mRNA_P-littoralis_Contig704.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig704.10.1
Unique NamemRNA_P-littoralis_Contig704.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig704.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig704contigP-littoralis_Contig704:38531..45292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size310
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791471.9005487-CDS-P-littoralis_Contig704:38530..387591680791471.9005487-CDS-P-littoralis_Contig704:38530..38759Pylaiella littoralis U1_48CDSP-littoralis_Contig704 38531..38759 +
1680791471.9189684-CDS-P-littoralis_Contig704:45211..452431680791471.9189684-CDS-P-littoralis_Contig704:45211..45243Pylaiella littoralis U1_48CDSP-littoralis_Contig704 45212..45243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791471.9313009-UTR-P-littoralis_Contig704:45243..452921680791471.9313009-UTR-P-littoralis_Contig704:45243..45292Pylaiella littoralis U1_48UTRP-littoralis_Contig704 45244..45292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig704.10.1prot_P-littoralis_Contig704.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig704 38531..45243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig704.10.1

>prot_P-littoralis_Contig704.10.1 ID=prot_P-littoralis_Contig704.10.1|Name=mRNA_P-littoralis_Contig704.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MGVTLKHHEFGLYPIPSVCSLSPEETEKGVPLKKERVPEKLTTGETAAAF
PVLSCGCTVEWRHLKTTAVRRPHHAPGVTSPGLPLL*
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mRNA from alignment at P-littoralis_Contig704:38531..45292+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig704.10.1 ID=mRNA_P-littoralis_Contig704.10.1|Name=mRNA_P-littoralis_Contig704.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6762bp|location=Sequence derived from alignment at P-littoralis_Contig704:38531..45292+ (Pylaiella littoralis U1_48)
ATGGGTGTAACTCTCAAACACCACGAATTTGGGTTATACCCCATACCGTC
TGTCTGTAGTCTCTCTCCCGAGGAGACAGAAAAAGGAGTGCCTCTGAAGA
AAGAGAGGGTACCTGAAAAGCTTACCACCGGCGAGACTGCTGCTGCGTTT
CCAGTACTGAGCTGTGGCTGTACTGTCGAATGGCGACACTTGAAGACGAC
CGCCGTACGGAGGCCACATCATGCCCCAGGCGAGTAATTTACCAGCGAGT
TTATCAGAGAAAGCGCGAGCGTTTAATTTATGCATTCTGTATACCAGATG
TTTTCGAATGGCCAGCGCGAGAAAATCAGAGTTGGCCGATGTGTTCGTTG
ATTCTGATTCGTCGTCGGGTATGATGTGCTGCACATGGTCTCTAAACGTC
CTTGTTGCTGTCGACATTTTTGCCATCGATGGCCCAGATCATTGCTTGTT
