mRNA_P-littoralis_Contig709.5.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig709.5.4
Unique NamemRNA_P-littoralis_Contig709.5.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: A0A6H5KZA6_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA6_9PHAE)

HSP 1 Score: 471 bits (1212), Expect = 2.010e-155
Identity = 225/272 (82.72%), Postives = 247/272 (90.81%), Query Frame = 3 
Query: 1068 ERYSWVPSLRGSKPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLE--AESAGDEIDS-SPPDREGGTARSV 1874
            E+Y+W+PSL  SKPSRECIRRVRNDIR+ MRDP+PGLFVYPDEDLVTVVHALVTGPFDTPYEGGF+YFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYA+GKVCLSILGTWNGPRW+PV S+SSVLLSIQSLMNE PYHNEPGFE ASNPQDVRDY+DCITHE LRVAVC+M DDSSL NSMP+CFQALTRDLFLSFVPRY+LVCEQN+HRDG KL DPFG+N GTFRYASIARSIKRIA+ LE  A +  DE+D  +PP  +   AR++
Sbjct:  120 EKYNWMPSLCRSKPSRECIRRVRNDIRSAMRDPIPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYANGKVCLSILGTWNGPRWTPVHSISSVLLSIQSLMNEKPYHNEPGFEAASNPQDVRDYSDCITHETLRVAVCAMADDSSLSNSMPACFQALTRDLFLSFVPRYELVCEQNMHRDGGKLVDPFGENRGTFRYASIARSIKRIASLLEPAAPAEADEVDPVAPPPGQNVGARTM 391
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: D7FWD9_ECTSI (Ubiquitin-conjugating enzyme, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD9_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 9.270e-139
Identity = 202/242 (83.47%), Postives = 219/242 (90.50%), Query Frame = 3 
Query: 1146 RTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLE--AESAGDEID--SSPPDREGG 1859
            R   RDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGF+YFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYA+GKVCLSILGTWNGPRW+PV S+SSVLLSIQSLMNE PYHNEPGFE ASNPQDVRDY+DCITHE LRVAVC+MVDDSSL NSMP+C QALTRDLFLSFVPRY+LVCEQN+HRDG K+ DPFG+N GTFRYASIARSIKRIA+ LE  A +  DE+D  + PP ++ G
Sbjct:    4 RANRRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYANGKVCLSILGTWNGPRWTPVHSISSVLLSIQSLMNEKPYHNEPGFEAASNPQDVRDYSDCITHETLRVAVCAMVDDSSLSNSMPACLQALTRDLFLSFVPRYELVCEQNMHRDGGKMVDPFGENRGTFRYASIARSIKRIASLLEPAAPAEADEVDPVAPPPGQDDG 245
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: A0A812B0C6_SEPPH (UBE2Z n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812B0C6_SEPPH)

HSP 1 Score: 285 bits (729), Expect = 5.410e-86
Identity = 126/245 (51.43%), Postives = 172/245 (70.20%), Query Frame = 3 
Query: 1104 KPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLEAESAGDEIDSS 1838
            KPS +CI R++ DI T+  +P PG+ + PD++ +T +HAL+TGPFDTPYEGGF+YF++ CP DYP  PPRV+LMTTG G VRFNPNLY SGKVCLSI+GTW+GP WSP QS+SS+L+SIQSLMN+ PYHNEPGFE   N  D + YND I HE LRVAVC M+++     + P   + +    F ++   Y+ VC+ N+ + G+ + DPFG   G+F Y SI + ++ I   L+ +    +++ S
Sbjct:   41 KPSHQCILRIKRDIMTIYNEPPPGMCIVPDKEDITEIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGDGRVRFNPNLYRSGKVCLSIIGTWSGPSWSPAQSLSSILISIQSLMNDKPYHNEPGFEQERNAGDAKRYNDVIQHETLRVAVCDMLEERC---ACPEALREVMEKSFPAYYEYYESVCKANLQKQGQSMLDPFGDKRGSFDYQSILKRLQAIKKKLDEKQEVSDVEES 282
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: V3ZYE3_LOTGI (UBC core domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZYE3_LOTGI)

HSP 1 Score: 284 bits (727), Expect = 1.090e-85
Identity = 133/272 (48.90%), Postives = 179/272 (65.81%), Query Frame = 3 
Query: 1080 WVPSLRGS----KPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLEAESAGDEIDSSPPDREGGTARSVDVT 1883
            W PSL G     K S +CI R++ DI T+ ++P PG+F+ PD+D +T++H+L+TGPFDTPYEGGF+YF++ CP DYP  PPRV+LMTTG G VRFNPNLY +GKVCLSILGTW+GP WSP QS+S++L+SIQSLMNE PYHNEPGFE   N  D + YND I HE +R+AVC M+         P   + +    F ++   Y+ VC    ++ G+ + DPFG+  GTF Y ++   +K I + L       E + S  D + GT   +D +
