mRNA_P-littoralis_Contig7.238.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.238.1
Unique NamemRNA_P-littoralis_Contig7.238.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.238.1 vs. uniprot
Match: A0A6H5KLH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.740e-11
Identity = 58/199 (29.15%), Postives = 83/199 (41.71%), Query Frame = 1 
Query:   94 KAVGFGAPGVRDT----LRQSADSSRDRGRCYKV--------MPAQPNYEWVETWGDSDGNCGVRAILQVANGGETPSHDDVHGFRTRVVQAVAQNPDRFQHVLAE-------QRELEEWSH-MGEDGYWANYMFMLVARDEFCRSVKFV---VLADEEQEVLAAYGHDELDVESPMILCRGNHFTALRRVSAGGDGDN 621
            + VG G  G R+         +  +R+ G    V        +P     E+ + +    G CG  A+ Q+A+  ETPS +++ G+R   VQ V  NP  F     E        R  ++W+  M     WA+Y  ML    ++C     V      D+    L AYG D L+   PMI+ R  HF     V  GGDG N
Sbjct:   39 REVGGGGSGGRENPTFDFSDGSGPNREDGSDSSVWVVPSVWTVPGDNTREYSKRYNPGRGGCGPYAVGQLASS-ETPSSEELAGYRLGGVQYVLDNPATFGDDFWEGDTPEERARSRQDWARRMLRPREWADYPLMLGMIAQYCSDAIIVEPKFPGDKSNRELKAYGEDVLEPSKPMIMIRCAHFVVFDEVRRGGDGGN 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLH7_9PHAE2.740e-1129.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:925906..926965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons2
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791456.627121-UTR-P-littoralis_Contig7:925905..9259891680791456.627121-UTR-P-littoralis_Contig7:925905..925989Pylaiella littoralis U1_48UTRP-littoralis_Contig7 925906..925989 +
1680791456.6378074-UTR-P-littoralis_Contig7:926314..9263201680791456.6378074-UTR-P-littoralis_Contig7:926314..926320Pylaiella littoralis U1_48UTRP-littoralis_Contig7 926315..926320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791456.6492963-CDS-P-littoralis_Contig7:926320..9269651680791456.6492963-CDS-P-littoralis_Contig7:926320..926965Pylaiella littoralis U1_48CDSP-littoralis_Contig7 926321..926965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.238.1prot_P-littoralis_Contig7.238.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 926321..926965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.238.1

>prot_P-littoralis_Contig7.238.1 ID=prot_P-littoralis_Contig7.238.1|Name=mRNA_P-littoralis_Contig7.238.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
MKAVGFGAPGVRDTLRQSADSSRDRGRCYKVMPAQPNYEWVETWGDSDGN
CGVRAILQVANGGETPSHDDVHGFRTRVVQAVAQNPDRFQHVLAEQRELE
EWSHMGEDGYWANYMFMLVARDEFCRSVKFVVLADEEQEVLAAYGHDELD
VESPMILCRGNHFTALRRVSAGGDGDNRGGGGGDPNSSSICNGSGGVEGG
GAGGGGSSGGRSSSH
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mRNA from alignment at P-littoralis_Contig7:925906..926965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.238.1 ID=mRNA_P-littoralis_Contig7.238.1|Name=mRNA_P-littoralis_Contig7.238.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1060bp|location=Sequence derived from alignment at P-littoralis_Contig7:925906..926965+ (Pylaiella littoralis U1_48)
GCTTATTCTTCTCTGCCACTCGACACGCAGGTCGCCGACCCGGCCCGCAG
CAGCGACGACTCCACCAGCAACATCGAATATGAGGCAAGTAGTGACATGC
ACATGCTGCGGTATTCTGTGTTGCCAGTTTGCTTTCTTGTCGTCTCAAGC
CTTTCCGATCAGAGCACGTGACGTATGTTGTATAGCGAAGCGGCCGGCGA
GGTCTTCCTCTCTTTGGCATGAACTCCCGGTTTTTTTCCCCTTGCTGTGG
TCAGAGGGCAGAGATTCGGACTCGTCACTGCCCACTTTAGCGCTCTGTGT
GGATGGTGTTCGACCCACATGTGTTTCTGTTCATCACCCGACGATGCTCT
CAATCGATCCATCTTGCCATATTCATACCGTGATGTGATCATCGGTGATT
ACTCTGCAGTGACTCATGAAGGCCGTGGGGTTTGGAGCGCCGGGGGTTCG
TGATACCCTGCGTCAGAGCGCCGACTCCTCGCGTGACCGCGGGAGGTGCT
ACAAAGTGATGCCAGCCCAGCCGAATTACGAGTGGGTGGAGACCTGGGGC
GATTCCGACGGAAACTGCGGTGTGCGTGCCATCCTACAGGTGGCCAACGG
TGGGGAGACGCCCTCTCACGATGATGTCCACGGCTTTCGTACGAGAGTGG
TGCAAGCAGTCGCGCAGAATCCGGATAGGTTCCAGCACGTGCTCGCGGAG
CAGCGGGAGCTGGAAGAGTGGTCGCACATGGGCGAGGACGGTTACTGGGC
GAACTACATGTTCATGCTTGTCGCCCGCGACGAGTTCTGTCGTTCTGTCA
AGTTCGTGGTGCTCGCCGACGAGGAGCAGGAGGTCCTCGCTGCGTACGGC
CACGACGAGCTGGACGTCGAGTCACCGATGATCTTGTGTCGGGGCAACCA
TTTCACAGCTCTGCGCAGGGTGAGTGCTGGCGGGGACGGCGACAACCGTG
GTGGAGGTGGCGGCGACCCCAACAGCAGCAGCATTTGCAATGGGAGCGGT
GGAGTAGAAGGGGGAGGGGCGGGCGGCGGCGGGAGCAGCGGTGGTCGCAG
CAGCAGTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:925906..926965+

>mRNA_P-littoralis_Contig7.238.1 ID=mRNA_P-littoralis_Contig7.238.1|Name=mRNA_P-littoralis_Contig7.238.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig7:925906..926965+ (Pylaiella littoralis U1_48)
ATGAAGGCCGTGGGGTTTGGAGCGCCGGGGGTTCGTGATACCCTGCGTCA
GAGCGCCGACTCCTCGCGTGACCGCGGGAGGTGCTACAAAGTGATGCCAG
CCCAGCCGAATTACGAGTGGGTGGAGACCTGGGGCGATTCCGACGGAAAC
TGCGGTGTGCGTGCCATCCTACAGGTGGCCAACGGTGGGGAGACGCCCTC
TCACGATGATGTCCACGGCTTTCGTACGAGAGTGGTGCAAGCAGTCGCGC
AGAATCCGGATAGGTTCCAGCACGTGCTCGCGGAGCAGCGGGAGCTGGAA
GAGTGGTCGCACATGGGCGAGGACGGTTACTGGGCGAACTACATGTTCAT
GCTTGTCGCCCGCGACGAGTTCTGTCGTTCTGTCAAGTTCGTGGTGCTCG
CCGACGAGGAGCAGGAGGTCCTCGCTGCGTACGGCCACGACGAGCTGGAC
GTCGAGTCACCGATGATCTTGTGTCGGGGCAACCATTTCACAGCTCTGCG
CAGGGTGAGTGCTGGCGGGGACGGCGACAACCGTGGTGGAGGTGGCGGCG
ACCCCAACAGCAGCAGCATTTGCAATGGGAGCGGTGGAGTAGAAGGGGGA
GGGGCGGGCGGCGGCGGGAGCAGCGGTGGTCGCAGCAGCAGTCAC
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