mRNA_P-littoralis_Contig71.162.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.162.2
Unique NamemRNA_P-littoralis_Contig71.162.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig71.162.2 vs. uniprot
Match: D8LH89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.370e-50
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    4 KFIAVLLALYAMCASAFIAPSAVKSGSFVAPAVRATSMVAPKTTMNMGLEQIVEVLPVVPAEAHNTALEMANNPLLLSLRADSFGGLIGPIAGCLAVATFIVIMAPPRVD 333
            K  AVL ALY  CASAFIAPSAVKSGSF  PAVRATSMVAPK  M MGLEQI +VLP+VP+EAHN   EMANNPLLLS+ ADSFGGLIGPI GCLAVA FIV+MAPPRVD
Sbjct:    4 KLFAVLFALYCACASAFIAPSAVKSGSFATPAVRATSMVAPK--MTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.162.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH89_ECTSI3.370e-5080.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:621966..627501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size336
Hectar predicted targeting categorychloroplast
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001000.1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791484.7750401-CDS-P-littoralis_Contig71:621965..6222311680791484.7750401-CDS-P-littoralis_Contig71:621965..622231Pylaiella littoralis U1_48CDSP-littoralis_Contig71 621966..622231 -
1680791484.788562-CDS-P-littoralis_Contig71:627431..6275011680791484.788562-CDS-P-littoralis_Contig71:627431..627501Pylaiella littoralis U1_48CDSP-littoralis_Contig71 627432..627501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.162.2prot_P-littoralis_Contig71.162.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 621966..627501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.162.2

>prot_P-littoralis_Contig71.162.2 ID=prot_P-littoralis_Contig71.162.2|Name=mRNA_P-littoralis_Contig71.162.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MKFIAVLLALYAMCASAFIAPSAVKSGSFVAPAVRATSMVAPKTTMNMGL
EQIVEVLPVVPAEAHNTALEMANNPLLLSLRADSFGGLIGPIAGCLAVAT
FIVIMAPPRVD*
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mRNA from alignment at P-littoralis_Contig71:621966..627501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.162.2 ID=mRNA_P-littoralis_Contig71.162.2|Name=mRNA_P-littoralis_Contig71.162.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5536bp|location=Sequence derived from alignment at P-littoralis_Contig71:621966..627501- (Pylaiella littoralis U1_48)