Sbjct:   30 WDPSLSGDWDKVKASPQCIMRIKRDIMTIYKEPPPGMFIVPDKDDLTIIHSLITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGDGRVRFNPNLYKNGKVCLSILGTWSGPAWSPAQSLSTILMSIQSLMNEKPYHNEPGFETERNAGDAKRYNDIICHETIRIAVCDMLMGKI---HCPDALREVMEKSFPNYYDYYEGVCHSCKNKQGQSMQDPFGEKRGTFDYETLLNKLKMIKSKLS------EKNDSSDDMDDGTDSDMDTS 292
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: A0A4W3JHM2_CALMI (UBC core domain-containing protein n=6 Tax=Chondrichthyes TaxID=7777 RepID=A0A4W3JHM2_CALMI)

HSP 1 Score: 286 bits (731), Expect = 1.260e-85
Identity = 132/266 (49.62%), Postives = 174/266 (65.41%), Query Frame = 3 
Query: 1077 SWVPSLR----GSKPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLEAESAGDEIDSSPPDREGGT 1862
            SW P+        KPS+ C+ R++ DI ++ ++P PG+FV PD   +T +HAL+TGPFDTPYEGGF+ F+  CP DYP  PPRV+LMTTG  TVRFNPN Y +GKVCLSILGTW GP WSP QS+SSVL+SIQSLM ENPYHNEPGFE   +P D ++YN+CI HE LRVAVC M+D        P   +++    F+ F   Y+L C+  +H  G+ + DPFG+  G F Y ++   ++ I   L+ ++  + ID        GT
Sbjct:   71 SWDPTFSTDWDSEKPSQPCLLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGSNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNYNECIRHETLRVAVCDMLDGKC---PCPDALRSVMEKSFIEFYDFYELSCKDRLHLQGQTMQDPFGERRGHFDYQTLLNRLQAIRQRLKTKAENEVIDPDSDSSSSGT 333
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: A0A836C6T8_9STRA (Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6T8_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.860e-85
Identity = 134/247 (54.25%), Postives = 173/247 (70.04%), Query Frame = 3 
Query: 1068 ERYSWVPSLRGS-KPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVA-SNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANL 1802
            +R SW P  +    P+REC++R+  D+R VMR P+PG+FV  DE   T+VH LV GP DTPYEGGF+YF+L  PD+YPH+P +VRLMTTG GTVRF PNLY +GKVCLSILGTW GP W P  ++SSVLLSIQSL+ + PYH EPGFE   S+ +DV +Y+DCI HE LRVAV  M  D      MP   +++ +DLF++F   Y++VC  N+HRDG  + DPFG   G F+YA+    I+++   L
Sbjct:   54 QRDSWQPKEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 300
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: UPI001B88CC4A (ubiquitin-conjugating enzyme E2 Z-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CC4A)

HSP 1 Score: 283 bits (723), Expect = 3.440e-85
Identity = 126/234 (53.85%), Postives = 165/234 (70.51%), Query Frame = 3 
Query: 1104 KPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLE 1805
            KP ++CI R++ DI ++  +P PG+ + PD+D +T +HAL+TGPFDTPYEGGF+YF++ CP DYP  PPRVRLMTTG G VRFNPNLY +GKVCLSI+GTW+GP WSP QS+S+VL+SIQSLMNE PYHNEPGFE   N  D + YND I HE LRVA C M++      S P   + +    F ++   Y+ VC+  +H  G+ + DPFG+  G F Y SI + +++I   LE
Sbjct:   39 KPKQQCILRIKRDIMSIYSEPPPGMCIVPDKDDITKIHALITGPFDTPYEGGFFYFLIRCPPDYPIHPPRVRLMTTGDGRVRFNPNLYKNGKVCLSIIGTWSGPAWSPAQSLSTVLISIQSLMNEKPYHNEPGFERERNAGDTKRYNDIICHETLRVATCDMLEGKC---SCPDALRQVMEKSFPTYFEYYESVCKTGLHLQGQTMQDPFGEKRGIFDYQSILKRLQKIKKTLE 269
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: A0A817GWG5_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817GWG5_9BILA)

HSP 1 Score: 285 bits (729), Expect = 4.210e-85
Identity = 128/240 (53.33%), Postives = 173/240 (72.08%), Query Frame = 3 
Query: 1107 PSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLEAESAGDE 1826
            P+  C+ R++ DI  V +DP PG+F+ PD D +T +HALV GPFDTPYEGGF+YF++ CP DYP   PR RLMTTG GTVRFNPNLY +GKVCLSILGTW+GP WSP Q +SS+++SIQSLM+ENPYHNEPG+E      D ++YN+ I HE LRVAVC M+++    NS P   + +    F  F   Y  VC++N+ +DG+ +ADPFG++ GTF+Y+SI   + ++   LE +S+ ++
