mRNA_P-littoralis_Contig704.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig704.12.1
Unique NamemRNA_P-littoralis_Contig704.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig704.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig704contigP-littoralis_Contig704:48834..50275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size433
Hectar predicted targeting categoryother localisation
Exons4
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791472.057254-CDS-P-littoralis_Contig704:48833..489391680791472.057254-CDS-P-littoralis_Contig704:48833..48939Pylaiella littoralis U1_48CDSP-littoralis_Contig704 48834..48939 +
1680791472.0708318-CDS-P-littoralis_Contig704:49147..491881680791472.0708318-CDS-P-littoralis_Contig704:49147..49188Pylaiella littoralis U1_48CDSP-littoralis_Contig704 49148..49188 +
1680791472.0814261-CDS-P-littoralis_Contig704:49448..495381680791472.0814261-CDS-P-littoralis_Contig704:49448..49538Pylaiella littoralis U1_48CDSP-littoralis_Contig704 49449..49538 +
1680791472.0922296-CDS-P-littoralis_Contig704:50081..502731680791472.0922296-CDS-P-littoralis_Contig704:50081..50273Pylaiella littoralis U1_48CDSP-littoralis_Contig704 50082..50273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig704.12.1prot_P-littoralis_Contig704.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig704 48834..50273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig704.12.1

>prot_P-littoralis_Contig704.12.1 ID=prot_P-littoralis_Contig704.12.1|Name=mRNA_P-littoralis_Contig704.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
EKVAVFAETPPGGLPPGAYLCRRAYNLVEKEIVSMGNMPSASSPTEPGEE
EISIKADKRAVLPARIHATGEKLLPDSSELQAGRLYAAQQVVDGKPGHVS
DSLAQYLLAAQRLTVYSARQLVWVKPEGVGPELSPSRGFMNGW
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mRNA from alignment at P-littoralis_Contig704:48834..50275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig704.12.1 ID=mRNA_P-littoralis_Contig704.12.1|Name=mRNA_P-littoralis_Contig704.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1442bp|location=Sequence derived from alignment at P-littoralis_Contig704:48834..50275+ (Pylaiella littoralis U1_48)
GAAAAGGTGGCCGTATTCGCCGAGACGCCACCGGGCGGATTGCCTCCGGG
CGCGTACCTCTGCCGTCGGGCCTACAACCTCGTGGAGAAGGAGATAGTCT
CGATGGGTGCGTTCGAGTCGGGTAAAGTGTGCTTCTGTCTCCGCTCTAGT
GTTTGTTTGGGGTGTTTTTTGTTCGATGCTGCTGCTGCTGCTGCTGTGGC
TGGTCAGGTAGCTGCTTTGCTGACGCCAGAAGACCGATCAAATCTCTCCT
CGGCACTCATGATTCTACCTCCGACCCGTCTGTCTTTGTGTATTTCCCGC
CCGCCCTGATTTAGGCAACATGCCGTCCGCCTCGTCTCCCACCGAGCCCG
GAGAGGTGAGCGGCAGTCACGTGCGGCAGCGGTCTAGCGAAGTTTGGCAG
CCCTCTACGCTCGGCTGGCACTTTTGCTGTAACTGCTAATTCGAATTTCT
CTCTGTTGGCACTCTATTAAAAGCGTGTTGGAATGTGAAGAACGTTTTGT
TGGAGCAGTGATGCTATATATTCCAAGTACGATATTCGGCGTGTACGAGT
TTCGCCTGCTGCCCAACTGCTGTCTATGCACCACTTCTTGTTTTTTTCCG
CTACGATGACGCCAGGAGGAAATTAGCATTAAAGCTGACAAGAGGGCCGT
TCTTCCGGCACGGATCCATGCTACGGGCGAGAAACTACTGCCAGACAGCA
GTGAAGTGAGTTGGGAGTTGATCATGATATTTCGTTGCTTGTTCCCCGAC
TGCTCGGGAAGGTGTGCTTCTGCTCAGTAGTGGTTTGGTTTCAAGCGCAC
CTTTCTCTCAAGCTTTCGCGAGCATAATGGTCATCAGAGGCGAGGCAGTG
ATGGTGGTCTGTGGCGCACGTGGCACTCACGTGCGGCGTCTTTTGCAGCG
CAAACGAACGATGCGTGGTGTTGATCCTGGCCTGCTGTCCGGCACTTGTT
GCTTGACCTGAAACTTGCTAATTCCCTTCCGTTCCTGTGTCACCACGAAG
CAATCAATTCCCATCCCATCCCATCCCGTCAATGTGCTGCCTTTCCCCCT
TCCTTCCCACGGTAAATGATCGAACAGGAACGATACTTCTTAGCCCATCC
CTCCGCAAGACCATAAATTTCTTGCGCCTGCTGCGGGCTGAGTGTCCCCA
GATACCATAGGACGCAGCAAAGTCTTGGATGTTCCAGCCACGGCACCTCC
AACCCTCCCCCCCCCGTATGTTATTCGTCGCTTGCCGCGCGATCAAAGCT
CCAGGCGGGCAGGCTTTACGCCGCCCAACAAGTGGTGGACGGGAAGCCAG
GCCACGTGTCTGACAGCCTGGCACAGTATCTCCTAGCGGCCCAGAGACTT
ACTGTTTATTCCGCGAGACAGCTCGTGTGGGTGAAGCCCGAGGGTGTTGG
GCCGGAGCTTTCTCCTTCGAGGGGTTTTATGAACGGCTGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig704:48834..50275+

>mRNA_P-littoralis_Contig704.12.1 ID=mRNA_P-littoralis_Contig704.12.1|Name=mRNA_P-littoralis_Contig704.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig704:48834..50275+ (Pylaiella littoralis U1_48)
GAAAAGGTGGCCGTATTCGCCGAGACGCCACCGGGCGGATTGCCTCCGGG
CGCGTACCTCTGCCGTCGGGCCTACAACCTCGTGGAGAAGGAGATAGTCT
CGATGGGCAACATGCCGTCCGCCTCGTCTCCCACCGAGCCCGGAGAGGAG
GAAATTAGCATTAAAGCTGACAAGAGGGCCGTTCTTCCGGCACGGATCCA
TGCTACGGGCGAGAAACTACTGCCAGACAGCAGTGAACTCCAGGCGGGCA
GGCTTTACGCCGCCCAACAAGTGGTGGACGGGAAGCCAGGCCACGTGTCT
GACAGCCTGGCACAGTATCTCCTAGCGGCCCAGAGACTTACTGTTTATTC
CGCGAGACAGCTCGTGTGGGTGAAGCCCGAGGGTGTTGGGCCGGAGCTTT
CTCCTTCGAGGGGTTTTATGAACGGCTGG
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