mRNA_P-littoralis_Contig70.52.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.52.2
Unique NamemRNA_P-littoralis_Contig70.52.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig70.52.2 vs. uniprot
Match: D7FUE0_ECTSI (40S ribosomal protein S27 n=3 Tax=PX clade TaxID=569578 RepID=D7FUE0_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.480e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:   57 MPADLLHPTSSHEKRVHKLKRLVQSPN 137
            MPADLLHPTSSHEKRVHKLKRLVQSPN
Sbjct:    1 MPADLLHPTSSHEKRVHKLKRLVQSPN 27
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BLAST of mRNA_P-littoralis_Contig70.52.2 vs. uniprot
Match: A0A168P4M0_ABSGL (40S ribosomal protein S27 n=21 Tax=Mucorales TaxID=4827 RepID=A0A168P4M0_ABSGL)

HSP 1 Score: 50.1 bits (118), Expect = 1.200e-5
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 3 
Query:   54 TMPADLLHPTSSHEKRVHKLKRLVQSPN 137
            T+  DLLHPT  HEKR HKLKRLVQSPN
Sbjct:    2 TLAVDLLHPTVEHEKRSHKLKRLVQSPN 29
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BLAST of mRNA_P-littoralis_Contig70.52.2 vs. uniprot
Match: A0A3B4TRZ3_SERDU (40S ribosomal protein S27 n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TRZ3_SERDU)

HSP 1 Score: 48.9 bits (115), Expect = 3.760e-5
Identity = 23/33 (69.70%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:   39 PLSFATMPADLLHPTSSHEKRVHKLKRLVQSPN 137
            P SF T+  DLLHPT   EKR HK KRLVQSPN
Sbjct:    2 PESFYTLAKDLLHPTPEEEKRRHKKKRLVQSPN 34
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BLAST of mRNA_P-littoralis_Contig70.52.2 vs. uniprot
Match: A0A7S1D5F3_CYCTE (40S ribosomal protein S27 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5F3_CYCTE)

HSP 1 Score: 48.5 bits (114), Expect = 7.730e-5
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 3 
Query:   12 SHNLCSSSTPLS-----FATMP---ADLLHPTSSHEKRVHKLKRLVQSPN 137
            SH  C +S   S      ATMP   ADLLHP ++ EKR HKLKRLVQSPN
Sbjct:    3 SHRDCDTSLQSSSQRDFIATMPKPLADLLHPEAADEKRKHKLKRLVQSPN 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.52.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUE0_ECTSI1.480e-9100.0040S ribosomal protein S27 n=3 Tax=PX clade TaxID=5... [more]
A0A168P4M0_ABSGL1.200e-578.5740S ribosomal protein S27 n=21 Tax=Mucorales TaxID... [more]
A0A3B4TRZ3_SERDU3.760e-569.7040S ribosomal protein S27 n=1 Tax=Seriola dumerili... [more]
A0A7S1D5F3_CYCTE7.730e-558.0040S ribosomal protein S27 n=1 Tax=Cyclophora tenui... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:282345..283162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUE0
Preferred nameRPS27
PFAMsRibosomal_S27e
Model size369
Max annot lvl2759|Eukaryota
KEGG koko:K02978,ko:K08053,ko:K18061
KEGG Pathwayko03010,ko04010,ko04014,ko05203,map03010,map04010,map04014,map05203
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006919,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0008494,GO:0008630,GO:0008656,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0010948,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016504,GO:0016505,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030162,GO:0030234,GO:0030312,GO:0030330,GO:0030490,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042255,GO:0042274,GO:0042770,GO:0042771,GO:0042772,GO:0042788,GO:0042886,GO:0042981,GO:0043028,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045182,GO:0045184,GO:0045727,GO:0045786,GO:0045862,GO:0045930,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0055044,GO:0060255,GO:0061134,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090079,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097190,GO:0097193,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:1990904,GO:2000045,GO:2000112,GO:2000116,GO:2000134,GO:2001056
Exons2
Evalue3.54e-10
EggNOG OGsCOG2051@1|root,KOG1779@2759|Eukaryota
Ec32 ortholog description40S ribosomal protein S27
Ec32 orthologEc-03_000590.1
Descriptionribosomal small subunit assembly
Cds size303
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.4794772-UTR-P-littoralis_Contig70:282344..2823541680791461.4794772-UTR-P-littoralis_Contig70:282344..282354Pylaiella littoralis U1_48UTRP-littoralis_Contig70 282345..282354 -
1680791461.5241213-UTR-P-littoralis_Contig70:283106..2831621680791461.5241213-UTR-P-littoralis_Contig70:283106..283162Pylaiella littoralis U1_48UTRP-littoralis_Contig70 283107..283162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.4921556-CDS-P-littoralis_Contig70:282354..2825741680791461.4921556-CDS-P-littoralis_Contig70:282354..282574Pylaiella littoralis U1_48CDSP-littoralis_Contig70 282355..282574 -
1680791461.5069573-CDS-P-littoralis_Contig70:283023..2831061680791461.5069573-CDS-P-littoralis_Contig70:283023..283106Pylaiella littoralis U1_48CDSP-littoralis_Contig70 283024..283106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.52.2prot_P-littoralis_Contig70.52.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 282355..283106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.52.2