Sbjct:   50 PNATCLARIKRDITGVFKDPPPGVFIAPDPDNITKIHALVVGPFDTPYEGGFFYFIIRCPPDYPIRAPRCRLMTTGNGTVRFNPNLYRNGKVCLSILGTWSGPSWSPAQCISSLIISIQSLMSENPYHNEPGYEQERISGDSKNYNEIIKHETLRVAVCEMLENP---NSCPQQLREIIIKQFFDFFDYYVDVCKENLAKDGQLMADPFGEHRGTFQYSSILTRLNKLKVKLENQSSSNQ 286
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: UPI001E1DBBE2 (ubiquitin-conjugating enzyme E2 Z-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBBE2)

HSP 1 Score: 282 bits (721), Expect = 6.950e-85
Identity = 131/263 (49.81%), Postives = 175/263 (66.54%), Query Frame = 3 
Query: 1080 WVPSLRGS----KPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANL-EAESAGDEIDSSPPDRE 1853
            W P L       K S +CI R++ DI T+  +P PG+ + PD+D +T +HAL+TGPFDTPYEGG++YF++ CP DYP  PPRV+L TTG G VRFNPNLY +GKVCLSI+GTW+GP WSP QS+SSVL+SIQSL+NE PYHNEPGF+   N  D + YND I HE LRVAVC M++      + P   + +    F  +   Y+ +C+ N+H+ GE + DPFG+  G F + SI + +++I   L E +    E +SS  D E
Sbjct:   27 WDPGLSSDWDKEKSSNQCILRIKRDIMTIYNEPPPGMCIVPDKDDITKIHALITGPFDTPYEGGYFYFLIRCPPDYPIRPPRVKLQTTGDGKVRFNPNLYKNGKVCLSIIGTWSGPAWSPAQSLSSVLISIQSLLNEKPYHNEPGFQTERNAGDAKRYNDIIRHETLRVAVCDMLERRC---NCPEALREVMEKSFPDYYDYYESICKNNIHQQGEAMQDPFGEKRGQFDFESILKRLEKIKTTLSEKQIVSSEDESSDTDME 286
[Close]
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Match: A0A0L8HM47_OCTBM (UBC core domain-containing protein n=3 Tax=Octopus TaxID=6643 RepID=A0A0L8HM47_OCTBM)

HSP 1 Score: 281 bits (719), Expect = 1.450e-84
Identity = 129/246 (52.44%), Postives = 173/246 (70.33%), Query Frame = 3 
Query: 1104 KPSRECIRRVRNDIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSVSSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSMVDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQNNGTFRYASIARSIKRIAANLEAES-AGDEIDSS 1838
            KP+ +CI R++ DI T+  +P PG+ + PD++ +T +HAL+TGPFDTPYEGGF+YF++ CP DYP  PPRV+LMTTG G VRFNPNLY SGKVCLSI+GTW+GP WSP QS+SS+L+SIQSLMN+ PYHNEPGFE   N  D + YND I HE+LRVAVC M+++     + P   + +    F ++   Y+ VC+ N+ + G+ + DPFG   G+F Y S+ + +  I   LE +  A DE  SS
Sbjct:   39 KPTPQCILRIKRDIMTIYNEPPPGMCIVPDKEDITEIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGDGRVRFNPNLYRSGKVCLSIIGTWSGPSWSPAQSLSSILISIQSLMNDKPYHNEPGFEQERNVGDAKRYNDVIRHESLRVAVCDMLEERC---TCPQALREVMEKSFPTYYDYYESVCKANLLKQGQTMLDPFGDKRGSFDYQSLLKRLHAIKKKLEEKQIASDEEGSS 281
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig709.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZA6_9PHAE2.010e-15582.72UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FWD9_ECTSI9.270e-13983.47Ubiquitin-conjugating enzyme, putative n=1 Tax=Ect... [more]
A0A812B0C6_SEPPH5.410e-8651.43UBE2Z n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]
V3ZYE3_LOTGI1.090e-8548.90UBC core domain-containing protein n=1 Tax=Lottia ... [more]
A0A4W3JHM2_CALMI1.260e-8549.62UBC core domain-containing protein n=6 Tax=Chondri... [more]
A0A836C6T8_9STRA1.860e-8554.25Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Tribonem... [more]
UPI001B88CC4A3.440e-8553.85ubiquitin-conjugating enzyme E2 Z-like n=1 Tax=Gig... [more]
A0A817GWG5_9BILA4.210e-8553.33Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
UPI001E1DBBE26.950e-8549.81ubiquitin-conjugating enzyme E2 Z-like n=1 Tax=Mer... [more]
A0A0L8HM47_OCTBM1.450e-8452.44UBC core domain-containing protein n=3 Tax=Octopus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig709contigP-littoralis_Contig709:45331..56965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWD9
Preferred nameUBE2Z
PFAMsUQ_con
Model size2554
Max annot lvl2759|Eukaryota
KEGG koko:K10585
