCGTGGAGAGACCTCCTCGACAATCATGTACTCCGAAGTACAAAA
AGAGGAAGCGATACAGCAATAGTATTGTCCGATTGGAGACAAGCTTTCTC
CGCGAAGAAACGCAGGCAGCCTCGGCCAAAACGAGCATTTTTATTAACAT
ACATTGGTATCCGTTACCGCTGTTTACCCCCACCCACACCCCGAGTATCC
CCCGCTCCCTTGAATCAATTAATCTTCTTCGCATGGCATGGCGTGATATG
ATACGACGAACAACTCCATCTCAGCACGACTTCGACGCGGAGGCCGAAGG
AGAAGGAGGAGAAGAAGGGGGGGAGGGAGAGTACGACGACGATGATGAGG
CAGCGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig712:96439..103596-

>mRNA_P-littoralis_Contig712.21.7 ID=mRNA_P-littoralis_Contig712.21.7|Name=mRNA_P-littoralis_Contig712.21.7|organism=Pylaiella littoralis U1_48|type=CDS|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig712:96439..103596- (Pylaiella littoralis U1_48)
ATGTCTCGACCGCTACTGAACGAGCCTCCCTCCAAGCGGCATCGTGCCCA
AGACGAGGGCGATGAAATCGCTGATGGTCCGGAAGAAGACCAGGAGTTTC
GGCGATTAGAAGCGATTTCGGCTGTGCAGGACGAGCTAAACGCACTGGGC
GAAGAGGAAGCACAAAAGGTTTTGGAGGTCCATAAGGCGTTTCTCAAACG
CAAACGACCGCTCTACGCAAAACGACAGGAGGCCATCGCAGAATTGCCAG
ACTTCTGGCTCAAGGTGCTCTTGGCGCACCCGTTGACCCAGCCGTACATA
TCGGACAGCGATCAGCTCGCGCTGTCGTACCTGGAGTCGGTTTCTGTCCA
CAAAGCTTTATTCGCCGCAGCAGCAGCAGCAGCATCAGCAGCAGGAGGAG
GAGCAACGGCAGCAGCAGTAGCAAGTGACGAGGGGCTGAAGCAGTCAAGT
ACTGCAGCAGGCGTATCACAGGAGGCATCGCCGTCGAAAAATGTCGCAAC
GGGTGGAGGAGGAGAGGAGAGGGCAGGCGGGGGTGGAGAGGACCAACTGG
ATGACGATGACGGCGTTGGCTTCCGTGTGACCTTTAATTTTCGGGAAAAC
CCCTTTTTTTCTAACGTGGAGCTTTGGCGAGAGTGGGAACCTACCGAAGG
CCAGGCGGCGTATTCAGCGATCAACTGGAAGGACACGGACGAGTCCAAGG
GGCTGCAGTCGTGCCTCCTCTGGAACCTGGACCCAGCCTCGGAGCAGGAG
GAGACGCCCTCCTTCTTTTCGATATTTTGCGAAGACGTGGAGGACTACGA
ACTCGGAGAAGCGTTGAGAGGGGACATCACGGATAATCCCCTTGACATCT
ACATGAGGGTAGGTGTGTGCGTCAGGCTTCGGGTGCCCCCCGCCCCCGCG
GTCGCAGCAATGTCTCGCTCGCGTCGTCTGCGTGTACCTGTCCGCGGGCC
GTACATAACACCCGGCAAGACACGCCCTTCTGCTCTGTCATGTGCACGAC
TTCGACGCGGAGGCCGAAGGAGAAGGAGGAGAAGAAGGGGGGGAGGGAGA
GTACGACGACGATGA
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