ACGTGTGCTGTGTGCTCGTTTCCCGATGGGTGAGAAGGACAAGCATAGCA
GTTGCAGCCTAACACTCTGTAGAGTACAGTACTTACGCATTTGAAATTTG
GGACTCACTTTTAGGAGAAGAACCCCAGAGTCCCAAATTTTCACACCCCT
TGCGAACTTACCAAGCTCTCTCGTTTCTTTTTTTTATCTTCAGGACAAAA
TAAACAGCAGCAGCGCAGACAGAGGCCAGCAACAGGCACAGCCCGCTGCC
AGCAGCAGCCTCCTCCTGTCCCCTCCTGTATTTTCCTCTCGTCATCATAC
ATGAAACAAGAAAAAAACGATCACGCGAGCCAGAGGCTCACGTCCCTGCA
CAGGGTTGCTGCTGCTGTAGATGCACGAGGCTATTATCAGCACATGAAGT
TATCAAAGGCCTCTCCTCTCGCATTTAATCCCCCCCACAACAAAAGTACT
CGGAGTAAGTAACAATGAACGGCGCCATGCTCGCGTCTAAACAGCCGCAT
TCTTTGCTTGCTTTGTAAAATAGCACGACTTCCGTTGGTGTCATGCCGCC
GCAATGGCGTTCGTTTGAGTAACAGCTCGTCGCGCCCAACAGAAACGGAG
CCAGCTTCGGTGCCCAACATGCGGGCTCCACTTGCCTGAAGAACACGAGA
GAACACGAGAGGTGGCGGTGTCCGTATGACTTGACCAATCGGTACGACTC
GTGCAGTCTACGGATGGACTGAGGCCCTGTCTAATCATTCCGGATTTTTG
CCGGGAAACAGAAAACCATTCCCGGGAAACATGAACTGAGTTTCGCTCTG
TTCTAAACGATTGGGCGAGTATTTTTTTCAAAATGCCTTTTCTCTGTTTT
TTATCCTGAAGCCCGAGCTTCTCCCCGCCCACAGCAGTCACGCCGCATCC
GTACTCTAGACGCCAAGCGAAGCATCCGAAGGCGCTTCCTCCCATCAGCC
ATGGCCTTAGGGCGACCCTGTGAACTCACTGTGTGGTTGTGTGGCCTGGG
GATGGCGTGCATACGATAGCTCGTGTGAACTGAGCACCTATGCAGGCGTG
CCCGAACTTGGAGGCACGTCTGCCCGAAATGCGGGTTCAAATTTCCGGGA
ACCCTGAAATGAGTATTTCGGGATTTTTTGGGCAGTGCTCATTTCAGGGA
AACCGAGAAGAACGCCTGCATATTGTCGGAGATTTTAGGTTTCCAGGAAT
GGTTCTCTGTTTCCCGGCAAAAATCCGCAATGATTAGACAGACCCTGACC
AATCTCTGCGACACACTAATCTGGTCAACCATTTCACTCACAAATTTGTG
AGATACCTCTATTTTATGGATTGAGCTCAAAGATTTGGGATCGGATCGGT
GGGTTTGTAGAAAAAAGTGTTGGAAGTCACAAATTTGTGAGTTCGCACAC
TCTCATTTTAGGAAACTACGGAGTACGAAAAAGTACTCCGGAGTACTACA
CAGGGTGCGCGTCCCGGTATAGCGACACCTACCGGTAGTGGTAGGCGGGA
AAGAGATCGATATTCAAGGAGGGCTCGCTATTCCTTCATAACGACAAGGT
CGCTAGTCTTCGATAGCGACTATGTCGCAAGTTCTCAACAACGACCTTGT
ACGTTCCTGGTAGCATATGTCGGTACTAGTCTTGAGAATGAGAGCCACAA
TTATGTGTGACGGAAAAAAGCAGCTCGTCACACAAACGAAGTACTGTACT
CCTCTTGCGAGGGTGATTTTATCACCGCTTTTCCAGAATCAATAATTGAG
ATACAATATAGTGTTTGCAAAAACAAATATTTGATCTCAAAAATCAGTTC
TGAGTTCCCCCGAGCGGCACCGTGACTGAGACGAAACATATACGAAGTAC
TTCGTACGAAGTATATGTTTCCAAATTTCGTTTATTTCTGGTAAAATATG
ATATTTGAGAAAAACATTTGAGCTGCCGGGTCAGGCCGTGTCGGCACTCA
AATGTGATTGGTCGGGTGAATCGGGAGCATCGGAACCTATCATATATCAC
AGTAAAGTATGCCCGCGGCTCGCGGTGGTCACCACCAACTGCTGTCGGTC
GATGATAACAGAGCACTGACCGAAGCAAGAGGCGTACAGGAGTGGTACTG
CATCATAGAGAGAGAGGTAGATGCTCGAATCATTCGGCGCCACGGCACAC
TTCACGCTGCGGAGGGTGTATGCATCGGGCTGTGCTGCTGCTGTGGCAGA
CGGTGGCCGTATTTCGTCGTATTTCCTTCGCCTGATCACGCACCAACGCC
CACACGCTGTTGCTGTCACAGAGCAACGCGCACGCAACACACGCTGCTGC
