mRNA_P-littoralis_Contig70.45.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.45.7
Unique NamemRNA_P-littoralis_Contig70.45.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig70.45.7 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.910e-7
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:  472 AGGRHRETLAFMARQRKQAAKEKRRAEQEKLETAENLRRALE 597
            +G RHR+TLAFM RQRKQAA EKRRA+QEK+E+AENLRRALE
Sbjct:  172 SGDRHRQTLAFMVRQRKQAAMEKRRAQQEKIESAENLRRALE 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.45.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUD9_ECTSI3.910e-780.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:271007..272105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size812
Hectar predicted targeting categoryother localisation
Exons2
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791463.446674-CDS-P-littoralis_Contig70:271006..2712191680791463.446674-CDS-P-littoralis_Contig70:271006..271219Pylaiella littoralis U1_48CDSP-littoralis_Contig70 271007..271219 -
1680791463.4615412-CDS-P-littoralis_Contig70:271508..2721051680791463.4615412-CDS-P-littoralis_Contig70:271508..272105Pylaiella littoralis U1_48CDSP-littoralis_Contig70 271509..272105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.45.7prot_P-littoralis_Contig70.45.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 271007..272105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.45.7

>prot_P-littoralis_Contig70.45.7 ID=prot_P-littoralis_Contig70.45.7|Name=mRNA_P-littoralis_Contig70.45.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=270bp
PLRRRVLRSGGTGGAHASAGVSKAHVTDAGRRNGSAVVERALEQPPAGAG
RGRGRAGGLRVAVGGDGDGSKAVSSAPGGREEGAPVPGPSSKDISAAPAV
VARARTAVPGRDGEGGTSNTAVVQSHGRHEEKAAAMEEEAGAQEQQRRRE
RGGKDAYAGGRHRETLAFMARQRKQAAKEKRRAEQEKLETAENLRRALEK
LEHTRRRNLAQQRPLRSRSRENMHAPRQPRSAPVAAGRARRRPHSSAAVT
REAPPPPEPRPAWVGAGERK
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mRNA from alignment at P-littoralis_Contig70:271007..272105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.45.7 ID=mRNA_P-littoralis_Contig70.45.7|Name=mRNA_P-littoralis_Contig70.45.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=1099bp|location=Sequence derived from alignment at P-littoralis_Contig70:271007..272105- (Pylaiella littoralis U1_48)
CCACTCCGGAGAAGGGTGCTACGGAGTGGCGGAACGGGGGGGGCACACGC
CTCAGCCGGTGTTTCCAAAGCTCACGTGACGGACGCTGGAAGGAGAAACG
GAAGTGCCGTGGTCGAGCGTGCCTTGGAGCAGCCGCCGGCAGGGGCAGGG
CGGGGGAGAGGCAGAGCAGGAGGTCTAAGGGTCGCTGTAGGCGGCGATGG
TGATGGCAGTAAGGCGGTTAGCTCGGCCCCAGGTGGGCGGGAAGAGGGCG
CCCCAGTTCCAGGACCATCATCGAAGGATATTTCTGCCGCTCCTGCGGTC
GTTGCTAGGGCTAGGACAGCTGTTCCCGGTCGGGATGGAGAGGGCGGGAC
CAGCAACACCGCTGTGGTGCAGTCGCACGGTAGACATGAGGAAAAGGCGG
CCGCCATGGAAGAAGAGGCGGGGGCACAGGAGCAGCAGCGGCGGCGAGAG
CGAGGCGGCAAGGATGCTTACGCCGGGGGTCGGCACCGAGAAACGCTGGC
GTTCATGGCCAGGCAACGGAAGCAGGCTGCCAAAGAGAAGCGCCGGGCGG
AGCAAGAGAAGCTGGAGACTGCCGAGAACTTGAGGCGCGCACTGGAGGCA
AGTGTTTCTTTTGTTCGTTTCAGCAGTGAACAAACCATAGTGCTGTATAT
TCCACTGAATTCACATTTAAATATTGTGCTGGCCATCCACCTGGTCGCCA
CATTCTCTTTTCTTATCCTATGCAGTTGGGAGCCTCTCTTCATGGACATG
TTGATTCTGTTGTTACAAGCTCGGAGGTAAATTGTACAATGATCCGCTGG
ATTCCCACTCTCACCCTGCCCACCGTCTTTTGACGCCGTTCGTTGTTGCG
GCAACGATGCCTGCCCCTCTTGTATAAAACAACCAGAAGCTCGAGCACAC
ACGAAGGCGAAATCTCGCGCAGCAGCGCCCTCTCCGCTCGCGGTCTCGAG
AAAACATGCACGCGCCCAGGCAACCCCGCTCTGCGCCAGTTGCTGCTGGG
CGTGCAAGGCGGCGTCCGCACAGCTCGGCAGCTGTGACACGCGAGGCGCC
GCCGCCGCCGGAGCCGCGGCCGGCGTGGGTTGGCGCCGGAGAGAGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:271007..272105-

>mRNA_P-littoralis_Contig70.45.7 ID=mRNA_P-littoralis_Contig70.45.7|Name=mRNA_P-littoralis_Contig70.45.7|organism=Pylaiella littoralis U1_48|type=CDS|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig70:271007..272105- (Pylaiella littoralis U1_48)
CCACTCCGGAGAAGGGTGCTACGGAGTGGCGGAACGGGGGGGGCACACGC
CTCAGCCGGTGTTTCCAAAGCTCACGTGACGGACGCTGGAAGGAGAAACG
GAAGTGCCGTGGTCGAGCGTGCCTTGGAGCAGCCGCCGGCAGGGGCAGGG
CGGGGGAGAGGCAGAGCAGGAGGTCTAAGGGTCGCTGTAGGCGGCGATGG
TGATGGCAGTAAGGCGGTTAGCTCGGCCCCAGGTGGGCGGGAAGAGGGCG
CCCCAGTTCCAGGACCATCATCGAAGGATATTTCTGCCGCTCCTGCGGTC
GTTGCTAGGGCTAGGACAGCTGTTCCCGGTCGGGATGGAGAGGGCGGGAC
CAGCAACACCGCTGTGGTGCAGTCGCACGGTAGACATGAGGAAAAGGCGG
CCGCCATGGAAGAAGAGGCGGGGGCACAGGAGCAGCAGCGGCGGCGAGAG
CGAGGCGGCAAGGATGCTTACGCCGGGGGTCGGCACCGAGAAACGCTGGC
GTTCATGGCCAGGCAACGGAAGCAGGCTGCCAAAGAGAAGCGCCGGGCGG
AGCAAGAGAAGCTGGAGACTGCCGAGAACTTGAGGCGCGCACTGGAGAAG
CTCGAGCACACACGAAGGCGAAATCTCGCGCAGCAGCGCCCTCTCCGCTC
GCGGTCTCGAGAAAACATGCACGCGCCCAGGCAACCCCGCTCTGCGCCAG
TTGCTGCTGGGCGTGCAAGGCGGCGTCCGCACAGCTCGGCAGCTGTGACA
CGCGAGGCGCCGCCGCCGCCGGAGCCGCGGCCGGCGTGGGTTGGCGCCGG
AGAGAGGAAG
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