mRNA_P-littoralis_Contig7.208.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.208.1
Unique NamemRNA_P-littoralis_Contig7.208.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:821643..822164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS10
Model size522
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000154
EggNOG OGs2E84P@1|root,2SEN4@2759|Eukaryota
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791455.6402583-UTR-P-littoralis_Contig7:821642..8217631680791455.6402583-UTR-P-littoralis_Contig7:821642..821763Pylaiella littoralis U1_48UTRP-littoralis_Contig7 821643..821763 -
1680791455.660288-UTR-P-littoralis_Contig7:821880..8221641680791455.660288-UTR-P-littoralis_Contig7:821880..822164Pylaiella littoralis U1_48UTRP-littoralis_Contig7 821881..822164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791455.6507516-CDS-P-littoralis_Contig7:821763..8218801680791455.6507516-CDS-P-littoralis_Contig7:821763..821880Pylaiella littoralis U1_48CDSP-littoralis_Contig7 821764..821880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.208.1prot_P-littoralis_Contig7.208.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 821764..821880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.208.1

>prot_P-littoralis_Contig7.208.1 ID=prot_P-littoralis_Contig7.208.1|Name=mRNA_P-littoralis_Contig7.208.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=39bp
MSVLFPLHPTPPKMTCDSNAEMHQLVTGFRDLQSKCGK*
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mRNA from alignment at P-littoralis_Contig7:821643..822164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.208.1 ID=mRNA_P-littoralis_Contig7.208.1|Name=mRNA_P-littoralis_Contig7.208.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig7:821643..822164- (Pylaiella littoralis U1_48)
ATGATAGCTCGGAGCAGTGCGAATAATTCCATGGTCGTTCTTTATATTTA
AGATCGCCCCCCACCTTTTCCTGGCCTTGAACTTGTAACACGAGGATGTG
CATTGCATTTCGACGGGGGAAGTGCATCAGTTGTGAGATATGGACGTACT
ATGTAGCGGTTGTGATGATGCGATGCAGCTTTCTGTGAAAACCTTGTATG
ATTGGTTTCACAGACCTTTGATAACGACAAGTGTCTAAGCACGACATCAA
CGGTGACGAACTACCGACCTCCCCATGGGTACTGATGTCGGTCCTGTTCC
CCCTCCACCCCACCCCACCCAAGATGACCTGCGATAGCAACGCCGAGATG
CACCAGCTTGTGACCGGTTTCCGTGACCTCCAGAGCAAGTGCGGCAAATA
GTGAGTGCCCTGCTCTTCCACTGAAAGAGTCTGTTGCACCCCTCCTTCCT
TCCGATGCGGTCAAGGTTATGATCTGACGGCGGCAGTATGTCCAAAGCCC
AGGCTCCGGAGGGGCGAGCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:821643..822164-

>mRNA_P-littoralis_Contig7.208.1 ID=mRNA_P-littoralis_Contig7.208.1|Name=mRNA_P-littoralis_Contig7.208.1|organism=Pylaiella littoralis U1_48|type=CDS|length=117bp|location=Sequence derived from alignment at P-littoralis_Contig7:821643..822164- (Pylaiella littoralis U1_48)
ATGTCGGTCCTGTTCCCCCTCCACCCCACCCCACCCAAGATGACCTGCGA
TAGCAACGCCGAGATGCACCAGCTTGTGACCGGTTTCCGTGACCTCCAGA
GCAAGTGCGGCAAATAG
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