mRNA_P-littoralis_Contig7.61.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.61.3
Unique NamemRNA_P-littoralis_Contig7.61.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: D7FS17_ECTSI (PNP_UDP_1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS17_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 7.010e-113
Identity = 198/299 (66.22%), Postives = 218/299 (72.91%), Query Frame = 3
Query:   99 YLLHANAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTATTTR---------------------------------RSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCRKTR 896
            YLLHANAVPLTAD RVLHLEL  G+VANNIVTVGSE R EILASLL  T                                    RSKRGFVTHTG +NGVPVSI+LINMGYPNMDF VREVRAVT GPL IVRLGSCAGLRPDLPVG+VAVASEGS+ I QNPDAW              +G++A    +GEPY+F+GVAPAD+ LSEALL+ELKRSL G   KAG + G  G TAVVGCLNASADSFYSSQGRLDPSFEDRN D++ +LL RHP AG+FEMETFQLLHLARLCRK++
Sbjct:    7 YLLHANAVPLTADGRVLHLELRSGEVANNIVTVGSEGRGEILASLLDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKRGFVTHTGTYNGVPVSIVLINMGYPNMDFFVREVRAVTTGPLRIVRLGSCAGLRPDLPVGSVAVASEGSVMIRQNPDAW--------------EGTAARGETQGEPYLFHGVAPADEELSEALLKELKRSLDG---KAGGSDGGGG-TAVVGCLNASADSFYSSQGRLDPSFEDRNSDILSSLLERHPSAGSFEMETFQLLHLARLCRKSK 287          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A410UCT3_PHYCP (Uridine phosphorylase n=1 Tax=Phytophthora capsici TaxID=4784 RepID=A0A410UCT3_PHYCP)

HSP 1 Score: 191 bits (484), Expect = 2.980e-51
Identity = 118/268 (44.03%), Postives = 155/268 (57.84%), Query Frame = 3
Query:  108 HANAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTAT--TTRRSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGG-EIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCRKTRQS 902
            + NA+P  +D  VLHL L  G VAN IV+VGS  R+++LA LL      T  S RGF T++G   GVPVSI+   MG PNMDF+VRE RAV NGP+ I+R G+C  +R ++P G+V V  +GSI + +NPDA+ P  +                    + Y    V P+   LS+AL+  ++  L     +    A  D  A  V   LNA+A SFYSSQGRLD +F+DRNE LV+ L   HPD  T EMETF LL LA+  R + Q+
Sbjct:    5 NTNAMPTHSDGTVLHLGLRAGQVANRIVSVGSLGRAKVLAQLLDEGHFETFESARGFTTYSGKVKGVPVSIVATGMGVPNMDFVVRETRAVVNGPMTIIRFGTCGAVREEVPPGSVVVNGKGSIMVTRNPDAFFPGASEE------------------DCYRVSRVMPSSSTLSKALVASMEDKLTALRAEPVIAASSDCDALRVFDGLNATACSFYSSQGRLDSNFDDRNEKLVEDLTTAHPDLYTVEMETFHLLDLAQRSRGSIQA 254          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A7S1RXB5_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RXB5_ALECA)