>prot_P-littoralis_Contig70.52.2 ID=prot_P-littoralis_Contig70.52.2|Name=mRNA_P-littoralis_Contig70.52.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MPADLLHPTSSHEKRVHKLKRLVQSPNRPKGPTPSTEFWANPPDLPPTAS
MCRYTSSSTTSGEDAGIFHFSTRRKDRIGCAAIGSRQHGAPKCSRLDRDE
*
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mRNA from alignment at P-littoralis_Contig70:282345..283162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.52.2 ID=mRNA_P-littoralis_Contig70.52.2|Name=mRNA_P-littoralis_Contig70.52.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=818bp|location=Sequence derived from alignment at P-littoralis_Contig70:282345..283162- (Pylaiella littoralis U1_48)
GCCTTGCACGGTCCCACAATCTGTGCAGCAGCAGTACCCCCTTATCCTTT
GCCACCATGCCGGCCGATCTCTTGCACCCCACCTCCTCCCACGAGAAGAG
GGTCCACAAGCTCAAGAGGCTGGTACAGAGCCCCAACAGGTGCGCGAGAA
ATTTGCCAAATTGAGATGTTGCTTGGTGCCGCAGCTCCCAGTGAGATGAA
TGGATTGTGTGCCTTTGTAGCCTGAGGTAAATGGTACATGGAGACAGGTC
CTTCCAGACTACGTTGCAAGCAGACTTGTGGCGATCACGTCTCATTGCGT
CGGTGGCTTGTCGGCCGTCGTGGCATAAAGTCTGATTGTTTTTGCCATCG
AGCTTGTCTTGCTTTTAGTTGTGGAAAAAACCAGCTGCAAAAAGCACATA
AGCAAACCGCGGTCCGAGAACGTTCACACAGAAAGGTCCTCACCTCCGTT
TCTCCGGTGACAAACGTGCTTCTTCCCATTTCGTCTTGTGTATCACCGCC
GTCCAAAGAGGTGCGGTCTTTAACAAAAACGTCCTCTGATCCAAGAAGCT
GTTGCTGGGCGGTATTGTGTCATATGTGGTAGGCACAGACCGAAGGGTCC
AACACCCTCGACAGAGTTCTGGGCCAACCCACCCGACCTGCCGCCGACAG
CCTCCATGTGCCGATATACATCATCCAGCACAACAAGCGGAGAGGATGCT
GGCATTTTTCATTTCTCCACCCGAAGGAAGGATAGAATCGGCTGTGCGGC
AATTGGTTCGCGGCAACATGGTGCGCCGAAATGTTCGAGACTTGACAGAG
ATGAATGACGCCCAGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:282345..283162-

>mRNA_P-littoralis_Contig70.52.2 ID=mRNA_P-littoralis_Contig70.52.2|Name=mRNA_P-littoralis_Contig70.52.2|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig70:282345..283162- (Pylaiella littoralis U1_48)
ATGCCGGCCGATCTCTTGCACCCCACCTCCTCCCACGAGAAGAGGGTCCA
CAAGCTCAAGAGGCTGGTACAGAGCCCCAACAGACCGAAGGGTCCAACAC
CCTCGACAGAGTTCTGGGCCAACCCACCCGACCTGCCGCCGACAGCCTCC
ATGTGCCGATATACATCATCCAGCACAACAAGCGGAGAGGATGCTGGCAT
TTTTCATTTCTCCACCCGAAGGAAGGATAGAATCGGCTGTGCGGCAATTG
GTTCGCGGCAACATGGTGCGCCGAAATGTTCGAGACTTGACAGAGATGAA
TGA
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