ATGAAGTTCATCGCCGTACTCCTCGCCCTCTACGCCATGTGCGCTAGCGC
CTTCATCGCACCCTCGGCCGGTGAGTTTTGGTGAACAAAATTGCAAAATG
AGGTCTGTTTCCTCGCACGCAGGCGTCACTAAACAGCGCTCTGCTGTCCG
GTTCATGCATAAGCTGCGCGGCATGAGACCATCGGTGGCACCATCCTTCA
GCCGGATAAGCTGGGGATTTGCCAGAGCTCACGCGAGGGCTTTGGTTTAG
CTTGGTGAAGGCCTTGTGCATCGCGCGGCACTTCGTTGTGTGAGAGCACT
GAAGCAGGCTACGGCTTTCATGTGGCCTCTCTATTTTCGAGCCTTGTAGG
AGGGGTTGCATGAAGCTGTTGGTGCCCCGTGCTCCTGAGAGCCTCCAAGT
AGTACCGCAACTGCCCCGTTGTCAACGTAATATCGGATGTGTTCTAGCTC
GTGTTCGCTCCTCCGGTGTGTTTCGATCGAAGTGCAGCACCTTCTCTAGC
GTTTGCTCCAGGTTGGTCGACCACCTCTTTGAACAAGTCATTTCATCAGC
ACACACACGTACATACATCCAGGCTCCAGATTTGATCTAACATACTCGGA
GTATCACATAATGAAATAATGATAAAACGTCCTGTATCAATATGAATGTA
TAACATGGATAACAGCAGTTGCCGTCAAACGGCGGTTGGCCGTGCACGGC
GGTGCAGTCGTTCCGCTGAAGGGTGCTATGATAGTCATCCAGTGATATCG
ATCATGCAGCATGCGATGAAAATTCTAGGCTCATCCCCATCGCCGTGCCA
GCCGATGTAGACTACCGCTTACATTCAGCATGCATGACACACACAGCAGT
CATGGTTTGTTGTTGATCCTCACGTTAGCTCATCGTCAAAATCTAGCCCG
TGGTCACAAAAAGTGCTGAGCCCTAGGAAGATCCAAAAAACAGAAAGAAA
CTACAAGGGAATACCGGTACCCAAGAAAAGACCGTAGAAGATACACCTTC
CTACGCGGTGTGCATCACTGAACTACAGCAGTCACAGCAGTACCAGCATC
AAACTACTTCCAGCGTCGTTCATTTGACTACAACATCGTGTTCAGTCTCC
TCCCGCCCCACTTACAACTAATAACCTGCTGTACAAGCAGCCAGTAGGTA
GCTGCAAGACTACAGCAGTTAGTTGCTGTCTGGAGTGCTGCCTGCAACGT
TCAAGTAGCCCCGGCAATCGGAGAAGACAGAAAAAGAAAAAACACAAAAA
ACACAAACGTATCATCAGATGTGTAAACCTGCTACACAAAATACTTTTAT
ATTAGAGGAATGGCCAAAAACGGGTATACCCGGTGGTTTTGTGGCCATTA
TCGGGTACCCCTCTTTTTCGCCTGTAGAAATGGTCTCAGGGAGGAATCCC
ATTGGCCAAACCGCGCCGCCACCCGGTCTTGGCCAGATTTCTGCCAGGTT
TACCCGGTTTTGGCTACTTTCCCCGCGGGAGCTACCTGATTTTCACATAC
ACCACCCGAAAGTGGCCCCGACATGAACTCTATGACTAAGTTATATTTCA
TGCACACACACACTGTTGCTCCTGAAGTTCATGACGTACTTCGTATCGTA
TGTGCCATGATCATAGACGATGATGCAAGTCTCGCACGCAATACCCCTAC
TATACTACTCCTGTAGCACCACTACTGCTGCCTACTGTCACAAGCGCGTG
CGTGTGTGTGTGTGCGTCTGCGTGCATGGATGTGTGTGTGGTGTTGAGAG
GAGATATATGACGGGATATGTCAGCACATTGTGATACGAAGTACATACAT
TATGAACGACAGCAGCACAACTAAGTTACAGAGTGTGTCGGGCCACTTTC
GGGTAGTGTATGTGAAAATCGGGTAGCTCCCGCGGGGAAAGTAGCCAAAA
CCGGGTATACCTGCCAGAAATCTGGCGAAGACCGGGTGGCGGCGCGGTTT
