mRNA_P-littoralis_Contig705.1.4 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig705.1.4 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI) HSP 1 Score: 1399 bits (3622), Expect = 0.000e+0 Identity = 1066/1709 (62.38%), Postives = 1165/1709 (68.17%), Query Frame = 1
Query: 2887 LVEALRWRAACLRVTAPAAGEEGAGTVAALLAA-----------GDVLSAWSKDQDGANPTGGAAAGATPA---------------RELVAQTVAAGVRALGWHSWRVLAAGAAFVAPPATGTASPQTHKPTLSEGRALLSAVVLPGNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASAEFAALRAAVAAKDAAVA------------AGAGRCRTVFPAPPAMTWKEVEAALAAGSSREGQERLEWDAWRQSVSGLVEDLDRVLGGLVGAAPSLRSALESHLERRITAGRWLVVAGEVLFPPASRVAEKRLPRLDFVEDLIVTPPLSSSSAMSPYEPGDDALP---SPAGDGADGAAAAAAIQQQSADVVARVLACLKGLHADGLSWLEEARAALAGVGXXXXXXXXXXXXXXXXXXSAEAIAGLLARGILRAVQFPEEELLGEALKAQRQWNPKVLAALAVPLARTGGAGGDNGAWLTSARRLLEQAPPTLPSGSCYLSLLRWTVAVGETAEVMGAATSGGSLSFNESRPALTDMEPLAERGRALLLNGTGIATLLSAVGIAPPAGVMPPLSPASPTAGPLRLRLSDGPLSALSTIETVTRGVDACRQWVAGANALVSGGG-----LDGASSIRLVQELQANRQLPYAVDGGG-GGGLRATLAHELSLKAPEHPELAHHLGS-VGGFGA-ANGIGIDEDD--GMTGVIDIGDAGWGSNSELLDGSSSAAMMAAIDVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARAVGLQTASVARAVPPPLFTNSAAPTTRGSRNQRTSPFNLKSCSSCKKDRIPAIKCRVDCGPDGQQPGSPQNAATAAAAASVRDAVLAYKAAAAGSGAGP----RVPVVESASDLLERMLGSAAPPPLPVAPVARAPIPAPRVAPGAPVVGGLGLKRTRCLASGCTTPVDRNKAFCSNDCVVVAQKQVVHALMDYHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPK----WTAEDEQSFAKGLEAVRARGAQTAGQRFRHKVMDRFRELFAEGMAELGVESADATVLSGVLAWDLERELNAFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLTGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHMRQEDEGNEIVYKDGALQKIDKVKSDAKKQV*GGGGKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKHRRGSSDGGGVTVKAEGGVKRSNRGEGAGDSXXXXXXXXXXXGRGAXXXXAGGGVKRSELLKRRXXXXXXXXXXXXXXXGSAAKRMKRLLAVGSPIIADVPKLEFPSAPLPXXXXXXXXXXXXPPGPGDDYSDDPDGELNAMDVGSXXXXXXXXGGNKSGGEKXXXGGADTDG-------------------FSSPGAAGNNRGKDAGGGLSESRFAVDNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRPVTPPPEVEGMTRVAPKIDKKSGRAAKSENFLINEPGREPFYVHAYHVGNPAQYIRQRTLLPRILDVDGRVSVANLNGTMKSRAEGSVRVLVLRPGGGGPNNPNVLSRFCQDFATYKNQGRAGYCFKQFDKKHVEFLYLVPPMLARQVPLLAQNPAAQGHLVCLVITVASA 7779
L EALRWRAACL+ GD LSAWSK D T G P RELVAQ VAAGVR+LGWHSWRVLAA AAF A P + + P KPTL++G ALL AV+ PGN + AASAEFAALR AVAAKDAA +G G FPAPP+ TWKE A+AAG + EW+ WR+S SGLVE ++ VL G+V AAPSLRSALE L+ RI AGRWLV +G VLFP R+ P LD E L+ TPP S SA +PY+PGDDALP PA DGA AAAA Q+QSA V A VLA L+ L + SWL EAR LAG G XXXXXXX SA+A+ LLAR ++RA+Q PEE+LL +AL++ QW+PKVLA L VP+A GG D+G WL AR LL QAP TLP GS +L+LLRWT+AVGETA+VM AAT+GG++SFNESRPA TDMEPLAERG+ LLL GTG+ATLLSAVGIAPPAGV+P L+ A P PL LRL DGPL+ALST+E VTRGVDACRQWVAGA AL S GG LDGASS RLVQELQANRQLPYAVDG G GGGLRATLAHELSLKAPEHPELAHHLGS VG FG ANGI DEDD GM G ID+ D GW S+S+L + MAAIDV XXXXXXX SARA GLQTASVARAVPPPLFTN AAPTTRGSRNQRTSPFNLK+CS+CKK RI VDCGPDG++PGSP NA TAAAAA+VRDA R P ESAS LL+RMLG+AA PP P APV +A +PAPRVAPGAP +GG GLKRTR L +GC PV R+ AFCS+DCVV AQ+Q VHAL+ YH+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX TA+DEQ+FAKGLEAVRAR AQTAGQRFRHKVMDRFRELFA+GMAELGV++ADA VL G+LAWDLE ELNAFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLL+GGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGH+RQEDEGNEIVYKDGALQKIDKVK++A KQ+ GG K+ XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX XXXX RSELLKRR XXXXXXXXGSAAKRMKRLLAVGSPII DVPKLEFPSAPLPXXXXXXXXXXXXPPGPGDD D DG L DVG G +S G++ A SSP A+ N D GLSE RF+ N+ XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX PVTPPPEVEGMTRVAPK K+GRAAKSENF+INEPGREPFYVHA+H G P + + LPR LDVDGRVS+ NLNGTMKSRA GS+RVLVLRPGGGGP+NPNVL+RFCQ+FA YKNQGRAGYCFKQFDKKHVEFLYLVPP LA QVPLLAQNPAAQGHLVCLVITVASA