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons8
Evalue3.67e-143
EggNOG OGsCOG5078@1|root,KOG0895@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-09_004050.1
EC2.3.2.23
Descriptionubiquitin-protein transferase activity
Cds size1716
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig709.5.4prot_P-littoralis_Contig709.5.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig709 45780..56576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791477.4280632-UTR-P-littoralis_Contig709:45330..457791680791477.4280632-UTR-P-littoralis_Contig709:45330..45779Pylaiella littoralis U1_48UTRP-littoralis_Contig709 45331..45779 -
1680791477.5482857-UTR-P-littoralis_Contig709:56576..569651680791477.5482857-UTR-P-littoralis_Contig709:56576..56965Pylaiella littoralis U1_48UTRP-littoralis_Contig709 56577..56965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791477.447413-CDS-P-littoralis_Contig709:45779..461791680791477.447413-CDS-P-littoralis_Contig709:45779..46179Pylaiella littoralis U1_48CDSP-littoralis_Contig709 45780..46179 -
1680791477.4607143-CDS-P-littoralis_Contig709:46758..468601680791477.4607143-CDS-P-littoralis_Contig709:46758..46860Pylaiella littoralis U1_48CDSP-littoralis_Contig709 46759..46860 -
1680791477.47674-CDS-P-littoralis_Contig709:47466..475681680791477.47674-CDS-P-littoralis_Contig709:47466..47568Pylaiella littoralis U1_48CDSP-littoralis_Contig709 47467..47568 -
1680791477.4873884-CDS-P-littoralis_Contig709:47938..480491680791477.4873884-CDS-P-littoralis_Contig709:47938..48049Pylaiella littoralis U1_48CDSP-littoralis_Contig709 47939..48049 -
1680791477.5005367-CDS-P-littoralis_Contig709:52997..531301680791477.5005367-CDS-P-littoralis_Contig709:52997..53130Pylaiella littoralis U1_48CDSP-littoralis_Contig709 52998..53130 -
1680791477.5118709-CDS-P-littoralis_Contig709:54122..542201680791477.5118709-CDS-P-littoralis_Contig709:54122..54220Pylaiella littoralis U1_48CDSP-littoralis_Contig709 54123..54220 -
1680791477.5240011-CDS-P-littoralis_Contig709:55758..563921680791477.5240011-CDS-P-littoralis_Contig709:55758..56392Pylaiella littoralis U1_48CDSP-littoralis_Contig709 55759..56392 -
1680791477.5358047-CDS-P-littoralis_Contig709:56440..565761680791477.5358047-CDS-P-littoralis_Contig709:56440..56576Pylaiella littoralis U1_48CDSP-littoralis_Contig709 56441..56576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig709.5.4

>prot_P-littoralis_Contig709.5.4 ID=prot_P-littoralis_Contig709.5.4|Name=mRNA_P-littoralis_Contig709.5.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=572bp
MEEMKEHTGSAVLPAPPPKGPGATSSSSAPSSALLSALTEEARSPTTTTT
TTTTATAAGSVPLAAAVTAAAAAAAAAATATASASTPPAASAVAYSPPLP
GAAAREKRDARAAAPLGGAEGSGPRGCACDGGTTAKVGAESSGSGKGKGT
AGVDAAEGVAGVNAAEGVGAGVAAAVGGGIDSPGTGDAAARIKAAIEAAV
AGSSGGGGGGGGSGGISSSGGGGGVPERYSWVPSLRGSKPSRECIRRVRN
DIRTVMRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFYYFVLHCPD
DYPHSPPRVRLMTTGGGTVRFNPNLYASGKVCLSILGTWNGPRWSPVQSV
SSVLLSIQSLMNENPYHNEPGFEVASNPQDVRDYNDCITHENLRVAVCSM
VDDSSLWNSMPSCFQALTRDLFLSFVPRYQLVCEQNVHRDGEKLADPFGQ
NNGTFRYASIARSIKRIAANLEAESAGDEIDSSPPDREGGTARSVDVTPT
ATGTATATAAASGGSGSGGGGGAETGAGVVSSPGGAKGNERGSSGMGRIE
KGGGTRNRNGNGARSPSSAFR*
back to top

mRNA from alignment at P-littoralis_Contig709:45331..56965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig709.5.4 ID=mRNA_P-littoralis_Contig709.5.4|Name=mRNA_P-littoralis_Contig709.5.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=11635bp|location=Sequence derived from alignment at P-littoralis_Contig709:45331..56965- (Pylaiella littoralis U1_48)