GGCCAATGGGATTCCTCCCTGAGACCATTTCCATCGGCGAAAAAGGGTAC
CCGATAATGGCCACAAAACCACCGATATACCCGTTTTTGGCCAATTCCTC
TTTACAACAGATATGATGATCGGCAGTGACGCCAAACCAGTCCTCGAATA
CCCATTTTATGGAGTTACGCATAGTTTACCTGATCTCCTTGTTTTCCAGC
AGACGCACATGATCTGAAATTCATCACAGTTATCCCCCCCTAAGGTCCTC
TGCTTTAGGTTTAGCACGAACCAGTCAGTAATTCTCTCACTCTTACTTTT
CCACCGCTGCATGTGCTTTGATTTGATGGAAATCATTCCTGACTGAGCTC
ACCTCATTCCCAGATTCGGTTTTGCTCGTCTTGAACATATTTTTTACCAT
TAGTCATGAACCGTCAGGTGCCTCGCCCTATCAACAAAAGAGGGAGTGCG
CTACAGATGCTCCGGTGCCAAAGCCGAAAACGCTGTGCTTGCGCCAGCAA
AATTGCGCGGAGAGCCATATGCTGCCGCAGAATTTGTTTTTCCGGGGGGT
TTGTTCCACTTCTCGGATATCCTTGTGATGACCAAGTCATTAAGGTACCA
CCATATATCCGCACTATCTTTTGAAAATAACACCAAGAGTATGTAGATAT
GTGTATGCACACGTCCCCATCCCAGAACCATCTCTCCGCTTCACGTCATG
TTTTCACCCATCTCGGTCGAATTATGAGGAGACAACAGTGTATGTCAATG
CTGCTGTCTGTCGAACTATGTCTTCCGCTGCAACATGCACACCGTGGGCA
TCAATACAGCAGTAGCGAGGAGTTTCCACCTTGCGCACGAGGGGTTTCAA
CGGCAACAAGATCGTTTACTGTTGATTTGCCAATGTTCGGCAAATCTACT
ACATCGACAAACGTTGATGGCTCGCAACGGCAACAAGATTGTTGACTGTT
GCTTACCAATGTTCAGCAATCTACTGCTGTATAGTCAAACGTTGACGGCT
CGCAGCAAAAGCTGTGAACACAGACCCTCTAAAACTCCGTACACTACGTT
GTAATGATCGACGGTAAGGTCACTTGGAAGTGTTCGCTCGCCGATGCCCT
CCAAGGGTCAATGTATTCCAATCTCGTGTTTGTTGAAAAGCTAATATCGA
CTGAAGGAAATCACCAGGGTGGAATGTTTCACGACGTTGATCTAGCTCAT
GCGCTGGTTTCATTATCATGGTATCGCCTGACAGGGGTCAACGCCGCATA
GCTTCTTTGAGTTGCGTTGTCCGCAATTTTACCTGCTCTGCTATCCTGAC
ACTACTTCGAAGTATGTTATTCCGCGTTTCACCCCCGAACTGTGAAATAT
AATCGTCTCCAACGTCGCATGGAGATGTTCCCAGGACACCAAACCAGTGC
GGTGGCTCGCAACTGAGCCATGTAAAGTAATTGCTCTATGTGAACGTGTG
TAGATTGCGTATCTGCAACCGTCAAGAGTCTGCAGGACAGACTCAAACCC
TTTTTAACCGGTTCTACCACGGCGACCGGATTTTTACAACAGTGATGCTG
ATGGGTCACGCCTTGAAATTCTTGGATACATGCATGCGTGACACGTTTGA
TTCGACACTAGGCGACATGATTATTTCCGTAGCCGCCCCAAGCATTACCA
AATCTAGGGCTGGATAGTGGTATCACTACATTCCAAATGGCTTTGGTGCT
ATGTCAGACTTGATTTCTGGGAAACTATTTTTTTAATTTTTGTTCGGAAA
ATACCAACGAAACGAATATTACTAATTCCAACAAAACCCCCAAGACAACA
CCGTACCTTACACGAGGCTTCACGGCCGCCTTGGAATCTTCGGTAGGAGC
TGCACCTGGACACCTGATCATGTAAACAAATACTGTAATCCCGCGGGAAG
TGAATCTGCAGATCTGGTTGTGACAAGGATACACTCCCTGCGTTCATCGA
ACGGTGAATGATCATTGTCAAAGATATTCAATCTTCTGAATATGTGCCTC
CCCCTTTTGTTAACTTCATAGCTGCAAAGTACGCGTGTAATTTTGGTCAG
CAACGTGCATGACAGCTGCAGTACAAATTGCGAACCCTCCCAACGGACAT
AAAGTTGTACACCCTCAACGCGTTTGACCGATTTTCGTGTTTGGCCAAAG
