mRNA_P-littoralis_Contig7.252.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.252.1
Unique NamemRNA_P-littoralis_Contig7.252.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.252.1 vs. uniprot
Match: D7FV65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV65_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.120e-37
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 3 
Query:   12 METVNPLLASALDFLKQGDVERAEKEFTEATVCSVRAFGEVDIVTARTLAHLARVCSLRGKKDVAAQMYERILRIQEALPAPVNCDHAAALSELA 296
            ME VNPLLA+AL  LKQG  E AEKEFT+A    + AFGE DIVTARTLAHLARVC L+GK DVA QMYERILRI EALP P+N DHA AL ELA
Sbjct:    1 MEIVNPLLANALGVLKQGSTEIAEKEFTKAVSACLTAFGETDIVTARTLAHLARVCRLQGKVDVAIQMYERILRIHEALPEPLNSDHAVALGELA 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV65_ECTSI1.120e-3773.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:990869..991362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7159.AAEL009877-PA
Model size298
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000801
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota,397U6@33154|Opisthokonta,3CC3H@33208|Metazoa,3DTDB@33213|Bilateria,429GA@6656|Arthropoda,3T19V@50557|Insecta,45B2D@7147|Diptera,45M9M@7148|Nematocera
DescriptionAmyloid binding protein
Cds size285
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791457.8606594-CDS-P-littoralis_Contig7:990868..9910331680791457.8606594-CDS-P-littoralis_Contig7:990868..991033Pylaiella littoralis U1_48CDSP-littoralis_Contig7 990869..991033 -
1680791457.876007-CDS-P-littoralis_Contig7:991231..9913511680791457.876007-CDS-P-littoralis_Contig7:991231..991351Pylaiella littoralis U1_48CDSP-littoralis_Contig7 991232..991351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791457.887029-UTR-P-littoralis_Contig7:991351..9913621680791457.887029-UTR-P-littoralis_Contig7:991351..991362Pylaiella littoralis U1_48UTRP-littoralis_Contig7 991352..991362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.252.1prot_P-littoralis_Contig7.252.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 990869..991351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.252.1

>prot_P-littoralis_Contig7.252.1 ID=prot_P-littoralis_Contig7.252.1|Name=mRNA_P-littoralis_Contig7.252.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
METVNPLLASALDFLKQGDVERAEKEFTEATVCSVRAFGEVDIVTARTLA
HLARVCSLRGKKDVAAQMYERILRIQEALPAPVNCDHAAALSELA
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mRNA from alignment at P-littoralis_Contig7:990869..991362-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.252.1 ID=mRNA_P-littoralis_Contig7.252.1|Name=mRNA_P-littoralis_Contig7.252.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=494bp|location=Sequence derived from alignment at P-littoralis_Contig7:990869..991362- (Pylaiella littoralis U1_48)
CACACTCGAGAATGGAGACCGTGAATCCCCTATTAGCCAGCGCCCTGGAC
TTTCTGAAGCAAGGAGATGTTGAACGCGCAGAGAAAGAATTTACGGAGGC
TACGGTGTGTTCAGTGAGGGCCTTCGGCGAGGCAAGATCCGTTCCTTACG
ATACTCACAGTCCGATGGAGATCCGAAAAATACCGTTTTGATATTAGTAC
ACGGAGTGTATACGGCAGTGCAACAATTTGTCATGCTTCACAGCCGCTCC
GTTGTACACACTCTCACCCACACAGTGCAGGCACTGCTATGTTGACTAAA
AATATCGCCGCCCTGTTCTTTTTGTGCAGGTGGACATAGTGACGGCGAGA
ACTCTCGCACATCTTGCCCGCGTGTGCTCTCTGCGCGGGAAGAAAGATGT
TGCGGCGCAAATGTATGAGAGAATACTACGGATACAAGAGGCTTTGCCAG
CACCTGTGAACTGTGACCACGCTGCTGCCTTGAGCGAGCTAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:990869..991362-

>mRNA_P-littoralis_Contig7.252.1 ID=mRNA_P-littoralis_Contig7.252.1|Name=mRNA_P-littoralis_Contig7.252.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig7:990869..991362- (Pylaiella littoralis U1_48)
ATGGAGACCGTGAATCCCCTATTAGCCAGCGCCCTGGACTTTCTGAAGCA
AGGAGATGTTGAACGCGCAGAGAAAGAATTTACGGAGGCTACGGTGTGTT
CAGTGAGGGCCTTCGGCGAGGTGGACATAGTGACGGCGAGAACTCTCGCA
CATCTTGCCCGCGTGTGCTCTCTGCGCGGGAAGAAAGATGTTGCGGCGCA
AATGTATGAGAGAATACTACGGATACAAGAGGCTTTGCCAGCACCTGTGA
ACTGTGACCACGCTGCTGCCTTGAGCGAGCTAGCT
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