GACTCGAACGTCGACGAAATCGACCACTTTTGAATACCCGTCATACGGCC
ATCCTGAATTCATGGAAACCCTCTTCGTGTGAGGTGCGAGACGTACCCTT
TACCCTCCTGGGTTACGCCCCAGTGGAGTGCGTGACTGGCCTGGCCCTCG
ATACCACCACCGCTGCTGTTGTGGTCATTTTTCGCCCACACCCCGATTTT
TCAATCCGAGCATAAAATCTTGTCTGTGGGCGTCCATTAGTTGTTAACAA
CCGCCGGTTACGGCGGCTACATCGTGTCGGTCAGGCGGCGATAGCCACGG
TTCGCTACGCGACCGTTTGTGAGCTGGCGGGTGACAGGCAGTTAGACAGA
CAGACAGATAGACAGACAGACAGAGAGACAAGACACACCATGGAGGAAAT
GAAGGAGCACACGGGCTCTGCTGTGCTGCCTGCTCCTCCCCCAAAAGGGC
CCGGAGCAACCTCATCATCGTCCGCACCGTCATCAGCGCTGCTGTCAGCC
TTGACGGAAGAAGCCCGATCCCCGAAGAAGGAGTCGGCTTCCGGAAGCGC
AACGACAATACCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAG
CTACAGCAGCAGGATCAGTACCCCTAGCAGCAGCAGTAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAGCAACAGCATCTGCGTCAACACCTCC
AGCGGCATCGGCCGTAGCATACTCTCCGCCATTGCCTGGAGCAGCGGCAA
GAGAAAAACGGGACGCCCGTGCTGCTGCACCACTCGGAGGGGCCGAGGGA
AGCGGCCCGAGAGGATGCGCCTGCGATGGCGGTACAACAGCGAAGGTCGG
CGCCGAAAGCAGCGGCAGTGGGAAGGGCAAAGGTACCGCCGGGGTGGATG
CCGCTGAAGGCGTTGCCGGGGTGAATGCCGCTGAAGGTGTTGGTGCTGGC
GTTGCCGCTGCGGTTGGTGGAGGGATTGATTCGCCGGGGACAGGGGACGC
TGCTGCGAGGATTAAGGCTGCGATTGAAGCGGCTGTTGCGGGTAGCAGTG
GCGGCGGCGGCGGCGGCGGTGGCAGCGGCGGCATCAGCAGTAGCGGCGGT
GGCGGAGGCGTCCCCGAGAGGTACAGCTGGGTGCCCTCCTTGCGTGGAAG
CAAGCCGTCGAGGGAATGCATCCGGCGAGTGAGGAACGACATACGCACTG
TCATGAGGTATGGTTTGTGTCTTCGGTGTTTGCTTGGGCTGTGCTAGATC
GAAGGCGTTGTTGTTGTTGTTGTTGTTGTTGTCGTCCAAGCTCTCAAACT
TGTTGGAGTTGTCAACAAATGTCAAGATTGTTGTTTTCACTCACCAACCG
TCTCGACGTTCTCGGCCGGGTGCCGAGTGCGGTGGTGAACCGGCTTCTTT
TCTCACACCTCACCTCGCATTAGAAAGCGTTTTGTTTCGTGTGGGCTTGC
ACAGTCCGGCCGGAGAGCCGGCTTAGAAACGTCGACGAGGGAAGCGCGCG
GGGCCAAACCCTTCTCGCGTGAATTATCAAGCCAAGCACCGACCGCATAA
GGAAGATGTAAAAAAAACAGAAGACCGAAACCTATATTCAATAAGATGTT
AGTCTTCTTCCTGTCTGTGTGACCCCCACCCCGGCGGGTGCGCCCACACG
TACCGAAACTTTAAGGTGTAGACTGGCGTCCGCAAAAGGTTGGATGACAA
CGCAACGCAAACGCACACCTTTGAATATCGTGCCGATCAACTCAGGAAGA
TGCGCGTTCCCTTCAATTGTCGGTCATGGGTTGGCACCGATACCGATACG
TGCTTCCCGATATACTGTATCCAAATGAAGAGACGGCCCAGTCAAGAACC
CTTGTTAGTGACGAAATTGTTACTCGAAGAACAGTCAAGACCCCATCACT
TTAGAAAGGAGGGAGAGGGAGAGGGACAGACATCTAGAAGAGAGATAAGT
AGAGGGACAGAGGCAGACAGAGACAGACAGAGACAGAGACATACGGAGAG
ACAGACATGTAGGCAGACAGAGGAGAGGGAGGGAGAGGGAGGGAGATACA
GGGAGAGACAAAGAGGGACATAGAGACAAAGAGAGACATAGAGACAAAGC
GAGAGAAGACCAGTCGAGGACATGGTCAGGAAACAGATTCAAGACCATAA
GTCGATGGCTCAACAAGGCGGAGGATAAATGAGATGTAGATATCACCGAC
AAAGGGAGACAGTCAGACAGGGAAACAGAGGTCGAGAGAGAGGGAGAGAG
AGAGAGAGAGAGAGAGAGAGGAAACCAGCGGAGAACATGGTCAGGAAACA
GATTTCAGAGCACAAGTCGATGGCTCAACCAGGCAGAGGATAAATGAGAT
GCAGATATCACAAAGAGACAGACAGACAGACAGTAGAGAACATGGTCAGG
TAATAGATTCGCGAGTATAAGTCGATGGCTCAACCAGGCGGAGGAAAAAC
AATACTTCGAAGTGTGTAGATATCATATTGCACCTTTTGCCCCCCGCCGC
CGCATGCTGTACGCCACCTCTTGCCGTGTGCGGGCGCCGTGAGGCTCTTC
TTAACGTCGCTTGTCAATAACTTAAACCTTCTCGCTCGCGGTCTTCAATC
ATGTACGGCACTCGTGCACAGCGTGTGCCTCTCTCTCGCCTCTTTTCATG
GTGCGGATTATTGCTTGATGTGTTTCGCCGTTCGTGGGTGGGTGGGTGGG
TCGGCCGGCCGGCCGGCCGAATTTTTTTCTTGTTCTTGCTTGCAGGGACC
CCGTGCCCGGGCTTTTCGTCTACCCCGACGAAGACCTGGTGACCGTCGTC
CATGCCCTCGTCACGGGGCCGTTCGATACGCCCTACGAAGGAGGTGAAAA
ACCCAATTGACTGGTGTCGTGTCGTGGCGTGTGGGTCGTGTCGTGTCGTG
TGGTGCGGTGTGGCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCG
TGGCATCCTCTTTTCTCTTCCCTTTCTCTTTTGTTCTATCATCATGTTTC
ATGGGGTGACATTTCGTAGTAGACCAGTTTCCGCGCGGTGACATTATTTT
GTACTATGACCGGCCAGTTTCTGTATCCATGCCCGACAAAGAGAGTGAGG
GAGTGCGCGTGTGTATACAATACCCATGCGTTCGTCGCTTTTGTCACTTT
TTTTTGTTTTTGACAGCGCGGTCGTGCGATTTGATAATCTCCGTGAATCT
TTCGTTTATGTATTTGTCTTCTTTCGTTTGACTTCCTGTCAATGCGTGTT
TGATGATACTAGTTTTTCGATGTTCCAAGAGAAGGACGGGAATACGCGGG
ATGGGTACCCCCGGCCTAAAATATTACTCCGCAGTACGAAATATATCAGC
TGAAATATACACGTGGCGATTCACGAAATACATACGTGGCGGTTCCCACG