CGAGACAAATAAGACGCACAATAAATCAGTGCGCATTAGTTCTCGACCTT
TGCGCAAATTACCGGAGTGTTTTTTTCCTTGTCTCAACACCAACTTGGCA
AATGCGCTTCAACTGAGTAAGAAATTGCCCTCTAACCCGGCACAAGCCCA
GTCGATCGTGCACGATACCGTCTAAGCACGTGCACAAAAAGTTCAAATCT
ATGAAGGTGTTGACGAAATCGAAGCATGTGGTACCCGATCATGCCAACTG
AATGTTTCTGTAACTTGTAGATGCCACGCGACCTGACACCAAATACCACA
TCTCGACGAGACGACTCTTCCTGCATGCGACTCTATCACCGTATGATATA
TCATAAAGACGGCACGCAGAGCCACTAGCAAGCAACGGTATCGAAGACAT
CTGCAGTATTTTGTTTGTATAACTGTTAATTACCGAGGACTCTGCGCATT
TCATTTTTCATTTTTGCGAAACCCTAGCCGTGTGTGAGCATACAAGAGCT
CATGTTGAATTCAGTTGGGTAACCTATCGTGTCCAAACTTCACATTTTCA
CACCTCCGTCGAACGAGTTTATCATCTGCAGCCATCGACGATTGCATGTG
TACTCACAACACCCGCCACCTACTCGCACACTATGATCAAGACGTCTACT
TTACCTGGTAATACTTGTCACAACAACCAGTTCCTGACCAGTGGAGTTCA
AAATGTTTTATGTTCACGGTATATCCACAGCAATATACCCATCGCAAGAT
GGACTTGAGACGCAGGTATTGTGAATGACGGCCGTATTGGCATTACCACA
GCACAACGTATGAATAGAAAAACCTTATCGGAAGATTCCCGTCAAGGTTT
GTTGATCTTCTGGATATTCGATGTACACCTGACTTTCTTTCCGGTCGGCA
AGGTCAACTCATTGGTTTCCCCTGTGCCACTTCCCTCTTGGACCTCGAGC
CGAATTCATGAAAGAAAAGTTGTGTCGCCTGCCCCTGGTCGTGAGCCAAT
GCGACTACTCCTATTGGGCCCTCTGCGGCGTCGTTTACGTAGTCTAGGTC
TACAGGTGCTGGATTTGCTCTGTTTGCCCTCTAAAATTACGCCTTAGCTT
CCTTACAAGACTTTTCGAACTTTCACAACGCCCCCCCTCTCTTTTGCCCT
TTGCCCCTCTTTACCCACAGTCAAGTCTGGGTCCTTCGTTGCCCCCGCCG
TGCGCGCGACCTCCATGGTCGCACCTAAGACCACCATGAACATGGGACTC
GAGCAGATCGTAGAAGTGCTCCCCGTCGTACCGGCGGAGGCACACAACAC
GGCTCTCGAGATGGCAAACAACCCGCTGCTGCTGTCGCTCAGGGCGGACT
CTTTCGGAGGATTGATCGGACCCATCGCCGGATGCCTCGCTGTGGCCACT
TTCATCGTCATCATGGCCCCCCCGCGGGTGGACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig71:621966..627501-

>mRNA_P-littoralis_Contig71.162.2 ID=mRNA_P-littoralis_Contig71.162.2|Name=mRNA_P-littoralis_Contig71.162.2|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig71:621966..627501- (Pylaiella littoralis U1_48)
ATGAAGTTCATCGCCGTACTCCTCGCCCTCTACGCCATGTGCGCTAGCGC
CTTCATCGCACCCTCGGCCGTCAAGTCTGGGTCCTTCGTTGCCCCCGCCG
TGCGCGCGACCTCCATGGTCGCACCTAAGACCACCATGAACATGGGACTC
GAGCAGATCGTAGAAGTGCTCCCCGTCGTACCGGCGGAGGCACACAACAC
GGCTCTCGAGATGGCAAACAACCCGCTGCTGCTGTCGCTCAGGGCGGACT
CTTTCGGAGGATTGATCGGACCCATCGCCGGATGCCTCGCTGTGGCCACT
TTCATCGTCATCATGGCCCCCCCGCGGGTGGACTAA
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