mRNA_P-littoralis_Contig707.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig707.15.1
Unique NamemRNA_P-littoralis_Contig707.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.200e-10
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 3
Query:  282 SKGGEDTEPDRQGEGDT-------------------RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            +KGGE  +   +GEGD+                   RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL K
Sbjct:  304 NKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAK 377          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.280e-10
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 3
Query:  282 SKGGEDTEPDRQGEGDT-------------------RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            +KGGE  +   +GEGD+                   RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL K
Sbjct:  380 NKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAK 453          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.580e-10
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 3
Query:  282 SKGGEDTEPDRQGEGDT-------------------RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            +KGGE  +   +GEGD+                   RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL K
Sbjct:  497 NKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAK 570          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.870e-10
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 3
Query:  282 SKGGEDTEPDRQGEGDT-------------------RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            +KGGE  +   +GEGD+                   RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL K
Sbjct:  945 NKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAK 1018          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.290e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 3
Query:  321 EGDTRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            +G +RRCC R ++S + AF+EQ NRVEE+FEAAGH CIFL K
Sbjct:  389 DGTSRRCCCRRIISEVKAFQEQMNRVEELFEAAGHVCIFLAK 430          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A6H5KKI5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.070e-8
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 3
Query:  288 GGEDTEPDRQGE----GDTRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            GGED +    G     G  RRCC+  VLS L AF+E+ N VE +F+A GH CIFLPK
Sbjct:   55 GGEDGDSSGSGAAGEAGKRRRCCVVRVLSELKAFREELNMVENLFKAHGHLCIFLPK 111          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A4Y9Z9D6_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9Z9D6_9AGAM)

HSP 1 Score: 58.5 bits (140), Expect = 3.720e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 3
Query:  339 CCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            CC R +L + P FKEQK+ V+EV EAAGH CIFLPK
Sbjct:  793 CCARRILESQPDFKEQKSLVQEVIEAAGHLCIFLPK 828          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A0C3GHR2_PILCF (Uncharacterized protein (Fragment) n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3GHR2_PILCF)

HSP 1 Score: 56.2 bits (134), Expect = 7.070e-7
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  339 CCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            CC R +L   P F+EQK+ V+EV EAAGH CIFLPK
Sbjct:  111 CCARQLLGQQPDFREQKSLVQEVIEAAGHLCIFLPK 146          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A067NWE2_PLEOS (Uncharacterized protein (Fragment) n=1 Tax=Pleurotus ostreatus PC15 TaxID=1137138 RepID=A0A067NWE2_PLEOS)

HSP 1 Score: 52.8 bits (125), Expect = 1.070e-6
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  339 CCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            CC + +L   P F  QK+ V+EV EAAGH CIFLPK
Sbjct:   14 CCAKHILDLQPDFMAQKSLVQEVIEAAGHHCIFLPK 49          
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Match: A0A8H6TIZ4_9AGAR (Uncharacterized protein n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6TIZ4_9AGAR)

HSP 1 Score: 56.6 bits (135), Expect = 1.610e-6
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  339 CCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPK 446
            CC R +L   P FKEQK+ V+EV EAAGH CIFLPK
Sbjct:  413 CCARRILDLQPDFKEQKSLVQEVIEAAGHICIFLPK 448          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig707.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K7K1_9PHAE5.200e-1045.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE5.280e-1045.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE5.580e-1045.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE5.870e-1045.95Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB3_9PHAE3.290e-964.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKI5_9PHAE5.070e-852.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A4Y9Z9D6_9AGAM3.720e-766.67Uncharacterized protein (Fragment) n=1 Tax=Dentipe... [more]
A0A0C3GHR2_PILCF7.070e-763.89Uncharacterized protein (Fragment) n=1 Tax=Piloder... [more]
A0A067NWE2_PLEOS1.070e-658.33Uncharacterized protein (Fragment) n=1 Tax=Pleurot... [more]
A0A8H6TIZ4_9AGAR1.610e-666.67Uncharacterized protein n=1 Tax=Mycena kentingensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig707contigP-littoralis_Contig707:73506..73953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size448
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791475.3214352-CDS-P-littoralis_Contig707:73505..739521680791475.3214352-CDS-P-littoralis_Contig707:73505..73952Pylaiella littoralis U1_48CDSP-littoralis_Contig707 73506..73952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig707.15.1prot_P-littoralis_Contig707.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig707 73506..73952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig707.15.1

>prot_P-littoralis_Contig707.15.1 ID=prot_P-littoralis_Contig707.15.1|Name=mRNA_P-littoralis_Contig707.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
PAANKNPAPATRQTTSSKPAPRYFEQPKRRPTGLPGGSGRPTRRPESWTK
ETLPNRGKKRDRQGWMARKEAKRKENKRAARVAREAHRKKVYLEAKGVRI
RNLIGKGRVILDAVASGSYSAICRHSRNRRIAWRRFSRQPDIGVSSSQS
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mRNA from alignment at P-littoralis_Contig707:73506..73953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig707.15.1 ID=mRNA_P-littoralis_Contig707.15.1|Name=mRNA_P-littoralis_Contig707.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=448bp|location=Sequence derived from alignment at P-littoralis_Contig707:73506..73953+ (Pylaiella littoralis U1_48)
CCAGCAGCGAACAAGAACCCCGCTCCTGCAACACGTCAGACCACCTCGTC GAAGCCTGCCCCACGCTACTTTGAGCAACCCAAACGTAGACCCACAGGTC TCCCAGGGGGCTCGGGGCGACCAACAAGGAGACCTGAGAGCTGGACCAAA GAGACTTTACCTAATCGTGGGAAGAAGAGAGACCGGCAAGGGTGGATGGC ACGCAAAGAAGCGAAGCGGAAAGAGAACAAGAGGGCTGCGCGTGTGGCTC GAGAGGCACACCGGAAGAAAGTGTACCTCGAAGCAAAGGGGGTGAGGATA CGGAACCTGATCGGCAAGGGGAGGGTGATACTCGACGCTGTTGCCTCCGG TTCGTACTCAGCAATCTGCCGGCATTCAAGGAACAGAAGAATCGCGTGGA GGAGGTTTTCGAGGCAGCCGGACATCGGTGTATCTTCCTCCCAAAGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig707:73506..73953+

>mRNA_P-littoralis_Contig707.15.1 ID=mRNA_P-littoralis_Contig707.15.1|Name=mRNA_P-littoralis_Contig707.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig707:73506..73953+ (Pylaiella littoralis U1_48)
CCAGCAGCGAACAAGAACCCCGCTCCTGCAACACGTCAGACCACCTCGTC
GAAGCCTGCCCCACGCTACTTTGAGCAACCCAAACGTAGACCCACAGGTC
TCCCAGGGGGCTCGGGGCGACCAACAAGGAGACCTGAGAGCTGGACCAAA
GAGACTTTACCTAATCGTGGGAAGAAGAGAGACCGGCAAGGGTGGATGGC
ACGCAAAGAAGCGAAGCGGAAAGAGAACAAGAGGGCTGCGCGTGTGGCTC
GAGAGGCACACCGGAAGAAAGTGTACCTCGAAGCAAAGGGGGTGAGGATA
CGGAACCTGATCGGCAAGGGGAGGGTGATACTCGACGCTGTTGCCTCCGG
TTCGTACTCAGCAATCTGCCGGCATTCAAGGAACAGAAGAATCGCGTGGA
GGAGGTTTTCGAGGCAGCCGGACATCGGTGTATCTTCCTCCCAAAGT
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