TACACGTTTCTCCATTCCGTCTCGTCTTGAAGTGGATTGCCGTACAACGC
CGGCACTCTGTTTGCATTTTTTTCAGATGGAATGCCACTCGTGTAATAAA
CGTAAATGTCCTGTTCAGGAAAATCAAGCATGAAGTCACGGTTTCACGTA
TTCACTATTCCACGGCACGTGGGGGGTGGTGCGAGTTTAGTTCCAAGGAA
AAAACAAAAAAAGCTTCACGTGATAGAAAACTGGTTCAGATCAAGCCGCA
TCTATAATACGGGCTTTTTTTCAGCCCCTTTTTCCTTTTTCCGTGTTTGC
GTGAAACTTTTTTTTTGTTATGTTTTGCTGAGTCCCGGTTAAAACATACC
GGTACGAAGTACGAAGTACATACCTGGAATAATATTATCTTCCTGTAAAA
ACGGAACCCCCGATCCCCGACGCACCGCCCTTCAGGGTTCTACTACTTCG
TGTTGCACTGCCCCGACGACTACCCACACAGCCCGCCGCGGGTTAGGCTC
ATGACGACGGGGGGGGGCACCGTGAGGTTCAACCCGAACCTGTACGCCAG
CGGGAAGGTCTGCCTCAGGTAGTGGAGTGATATACTGCTGTGTCCCCCGG
GTACTACTGAAGACGTCGAAGCTGTGAGCTGCTTGCTGTATTTCTTTTTT
TGCGCTGGCTCCTTCTTCTGCGTTTGGTTTTATTCATTTTGCCACACCGG
TGTCACACAGAAGGAAGGTCACACAGAGTAATTTTTTTTGTATTTCTCCA
CCCACCTCATGCGGTGTGCCCAAATCATGTCGAAAGGTTTGGGCTTGCAT
GGCGTTGTCCAGACCAAGAAAATATGATGAGACAAGACGCACATACTGCT
GTAGTCACAAACGCTCACACCGGGTCTCGAGAGACGGCTCCTTGGCTCGC
GTAGATTGTTTAGTGCTTCGTTGTCGAGCGTCCGTTGGCTTAATCAGCCG
GTAATGATGACCTGCGCTTTTTGGCAGGTTTTTGTTTTTTATTTTCACTA
TTTTTGGCCTTGAACAAGGTCATTAATTCTCGTATTCATTCATTCATTCA
TTCATTCATTCATTCATTCATTCATTTTTTCGTTCTGCATGCTGTCATTT
TGTATCCCTGTGGCAGGCTTTTGTACTAAATCTCCACTCTGCGGCCACAC
AATAAAAACGATCAATTCATTATTTTTTTTAATTCATTCATTCATTTCGG
CATCCATACACTTCTTGGTTTGCATGCTGTCATTTCGTACCCCGCCACTC
TGCGCCCATCCTCCAGAGACACCGACTTCGTTGACTGAGCGTTTTTTTTT
TTTCTCTCTAGCATTTTTTCCGATTTCTTCATTTTTTTTTTTCTCTCTAG
CTTCTCGAAAGTTTTGAGAATAAGACACCCGAGACGGGGCCCCGTGTTGA
GTTCTTTGCAGAGAGGGTTTCATAAGTCGGCCGGTAATAAAAACACCTAT
AGATAAATATATACGAAGTATGTGCATCATAGAATAATGATAATTATTTT
GTTTCTTTTTTTTTATCGACTCGAAAAGACGCCCGTGTTGTCGTAGTGTC
TGTTTTTTCTTTGTTTTCTCTTCTTTTTAGTTTTGCTCTCATGGTTTGCT
CCGGTTTCTTTCGTGAATTTTGGTCGGGAATAAAACGTAAAACCGATTCA
GAGGATCTGGATGATTGCAGCAACTCACCGACCACAACTCTGCCAGGTCA
ACAGCAATTTTTTGTATTTTTTCATCTCTTCACTCTGAAGCCGTAAAACC
AATAATTCGGGTGTTCGTTCATTCATCCATTCATTCATTCATTCATTCAT
TCATTCATTCATCCATCCATCCATTCATCCATTTATTCATTCGTTCATAC
ATTCATTCATACGTTCAAAAATTATTTACACATTTATTTATTCATTTATA
CATTAATACATTCGAACATACATACATACCCAGTAGCAGGAGGCATGAGT
GCGACTGAGGAGACCAAGCGTGAACAGGCAGACCTCGTGGCAAGACATGT
TGCGATTGATTGCATGCCAATTATTTTATTATTATCAACCGCCCCCCCCC
CCCCCCCCCGACTTCCGGTACTTCCGGTCTTCTTTTCCCTTTTCGTTCCC
CTGCTTCCTCTTTGTTTGGCGGCCTGTTTGTTGTGTTTGTGTACGAATGC
ACTCCCTCAGTCTTTCTGCCCTCCCAGTATCTTCTTCTTTATTATGGCTT
TCGTCTGTTGATCATGTAGTTACTGGACCATGCGCCCTGGTTTGCCTTTG
CCTTGGTCTGTCATGACCCTGGCCCTGGTTCGATGTACGAAGTACTTCGA
AGTATATGGTTATGGTTGAGGTTTGTCTTTTTTAATTGTTGGAACTGTTT
CCAATTTTTGTTTTTTCTTTCGAACCTGTTGTTTTTATTTCTGGATTTTG
TTTGGTACTTTGGCTATCACAGATGGTACAACAACGGTACCCTATCTGAT
TTGACTGTGGGTGATCATAGTCCATTTTTTTTTTTTCTTCTAGCACGATA
TGTGCCTGGTTTGTGGCCACGGGCTGAACTGCGGCGGTAGTGAGCTAATG
TGAGAATCAACAACACACGCATGCATACATACATACTTCGAAAGGTACAT
ACATACATACCTGCATACATCCATTTGTTCATTCATTCGACCCTTTCCCG
CGTTTTTGTTTTGTTATCCTCTCGCCCAGCCTCCTTCCAAGATTGCGTAT
CATATCGGCTCGTGGAAAGCGTGCTCTTCTTCTTGATCAGTCGAAAACGT
ATTCAGAAGCTGTTTCATATCTCACGCTCTGGGAGTTTGACCATACACAC
ACAAACACACACAAACGACTTCGACGGCCGTGAAAACATTCGTTCATGCA
TCAACATTCGTTCACTAGTCTGTGCATGTTTTACTTTTTACTTTTTTATC
CCTCACTCGTCTTCAAGGGATATGATACAGCTTGTCATTCAACATTTATT
CATGCACTCATCCAATCATCCATCCATTAATTCATGCATTCATGCATTCA
TGCATTCATGCCTTCGTTCATGTATTCGTTCATTCATACATTCATTCATA
CTTTCATTCAACACCCATTCACGCACTCATCCATTCATTCATGCATGCAT
TCATACATTCATTCATTCATTCATTCATTCGTTCATGCATTCGTTCATGC
ATTCGTTCATTCATACATTCATTCATACATTCATTCAACATCCATTCACG
CACTCATCCATTCATTCATGCATGCATTCATACGTTCATTCATTCATTCA
TAATTTACATTCAACATTCAATTTATTCATTTACTCATTTATTCATTCAT
TTATTCATTCATGAATACATTTTCTATACATCCGTACATACATCCGTACA
TACATACATACATACATACATACATACATACATTCATTCATTTGTTCATT