Sbjct: 2 LTEALRWRAACLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDNLSAWSKSGD----TTGQEKKGMPTXXXXXXXXXXXXGSGRELVAQIVAAGVRSLGWHSWRVLAARAAFNALPGSNPSPPA--KPTLADGHALLDAVISPGNGSGGSGAKPVAVLEGAALATA---------AASAEFAALREAVAAKDAAATMAWKWRDAATSGSGGGGWGRAFPAPPSTTWKEA-VAVAAGGGQRRHVVAEWETWRKSASGLVEGMEGVLAGVVDAAPSLRSALEVQLQARIEAGRWLVASGGVLFPTGGRI-----PTLDSTETLVQTPPPPSFSATAPYKPGDDALPVGDDPASDGAS--VAAAANQRQSAAVFADVLAGLQELRGEASSWLTEARGLLAGAGGXXXXXXXAAVAMTDG--SAKAVEALLARDVVRAMQLPEEKLLRDALQSHGQWDPKVLAILTVPVAAGGGV--DSGGWLAPARTLLAQAPTTLPPGSSHLALLRWTIAVGETAQVMLAATTGGAMSFNESRPAFTDMEPLAERGKTLLLGGTGVATLLSAVGIAPPAGVVPLLAAAPPA--PLSLRLGDGPLTALSTVEAVTRGVDACRQWVAGATALASPGGXXXXXLDGASSARLVQELQANRQLPYAVDGAGFGGGLRATLAHELSLKAPEHPELAHHLGSSVGSFGGVANGIVDDEDDAEGMAGAIDMSDVGWASSSDL------DSAMAAIDV--VGAATTTEAPPPAPAPAVYPLAREQHRHSGATPAGSRGXXXXXXXRNGGTISARAAGLQTASVARAVPPPLFTNPAAPTTRGSRNQRTSPFNLKACSACKKGRI-----SVDCGPDGERPGSPHNARTAAAAAAVRDAAXXXXXXXXXXXXXXXXXXRSPAAESASSLLDRMLGTAALPPPPPAPVVKAAVPAPRVAPGAPAIGGAGLKRTRKLTAGCDKPVGRDVAFCSDDCVVSAQRQAVHALVAYHQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGANGEEGVXXXXXXXXXXXXXXXXXXSSGGCTAKDEQAFAKGLEAVRARSAQTAGQRFRHKVMDRFRELFADGMAELGVDAADAAVLCGMLAWDLEHELNAFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLSGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHLRQEDEGNEIVYKDGALQKIDKVKAEATKQMLEGGSKSKGGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXXXXXXXXXRSELLKRRLSASSDLXXXXXXXXGSAAKRMKRLLAVGSPIIGDVPKLEFPSAPLPXXXXXXXXXXXXPPGPGDDSDDPDDGGLRTTDVGRGIGGGD---GVESDGDEGSGNTAKRKXXXXXXXXXXXXXXXXXLPRLSSPPAS-PNADIDMDNGLSEPRFSATNEDXXXXXXXXXXXXXXXXXXXXXXXAKEVKPSRHSAXXXXXXXXXXXX---PVTPPPEVEGMTRVAPKPG-KAGRAAKSENFVINEPGREPFYVHAFHGGGPEHCVDLQGRLPRNLDVDGRVSMTNLNGTMKSRAAGSIRVLVLRPGGGGPHNPNVLNRFCQEFAAYKNQGRAGYCFKQFDKKHVEFLYLVPPALAPQVPLLAQNPAAQGHLVCLVITVASA 1642
BLAST of mRNA_P-littoralis_Contig705.1.4 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI) HSP 1 Score: 882 bits (2279), Expect = 1.220e-290 Identity = 568/755 (75.23%), Postives = 605/755 (80.13%), Query Frame = 1
Query: 142 LPSSDEDFWEAVAAQVAREGSSATPAWRQVGATERPSPSSGDTTGTSGRSGTTRGKAKGXXXXXXXXXXXXQETAGARCALCEDVSEGRWVTRCKGTGXXXXXXXTRQQLACPIWVHPACAWQNEGYAMRSIAGSSRLTEAEDGQKKRRLPTVFFACPQHDKPATYCSCKREEGEDEDGAEDYIECESCSEWYHFSCEGLXXXXXXXXXXXXXCRQLAAKGQKVPAQERRRNKAKTNEYLCEMLANKVMQIQQWVKEVKVLAATDTAXXXXXXXXXXXXXXXXXXXXXXXXXASLKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQS---KVVHGMEGVYAEALGLLEAVAEESDTVEAAVDAWFDEHPEGYYKKSDGGARLGYWKTSAAPLEDETRRLEALVASARSARAGPPAAVAAAEDALGAARWALRAVGLFTAGAGSXXXXGRSPAFAEVSALLDDAEEGMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVASEWEAWEGRALKCAASLDAIPLDDLVET----AGTPAPGET-QSDKEALALLQEAEAFSHGVKTSAKDALTRLLGRRSWAQRAAGVISCGAKGIARPSVSLTKSLMAEAGKLGLLRAGEAGVSPLVAKVRALADGEGPVMRARELLKA--DGGLSEASGDRELCEGEGVLSSLRATPVVYPEEEAL 2376