TGCTGGTTATGTAGGAGAGCCAACAAGTGGTGAACCTTCTAGCTGTCCTT
CGCCTGATCCTGCACCCTCCGCTACTCCAACAGTCGGAGCTGGCCGGAAG
ACTCTTGACTGTGTGCGTGTGTTGCTCTTTCCAAAGCAGGAGACAGAAGA
GCTCCGTCCCACGGCGGTGCCAGCAACAACACACAACACCACCCGACTTT
GCATACTGCTGCTGCTGTTGCTGCTATAGATAAGCCAACACAATGATGAG
TCTTGCGGCTTTACCTCGCCTTGTCCGTTACCCTCCAGTACAGCGGCAGC
CGGAAGCCTCATTTTGGTGCCGTGTTGGCTCATCTCCAGTAGCATGCCAT
TTTTGGGTGTATGTGTTGCTCTCCATGATACTGTTGTACAATCTATCTTG
ATTTATCTCTGCACAAAAAATGCACTCCGAATTACATGACTGGAAATAAA
CGAAGTCGCCCTCTGTGGTCCTCTTTAAGGGGCGTTTTAATCATGAGCTT
TCATGTCCAAATAAGTGACACAATTTTTTGTCACTTTATGTGACATGCGT
TTCGTCCATTGTAAACAGGCGGCGCAGACCTCAACATTTTTGACTTCTTT
TCTGGTGTTGTTTCTCCGCCTGTCCGCGTGGGTAATTTGCTTCATTTGCT
CACCGAGACATCACTTCCACACATCTGATGATATCTCGCCCGAAAAGGGA
TGAGACTCGGTGCCGAGTTCACCCCTAGAGAGGTGGGCTCCTTGGCCGTC
GGAAATGGCCAAGGTTTGAGGTCGTTGGGTGTCGTACGCAGCGAGGAAAG
AGATATCAAGTATCCTGCACCCCGGTTCCACTGCTGTGGAGAGCATATTT
GTTGACGTTTCGACCCCTTTTTCAGAGCAACACAACAGTTATCTTTTCCA
CTCCATGCTCGCCGAACAAAAGACGAGACTCCCTCAAAACTGCAGGGCGG
GCGATATATGCCTATCCCCTGTCAGGCTTGGCCAAGGTTTGGGGCTGTTG
GGTGTCAGGTCTCACGGGAAAAAGGGTTTTGTGATCACGTATCAAGCAGA
CTTCTCAGGCATGCCCCTGAAAAAAAGAGCGAAAATTCTACTCTCCGTCG
CCACAGCTGGCTGCTGCTGCTGTCGAGAATTCAGGGACGAAGCCGGGAGA
AACATAGCTTTCTGCTGTCGGTCGTGCCACAGCCACACCTTAGGCTGTCT
TTTGGGGTGAGCTACCACTGCTGGACCCTCTGCCAGCAGCGTCTCGGCCT
CGCTTGGGGATATCAAAGAAATGTCAAAGATAATGTAAAAAAATGTGAGC
CAAGTCGCTCACACTTTTGGGCTGCAGATCAGATCACACATTTTGAAAAA
AAGTCGACAAATGCCTGCATACATGTGTCGTCATGCTTGACATGTCGAAA
TATTTGACATAAAAAGTCAATGATTAAAACGACCCTACACCAAATGATCC
GTGTTCGTGTTGTGTTTTGTGTGGGTGATGATAAGGCGAACTGAGGGGTA
CCTAGCCTTTTCTGTATGAAGGGCCCCGAGCAAAGAAATATGTTTTGGCA
AACTAACATCCAAATATCGGTGAAACAGAATTATGATTCATCGCGCGTGC
TTTTTTTTTACGAAAGTGATTTTTGCATTTACAAATTTTCGTGTTCACAA
ACACTCTAATTTCGATTTCCGATTTTCGTTTTTCGATTGTTTTTGGTTCC
GATCACGGCAATAGGCGTTGCATAAAAAATCTAAAAGCGAAAGAACAACG
AGGAGGAGGAGGAACGGCCAGCAAGTCACAGGACAGATGGTCGTGAAATG
GATGTTCTGACGTTTTAAGACTAGTGCGGGAGCTACCGTGCCTCATAAGT
AGTTCACGATTGATTCTCGTTGGTTTTTGATCGATAACCGAACAACCCAA
CAAGAGATAATGTTTGTGTGATTTCGTGTTGCACATGCATACAATTACCC
TACCGGCAATCGAGCAGTCGTAAAAATGATGATAGGGCCACCTGCGTAAA
TATCGTAAAAGCCCTGCGAAACAAAAAAATGTACGTCACGCGAGTTGGCA
CCTTTGCAGAGTCACCCAGATGGCTCATAAATATCCAGGGATGAAGGTGG
GTTGGTGTACTATACATCTACACACCCCACTGTTGAAAAAAAAACTGGAT
CAACACAACAGCGGGAGATGTAGCAAGTTAACCCTTTGAACCCCCCAACC
CCGATTGGGGACAATTTGGGGACAGCTGGTTTTTTTTTTTGTGACTTTTG
TTTTGAAGGCGCCTTTCTACAGGTATTTTGGGTGTGGTTCCGTTCGCTCG