CATTTGATCCTTTCGCATGTTTTTGTCCAGATATCTTCTCACCCAGCGTC
CTTCTTCCGAGAGTGCCCATCATATCGGCTCGCAGAAAGCGTATTCTTGT
TCTTGGTCAGTCGAAAACGTATTCAGAAACTATTTCACATCTCACGCTCT
GGGAGTTTTACCTCACACGCACACCACACGGATACAGACAGACACACGCA
CAAGCACAAGCACACACACACACACACAACTTCTACGGCCGTGAAACCAT
TCGTTCGTGCATCAAACCTTCGTTCACTAGTCTGTGCATGTTTTCATTTT
TTTCATCCCCTCACTTTGCCCCCGTTTTCGAGGGATATGATACAGCCCGC
CGGCTCGAGGCTCGAGGCTCGAGATTCGCTTGTTCGTCGTTAACTACTGG
ACAAGTCTCATCTCGTACGCTCTTGTCAGTTTTTTTTCAGTTGTCACGTT
GCGGCCATCAAGTCACTCGTTCATTCATTCATTCATTCATTTTTTATTGT
TTTCATTTCCTTGTCTGCGCTTTTTTTTTTCACCCTCTCACTGCGCGTCC
ATCACTCTCGCCATTCCACGTGTACGTTTACAGCAGCAGACATTTATCCT
TGTCTCGTTTCGTTGAAGACCATCTCCTCTTATTCCTCCTCTTTTTTTTT
CTCGTTTTTCCCTCCAACAAGCGCTCTCTTTGTTTAACTCATTTCATGAA
CACAGACAGCAGTAGTCATTTGTTCTTGGCGTTCCGGTTCTACCGCTGTC
CACAACCATCACCGTTGTCCCATTCAATGATCGCCTTCCTCCCGCACATT
CATTCAACTAACCACACCCCCCACAAGCACCAGCTTTTCTTTATCCCCTC
GTCTTTTCCGTGTATCCAGCATTCCAATCAATATCCATACGGTTTGCACT
TCCGTAGTAATTCCAACACCGACACTCATGGCGAATTCGTTCACCCACTC
AATTTTGATTCGTGTATTAGTTGCAGTAAAAATATTCCATGTGACCCCCG
GCTGATTGATGCACCCGCTTACGTCGGGAAGCTGGACACTGGATTGCGGA
ATATATGAAAAGCTCCTGGGTTGACCTTCCTCCTGTGTGACCCATCCCCG
GCTGACGCGCCCGCATTTTCCTTGCTAGCTAGGGTACTGTATATAGACTG
ACGCACGGAAGAAAAAACTGAAGAAATAACACACCATACGCACGCACAAT
GTGTATTCATATGACGCGTGATTCATGTGATTCAGCGACTCGTGTCTTCG
TGTTGGAAGACTTGCACTCATGTGTCCCAATATTCTGTCTATTTCATTCA
CTGTCATATACTTAAATAATGTACAGTATTCTCTTGTTTGTAAACCCCAA
CGTTTCACTTTGTGATACATACTGTACGTGGTTTCATTTCACTTTTTTCA
ACTTCACTTCAGCCATATTTCTGCGGTCCGACCGTCACCGAAAGCAGTCG
ATTATCCGTTTCCGAATTCCCGTCGCCTATGAATCATTTACCTTTCACGC
TTGCGCTTATCTTTCCCATTTGTAACCATTTTTCCCGAAAGTAACCTGTT
GCTCTTGCATTCGATTCATACTTCATACACTGAAGTATATTTTCCCGTCA
TCCATACATCCTCCATTTTTTCTTTGTCATACTCCGTACCGTATATATTA
TCCGATTTGTTGATTTGACTCAGTCTTGGCCCACGCCACAGCAGTACACA
CCCACCGTTGCTTTTGGCACCGCATTTTCGCCCATTTCCCCTCGGCCCTC
CCTCTTCCCTTGCTTTTTCTTAACGCGCTTATTTGGCACCCAGGCAAAGA
CCGGGATTTATTTAGCATTATTTCATTTTTTTCCCGCATTTTGAATTTTT
CACCGCGTCCTCACCGCGAGGCGAACCCGCGCTGGGCGTCATCTGGCGTT
GGGGTTGGGGTGGGGTGGGTCGACACCCTACACACTTTTTTCGTACAATA
TACCATGCATCGACAGTGTTTAAATCCATACATATTCCTCATGTATTTCA
GTCCTTGTCTGATACCGAAGTACTCGAAGTATGTTTTTGCTGCCGCCGCT
GGTATGATTTTCTCCTCCTTCGCGCGACCTGCCGATTTTTATGTTCATCC
TTCATGCCGCACGCAGTATTCTCGGCACGTGGAACGGGCCGCGCTGGAGC
CCCGTGCAATCGGTGTCGTCGGTGCTGTTATCCATACAGAGCCTCATGAA
CGAGAACCCGTATCACAACGAACCAGGGTAGGTAGGTGCGTGTTATCATG
AGTGCCTGCTGCCCGTGTCGGCGATTCATGCTTGTGTGGATGTTGTGGCC
ATTTGTATGATAGAAACCGCGCCATGATAAAGCAGTACCCGGCTGACCAA
TGGGACTTTTCCTGGAAATTTTCATTTATGTAAATGCGTGCGTGCTTGCT
TGTCTCTCTTGTTTTGTTGTCTTTTTTTCGAAACGTCGGCGGTGGCCCAA
ACAAACAGCATGTGTTACGCGTTTTTTTTGCGTCATTTGCGATTTCGATC
GTGTGTGTTTTCTGTGTGGTCATTTTGTGTGTGTCCGCCCGTGCTGGGTG
TGCGTATGTTGTTACTGATTTTTGTGGTCGGTCCGTTTTCAACACAGGTT
TGAGGTGGCGTCCAACCCGCAAGACGTGCGGGACTACAACGACTGCATCA
CGCACGAGAACTTGCGCGTGGCCGTCTGTTCGATGGTGGATGACTCAAGG
TAAACAGAATAAAGGTTGACAACAATGCTCGGCTACTGCTGCTGTATCTG
TTTTTTTCGTATATAAAGTCCGGACAGACGTGTTGTGCACAATTGATCGA
TGGTCACATGAGCTTGTCGCCACCACGCTTCGGCCGATTGGTGGTCATAA
ACCAGGCACCAACGTAAACGCTGGTGGAGCAGAATAAGCAACAAGAAAAA
ACTGTGATGAGCACATGAAGAGGGGGACTGATCTCCCAGAGGGCCAGAGG
GGGGCGGGTATCCTTTCGTGCCCAAAATAAAGAAGCAGGGATACTAGAAA
TACAAAAAATAATGCGAAGTTGCGAGAGAAAGACATGAAGTGCCCGCAGT
TTTCCTATTGGTCAACACTTAATGTCTTTCTCTGCTGTCATCGATCTTGA
GAGAGAACACACGAGAAACATAATCACAGCCTCGTTCAATTCATAGTCCA
CACAACAAGGTACGCCCGATCCATGCATACCTGATACCTGGTGTGCTAGT
TGTGTTGACAAACGTATTGTGCCACATCCTTTTCCTGCCCCCCCCCCACT
GTGCACACGTCACGGAACCCCCTCGTCCATTTGTGTGCGTGTGTTTTTTT
GTCAGCCTGTGGAACAGTATGCCGAGCTGCTTCCAGGCGCTCACCCGCGA
CCTGTTCCTGTCCTTCGTGCCCCGCTACCAACTCGTTTGCGAGCAAAACG
TGCATAGGTGTGTCAATTACCACCAGGACCGCAAAATTGAGGGGGCACGT