L SSDEDFW AVAAQVA+EGSS TPAWRQVG SPSSGD+ GR+GT RGKAKG E AG CALCED SEGRWVTRCKG+G TRQQ C IWVHPACAWQNEGYAMRSIAGSSRLT DG+K RRLPTVFFACP HDKPATYCSCKREEGEDEDG EDYIECESC+EWYHFSCEGL CRQLAAKGQKVPAQERRRNKAKTNEYL EMLANKVMQIQQWVKEVKVLAAT+TAXXXXXXXXXXXXXXXXX AS+K+L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KVVHGM GVYAEA LLE+VAEESD E AVD WFDEHPE YYKKSDGGARLGYWKTS +PLE E +LE LVASARSARAGPPAAVAAAEDAL AARW L+AV L T GAG G PAF+EVSALLD+A E MATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVA+EWEAWE RAL+CAA+L+A+PL+DL T + TP PGE ++D++A LLQEA AFSHG+KTSAKDALTR LGR+ WAQRA VISC A GIARPSV+LT+SLM EAGKLGLLRA VSPLV KV+ALA+GEGP RAR+LLK +GGLSEAS D ELC EGVL +LRATPVVYPEEE++
Sbjct: 2 LTSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDS--GHGRAGT-RGKAKGPAAAASAAEV---EAAGVCCALCEDKSEGRWVTRCKGSGGGTG---TRQQQTCNIWVHPACAWQNEGYAMRSIAGSSRLTA--DGEK-RRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTAXXXXXXXXXXXXXXXXXARY-----ASVKDLLARREELEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGXAGAAGL-PAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTP-PGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATRARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEESV 737
BLAST of mRNA_P-littoralis_Contig705.1.4 vs. uniprot
Match: A0A6H5KV96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV96_9PHAE) HSP 1 Score: 223 bits (567), Expect = 1.530e-61 Identity = 206/276 (74.64%), Postives = 214/276 (77.54%), Query Frame = 1
Query: 886 MQIQQWVKEVKVLAATDTAXXXXXXXXXXXXXXXXXXXXXXXXXASLKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQS--KVVHGMEGVYAEALGLLEAVAEESDTVEAAVDAWFDEHPEGYYKKSDGGARLGYWKTSAAPLEDETRRLEALVASARSARAGPPAAVAAAEDALGAARWALRAVGLFTAGAGSXXXXGRS--------PAFAEVSALLDDAEEGMATSADRRGRANTAWQHVNDIR 1683
MQIQQWVKEVKVLAAT+TA XXXXXXXXXXXXXXXXX ASLKEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + KVVHGM GVYAEA LLE+VAEESD E AVD WFDEHPE YYKKSDGGARLGYWKTS LE E +LE LVA+ARSARAGPPAAVAAAEDAL AARW L+AV L T GAG X PAF+EVSALLD+A E MATSADRRGRANTAWQHVNDIR
Sbjct: 1 MQIQQWVKEVKVLAATNTAGAXXXXXXXXXXXXXXXXXY-----ASLKELLARREELEAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVGTLEAEVGQLEKLVATARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGGAPXXXXXXXXXXGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig705.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig705.1.4 >prot_P-littoralis_Contig705.1.4 ID=prot_P-littoralis_Contig705.1.4|Name=mRNA_P-littoralis_Contig705.1.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2095bp MASDTAHQQLPSSDEDFWEAVAAQVAREGSSATPAWRQVGATERPSPSSGback to top mRNA from alignment at P-littoralis_Contig705:3647..33275+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig705.1.4 ID=mRNA_P-littoralis_Contig705.1.4|Name=mRNA_P-littoralis_Contig705.1.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=29629bp|location=Sequence derived from alignment at P-littoralis_Contig705:3647..33275+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig705:3647..33275+ >mRNA_P-littoralis_Contig705.1.4 ID=mRNA_P-littoralis_Contig705.1.4|Name=mRNA_P-littoralis_Contig705.1.4|organism=Pylaiella littoralis U1_48|type=CDS|length=6285bp|location=Sequence derived from alignment at P-littoralis_Contig705:3647..33275+ (Pylaiella littoralis U1_48)back to top |