ATGGAATAATGTGTGTGGATCGACCAATCGTTGGCTGCCTCGGTGCCACA
TTTAGTTTGTAATTATTATTCTGGGAGAGCAAGCGTTCCCGACCGTTATG
GGTTTGTTGTGTGTTATTGTGTCTTCCCTCTACAGCGTAGACACAACTAA
CTGCGATCGTCTTGCATCACACACCATGCCGGCACCCCTCCCTGCCTTGC
ACACATTCACACAAACATAGTACATGATACATATGTTAGACTATACCGCT
GCGATGAAAAAAAAAAAAGCTGATTGACGATGACGTTCTGCTGCTGCTGC
ACTTAGAACACGTACATACACCCTGATTTCTGGGACTGACTGCTGCTGTG
CATGCTGCAGCAGCTGATTGATGTGTCGTGCGATTGGTTGGTGAGACACA
CACCACGCGCACGCGGGCTGACACTACAAACAGTCATATCGCGCCACGCA
CGTTTGAAAGCTCACAAATATACCCGACGATCACATGCCGACACCCTTCC
TTGCGTTGATCATGCAACACATATACTCCAATATGATATACTTCGAAGTA
TGTGTTTGTGATGGGACTGCTGTATCGGAGTGAAGCTGCTGCTGCTGCTG
CTGCTGATGATGATGATACTTGCTGTAGACCCTGAGTGAATGTCGTGCGC
GGGTATAACTTAGCGGAGTGGAACCCTACTGCTGTGTGGTTGTCGAGCGG
GGTACCCTGATCTGCCATGCTAAGTGGCGGTGTAGATGCTTGCGTGCTAC
TTGCATACAGCAGTATCCCTTTGTTCGAAGCAACATCCTGTAAAACTAAA
CAAACAACTTTTGTGTAGGTGACCCCCCCAAAAAAGTTTGGTATCGCTTT
AGAGTGGAACCTGTCCCCATTTTTTTCAGGGCAAATTGGGGACAGATTTC
TGTGTATAACCAAGTCACACTCTTTTCACAGGACAGAGCCAGCGAGACGT
CAGTCCTTTTTTTTTTTGAGACTGTCAACCATTCGCCAATCATCGGCGCA
CCGGAATCAGTTAATTTCTGGCTCCATGATTACTTTTTTCAGACCCCTGG
GGGGTCAAAGGGTTAACCTGTGGCCCAGCATTTGTTTTGTCTATGTAAAA
ATAATTCGAAGGAAAACCTGCAACTCCTGTGGAACAGGACAAAAAGTCAC
TGCCGTGAAAATCTGCGGTACAGCGACGCACCCTTTTTCGATGCAAGTGT
AGCCTGCCGTTGGTGTAAAACCACTGCTCTCTGTACTACCCTTGCCCCTC
CTGTGCTTTACAGATCCTCATGCTATCGCTGCGACTGAAAGGACGCCGAA
CAAATGCTGGTTTTGTCAGCAACATCCCTGTCCGCTATTCTCGGCTGTTG
CCCTCATAGACCCTGTCGTCACAGAGAGAATGCGGTATGCGATTGATGTA
GGCCGCAGGTGCCAGGGTGGGCCCGTCAAAATGGATTCTACGAGAAAGTG
AACGCGTCGCCATGTTCCCTTACCTAAAGGCCTGTTGTAGTCATTACTTC
AAGTATATGACAAAAGCTAATTCGCGCGCTCTCGCCAACGGTAATGAAGA
AACCGGACCAATGAAACGTATGTAAAACAAAACTGCACATATCACGAAAG
TTCACATGCTCTCTTGAATGCCGTTGTGCAGGTGTCACAAGTCCCGGCCT
GCCGCTTCTATAGCGTGCGCGGAGTGCTCTTTTGAAATTCTTCCTCCACT
TCACGCCCCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig704:38531..45292+

>mRNA_P-littoralis_Contig704.10.1 ID=mRNA_P-littoralis_Contig704.10.1|Name=mRNA_P-littoralis_Contig704.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig704:38531..45292+ (Pylaiella littoralis U1_48)
ATGGGTGTAACTCTCAAACACCACGAATTTGGGTTATACCCCATACCGTC
TGTCTGTAGTCTCTCTCCCGAGGAGACAGAAAAAGGAGTGCCTCTGAAGA
AAGAGAGGGTACCTGAAAAGCTTACCACCGGCGAGACTGCTGCTGCGTTT
CCAGTACTGAGCTGTGGCTGTACTGTCGAATGGCGACACTTGAAGACGAC
CGCCGTACGGAGGCCACATCATGCCCCAGGTGTCACAAGTCCCGGCCTGC
CGCTTCTATAG
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