mRNA_P-littoralis_Contig703.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig703.2.1
Unique NamemRNA_P-littoralis_Contig703.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig703.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig703contigP-littoralis_Contig703:32625..34272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size539
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791471.7122445-UTR-P-littoralis_Contig703:32624..327051680791471.7122445-UTR-P-littoralis_Contig703:32624..32705Pylaiella littoralis U1_48UTRP-littoralis_Contig703 32625..32705 +
1680791471.751966-UTR-P-littoralis_Contig703:34120..342721680791471.751966-UTR-P-littoralis_Contig703:34120..34272Pylaiella littoralis U1_48UTRP-littoralis_Contig703 34121..34272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791471.7275853-CDS-P-littoralis_Contig703:32705..329491680791471.7275853-CDS-P-littoralis_Contig703:32705..32949Pylaiella littoralis U1_48CDSP-littoralis_Contig703 32706..32949 +
1680791471.7380817-CDS-P-littoralis_Contig703:34058..341201680791471.7380817-CDS-P-littoralis_Contig703:34058..34120Pylaiella littoralis U1_48CDSP-littoralis_Contig703 34059..34120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig703.2.1prot_P-littoralis_Contig703.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig703 32706..34120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig703.2.1

>prot_P-littoralis_Contig703.2.1 ID=prot_P-littoralis_Contig703.2.1|Name=mRNA_P-littoralis_Contig703.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MTGMAGVSSAFVCSAGAGSGAGSCAASATSGTTATAAATAAAVSVESGTT
ASTAAAASAASAAVLALLLYCCAADPTRVLTGSSIRPLRHAAAGRGLIAA
S*
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mRNA from alignment at P-littoralis_Contig703:32625..34272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig703.2.1 ID=mRNA_P-littoralis_Contig703.2.1|Name=mRNA_P-littoralis_Contig703.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-littoralis_Contig703:32625..34272+ (Pylaiella littoralis U1_48)
CAACTCGCCACTCGCCGCCTGTTCTTCTGTCGGGAAGAGCACCTACGTCT
CGGCACCCACGGCCCAAGGTGTGAGTGCACGATGACAGGAATGGCGGGGG
TGTCGTCTGCGTTCGTTTGCAGTGCTGGTGCTGGTAGTGGTGCAGGTTCT
TGTGCTGCCTCCGCCACATCTGGTACCACTGCTACTGCTGCTGCTACGGC
TGCTGCTGTTTCTGTTGAATCTGGTACTACTGCGTCAACGGCTGCTGCTG
CTTCTGCTGCTTCTGCTGCTGTACTCGCACTGCTGCTGTACTGCTGTGCT
GCTGATCCGACGAGGGTCTTGACGGGTGAGTTGACAGTCGGCTGGATGCT
GGATGTTGTTGTTTCCATTGCTGTGATATCACTGTTGTTGTTGCTGATGC
TGTAGCTGTGTTCTTGCGTTCGTTTGATGGAGTAAAACTCGCCCCGTACG
TCTTCCTTCTTGACATGCTGCACAGGTGTTCACGAGTGAGTTGACATTCG
ACTGGTTGTTGTTTCCACGTTGGTTGCAGTTGCCGCTGTGCTGGTGCTGT
AGTGTTTGATGTTGAGTAAAACTGGCCCCATAATTCTAGCTTTGCATTCA
GCCAGCTCGAGAAGAAGCTGGAGTCGCAGTCACACTGGGTAGGCCCGAAA
CGGTCGGATAGGGAGCCGGTAAACATGCTCAATTTATTAACGTGACATCA
CTGATGTCAGGCGGGGCATCATAAAGTCGTACCTTATGTTGAGGAGGGCG
TGGTCTGAGAAGAGGGCGAAGGAGATGTGGATCAACATCGCATCGCCTGG
GAGGTAACCATCATAATGGGTATTTGGTGCAAGGTGCAGTTTGCCCGTGT
ATGGGTGTTGTGTGGTGAGGTGTGGGCGCTGGGCCGTGGTGATATGGTAT
GGGCTCTGGGCCGTGGCACTGGGCCGTATACTTGAGAAAGGCTCTGGGCC
TGGAGTCTGGAGGCCCTGGGCCTGTAGTTTGGGAAGGCGCTGGGCCGAAC
TTGATAGATTGATCAGAAGCACAGAGGCAACACGGTCGCTCGGGTGGCTC
ACTCAAAGCTTCAAGAAGAAGCGACCTACGACATCATACGAAACACGTAA
CCCACCGCATCGATCCACGATGTTCCCGAACAATGATCTCCGTAGAACTG
CAACCGATGAACAAACGATCGCATGCTGCTGCGAGTACATCCAACACATC
ACATGGCTAGCGGGATCGCTCTAAACGGAACCCCGTTGCAGTTCCCTGTG
CAAAATGTGTCTCTTATCTGCAACCTCCAACGCCGGTTTGGGCCCCGCCA
TCTTGCACTGTGCCCTTTACGTTGCGGGTGCGAGGCACTGTTTTTCGAAG
ATGACGCGATTACCTTTCCTTACTAGTCGTCCCCTATGACATTCTCCGTC
GTCATGCCTCCTTCCTTCGAACCCGCTTTTTCAGGATCATCCATCCGGCC
GCTGCGCCATGCAGCTGCAGGAAGGGGACTCATTGCAGCGTCATAGCAGC
GCCTTACCCAAGGCGACGTTGGAGGGGTTGCGGGGGGTGCAGTGAATGAA
GAGTGCGCAACACACATCCAGCCTCCGCACCCGTCCTCGCTTTTAACAAC
ACACGCACACACACGTGTGGTGGAATTTATTTGTGGTGCATGTGTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig703:32625..34272+

>mRNA_P-littoralis_Contig703.2.1 ID=mRNA_P-littoralis_Contig703.2.1|Name=mRNA_P-littoralis_Contig703.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig703:32625..34272+ (Pylaiella littoralis U1_48)
ATGACAGGAATGGCGGGGGTGTCGTCTGCGTTCGTTTGCAGTGCTGGTGC
TGGTAGTGGTGCAGGTTCTTGTGCTGCCTCCGCCACATCTGGTACCACTG
CTACTGCTGCTGCTACGGCTGCTGCTGTTTCTGTTGAATCTGGTACTACT
GCGTCAACGGCTGCTGCTGCTTCTGCTGCTTCTGCTGCTGTACTCGCACT
GCTGCTGTACTGCTGTGCTGCTGATCCGACGAGGGTCTTGACGGGATCAT
CCATCCGGCCGCTGCGCCATGCAGCTGCAGGAAGGGGACTCATTGCAGCG
TCATAG
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