CTTCCTGTTCCAGAGACGCATTCTAGCGACAATCCGAAAGAGATATTTTT
GTGTGTGTACGACATTGCCCCCCGCTTATAACACGGCCCAGACTCGCATG
CATAGCAGACATACATGCACAGAGAGCTTTCGATCTTGCACTGCCTTAAC
CCTCTTTACCCCTATGCCTAAATGTCGCCATTTTGGGTCGCCCTCTTGTT
ACTCGTCACTTGGGAATATCACGTGACTACCAATACCTAAACTTTTTGCC
TCGCTAACCGCTAAATTTTAAAACGCATTCTACAAGCAAGTGAACGCGTC
GCCATTTTTTTTGGCGACGCGTTTACCTGCTTTTCCAGAGCTTTTGTCAC
AAAAAAAAAATCCAGATTTTTCACGGGAGGTTAAAAGGTTCAAGAAATCT
GCTTGTATTTTCACGTCATATCCTCTTTTTATGTGGTCGCTCTTCCCTCA
CCTGTGCGCTGTGTTGATCTCGTCTTTTCCTGCTTCGTTTTTTTTTTTTC
TGAATTTTTGTCCTACTTGTTTCATTTCGCCGACAGGGACGGGGAAAAGC
TGGCCGATCCTTTCGGACAGAACAATGGGACCTTCAGGTACGCCTCCATC
GCTCGATCGATCAAGCGCATCGCCGCCAATCTGGAGGCGGAATCTGCCGG
GGATGAGATTGATTCGTCCCCCCCCGACCGCGAAGGAGGTACGGCAAGAT
CCGTTGATGTTACCCCTACCGCTACTGGTACTGCTACTGCTACTGCTGCA
GCAAGTGGTGGTAGCGGTAGTGGTGGTGGTGGTGGTGCGGAAACCGGGGC
TGGTGTGGTTTCATCCCCGGGGGGCGCGAAAGGAAACGAACGCGGTTCTT
CAGGGATGGGACGGATCGAAAAAGGGGGGGGCACTCGCAATCGCAACGGC
AATGGCGCCAGGAGCCCGTCCAGTGCCTTCCGATAGCGAAAGGTGGTTAG
CGCTGTATCATAGTCGGCGATTGTACACCGCACAGTCCAAGGACCCATAT
GTATGCATATTTACCTCTTCATAATGCGTTGATTGAATTTTTTCTACATG
GCGGGTCTGTTGTTCGTGTATATTTGAAAGTAACTTCTCGTCGACGTGGC
ATTGCAGTAAACTGCCTCCTTCGGTGTGCAGAGAGGCAGCTGTGAAAACC
GCTCCCTCCACGACCGGCACGGCATGTAGTATGGTTGTTGCGACAGCGCC
AGCTGTTATAGATACGTGCTGTGAATAGATACGGACGACCATGTATAGTG
CACAGCAGTAGTGTGTAATTGTGGTCGTCAGTTCAGTTTGTAATTGTAAA
TGTTTAAAAAAGAAGCGGGCCATCAATTTTTTGTGATTTTTTGGCGTACG
CTCGTATCTCATGCCGAGGGATGCGGATGCTGCCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig709:45331..56965-

>mRNA_P-littoralis_Contig709.5.4 ID=mRNA_P-littoralis_Contig709.5.4|Name=mRNA_P-littoralis_Contig709.5.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1716bp|location=Sequence derived from alignment at P-littoralis_Contig709:45331..56965- (Pylaiella littoralis U1_48)
ATGGAGGAAATGAAGGAGCACACGGGCTCTGCTGTGCTGCCTGCTCCTCC
CCCAAAAGGGCCCGGAGCAACCTCATCATCGTCCGCACCGTCATCAGCGC
TGCTGTCAGCCTTGACGGAAGAAGCCCGATCCCCGACAACAACAACAACA
ACAACAACAACAGCTACAGCAGCAGGATCAGTACCCCTAGCAGCAGCAGT
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCATCTG
CGTCAACACCTCCAGCGGCATCGGCCGTAGCATACTCTCCGCCATTGCCT
GGAGCAGCGGCAAGAGAAAAACGGGACGCCCGTGCTGCTGCACCACTCGG
AGGGGCCGAGGGAAGCGGCCCGAGAGGATGCGCCTGCGATGGCGGTACAA
CAGCGAAGGTCGGCGCCGAAAGCAGCGGCAGTGGGAAGGGCAAAGGTACC
GCCGGGGTGGATGCCGCTGAAGGCGTTGCCGGGGTGAATGCCGCTGAAGG
TGTTGGTGCTGGCGTTGCCGCTGCGGTTGGTGGAGGGATTGATTCGCCGG
GGACAGGGGACGCTGCTGCGAGGATTAAGGCTGCGATTGAAGCGGCTGTT
GCGGGTAGCAGTGGCGGCGGCGGCGGCGGCGGTGGCAGCGGCGGCATCAG
CAGTAGCGGCGGTGGCGGAGGCGTCCCCGAGAGGTACAGCTGGGTGCCCT
CCTTGCGTGGAAGCAAGCCGTCGAGGGAATGCATCCGGCGAGTGAGGAAC
GACATACGCACTGTCATGAGGGACCCCGTGCCCGGGCTTTTCGTCTACCC
CGACGAAGACCTGGTGACCGTCGTCCATGCCCTCGTCACGGGGCCGTTCG
ATACGCCCTACGAAGGAGGGTTCTACTACTTCGTGTTGCACTGCCCCGAC
GACTACCCACACAGCCCGCCGCGGGTTAGGCTCATGACGACGGGGGGGGG
CACCGTGAGGTTCAACCCGAACCTGTACGCCAGCGGGAAGGTCTGCCTCA
GTATTCTCGGCACGTGGAACGGGCCGCGCTGGAGCCCCGTGCAATCGGTG
TCGTCGGTGCTGTTATCCATACAGAGCCTCATGAACGAGAACCCGTATCA
CAACGAACCAGGGTTTGAGGTGGCGTCCAACCCGCAAGACGTGCGGGACT
ACAACGACTGCATCACGCACGAGAACTTGCGCGTGGCCGTCTGTTCGATG
GTGGATGACTCAAGCCTGTGGAACAGTATGCCGAGCTGCTTCCAGGCGCT
CACCCGCGACCTGTTCCTGTCCTTCGTGCCCCGCTACCAACTCGTTTGCG
AGCAAAACGTGCATAGGGACGGGGAAAAGCTGGCCGATCCTTTCGGACAG
AACAATGGGACCTTCAGGTACGCCTCCATCGCTCGATCGATCAAGCGCAT
CGCCGCCAATCTGGAGGCGGAATCTGCCGGGGATGAGATTGATTCGTCCC
CCCCCGACCGCGAAGGAGGTACGGCAAGATCCGTTGATGTTACCCCTACC
GCTACTGGTACTGCTACTGCTACTGCTGCAGCAAGTGGTGGTAGCGGTAG
TGGTGGTGGTGGTGGTGCGGAAACCGGGGCTGGTGTGGTTTCATCCCCGG
GGGGCGCGAAAGGAAACGAACGCGGTTCTTCAGGGATGGGACGGATCGAA
AAAGGGGGGGGCACTCGCAATCGCAACGGCAATGGCGCCAGGAGCCCGTC
CAGTGCCTTCCGATAG
back to top