HSP 1 Score: 189 bits (479), Expect = 2.150e-50
Identity = 112/255 (43.92%), Postives = 148/255 (58.04%), Query Frame = 3
Query:  141 RVLHLELGEGDVANNIVTVGSEARSEILASLLTATTTR------RSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCR 887
            RVLHL L +G+++  I+ VG  AR+++LA LL    T        S RGF+T+TG F G  VS++ I MG   MDF VRE RA   GP+ +VRLG+  GL+  +PVG+VAVA+ GSI + +N  A+A                    H    PY+     PAD  LS A+L+E+++SLG  +               VG LN +ADSFYSSQGRLDP F D N  LV  ++ +HP+A T EMETFQLLHLA+ C+
Sbjct:   37 RVLHLGLADGELSGRILAVGHPARADLLAKLLEPEETGGSLFRLASDRGFLTYTGLFKGERVSVVAIGMGLSMMDFFVREARAAVRGPMAVVRLGTSGGLKASVPVGSVAVATGGSILVQRNYGAFA----------------GGEVHNGDSPYLISSPCPADTELSTAVLREVQQSLGEGM--------------AVGGLNVTADSFYSSQGRLDPCFADCNRSLVDDVVRQHPEAVTMEMETFQLLHLAKCCK 261          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A7S2SVQ5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVQ5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.100e-50
Identity = 113/266 (42.48%), Postives = 160/266 (60.15%), Query Frame = 3
Query:  114 NAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTATTTR-----------RSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLAR 878
            NAVP T + +VLH+++G  +VA  IVTVG+ +R+ +LA        +            S RGF T+TG  +GVP+S+I I MG P MDF++RE+R++  GP+ +VR G+C GL+  +P GTV VA+ GS+ + +NPD++APA        +IG  S +       PY   GVAPAD  LS A+  EL  +L  E+          G   + G +N +ADSFY SQ R DP+F+DR + L+++LL+R+P   T EMETFQL  LAR
Sbjct:   45 NAVPRTQEGKVLHVDVGPQEVAPRIVTVGAASRARLLAGHFDGVNGQDPQRVPGVLYHESSRGFTTYTGTVDGVPLSVIAIGMGMPMMDFMIREIRSIVEGPMIMVRYGTCGGLQEQVPEGTVVVAALGSVSVTRNPDSFAPA--------SIGLPSPS-------PYNISGVAPADVLLSNAVGAELSSTLKREV----------GVQTMFG-MNVTADSFYGSQARKDPNFDDRGDGLLESLLSRYPGLMTMEMETFQLFDLAR 284          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A4D9CWQ0_9STRA (PNP_UDP_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWQ0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.490e-49
Identity = 116/262 (44.27%), Postives = 150/262 (57.25%), Query Frame = 3
Query:  114 NAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTATT---TRRSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPA-VATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCR 887
            NAVP   D   LHL L EG +A+ I++VG   R+ ++A  L  ++   +  S RGF T+TG F    VSII I MG P MDFLVRE R + + PL I R G+C  L PD+ VG+V VAS GS+ + +NPDA+ P   ++ T    I   ++  A     PY+ +    AD  L++ALL ELK  LG E  + G              +N SA SFYSSQGR D  F+DRNEDL+  L  RHP   + EME+FQLL LAR  R
Sbjct:   35 NAVPRNFDSTTLHLGLKEGQIASRILSVGCPGRAALIAKALDKSSPIFSHTSPRGFTTYTGTFERTRVSIIAIGMGMPMMDFLVREARQLVSKPLLITRFGTCGALCPDVAVGSVVVASPGSVSVMRNPDAFLPLPTSSGTSADEINPIATGGAPHVRPPYLVFAPQLADPILTQALLGELKEQLGSEHVRRG--------------MNVSACSFYSSQGRRDVFFDDRNEDLLDMLRERHPSLASMEMESFQLLALARASR 282          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A329RWV8_9STRA (PNP_UDP_1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RWV8_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.770e-49
Identity = 116/268 (43.28%), Postives = 154/268 (57.46%), Query Frame = 3
Query:  108 HANAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLT--ATTTRRSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGG-EIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCRKTRQS 902
            + NA+P  +D  VLHL +  G VAN +V+VGS  R+++LA LL      T  S RGF T TG+  GV VSI+   MG PNMDF+VRE RA+  GP+ I+R G+C  +R ++  G+V V+  GS+ I +NPDA+ P           G+          E Y    V P+   LS+AL+  +   LG    +    A  D  A +V   LNA+A SFYSSQGRLDP+F+DRNE LV+ L   H D  T EMETF LL LA+  R + Q+
Sbjct:    5 NTNAMPTQSDGTVLHLGVKAGQVANRVVSVGSLGRAKLLAQLLDDGQFETIESARGFTTFTGEMKGVQVSIVATGMGVPNMDFVVRETRAIVEGPMIIIRFGTCGAVRKEIAPGSVVVSGNGSVMITRNPDAFFP--------DATGE----------EYYRVSRVMPSSPALSKALVAAMNDKLGALRAEPIIAASIDRDALSVFDGLNATACSFYSSQGRLDPAFDDRNEQLVENLTKTHQDLYTVEMETFHLLDLAQRSRGSIQA 254          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: G4ZZA4_PHYSP (PNP_UDP_1 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZZA4_PHYSP)

HSP 1 Score: 181 bits (460), Expect = 1.430e-48
Identity = 112/256 (43.75%), Postives = 146/256 (57.03%), Query Frame = 3
Query:  108 HANAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTATT--TRRSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEP-YVFYGVAPADKGLSEALLQELKRSLGG-EIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQL 863
            + N +P  +D  VLHL +  G VAN +V+VGS +R+++LA LL      T  S RGF T TG   GVPVS+I   MG PNMDF+VRE RAV  GP+ I+R G+C  ++ ++  G+V V+ +GS+ + +NPDA+ P  A                   GE  Y    V PA   LS+AL+  ++  LG    + A  A  D     V   LNA+A SFYSSQGRLD  F+DRNE LV+ L   HPD  T EMETF L
Sbjct:    5 NTNLMPTHSDSTVLHLGVKAGQVANRVVSVGSLSRAKLLAQLLDDAKFDTFESPRGFTTFTGKKKGVPVSVIATGMGVPNMDFVVRETRAVVQGPMSIIRFGTCGSVQEEVTPGSVVVSGKGSVMVTRNPDAFFPDAA-------------------GEDCYRVSRVMPASPALSKALVASMESKLGALRTEPAIGASSDRDRVGVFDGLNATACSFYSSQGRLDSDFDDRNEHLVEDLTKTHPDLHTVEMETFHL 241          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A5D6YBV4_9STRA (PNP_UDP_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBV4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.630e-47
Identity = 120/289 (41.52%), Postives = 167/289 (57.79%), Query Frame = 3
Query:   72 MSASNQCAPYLLH--ANAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTA--TTTRRSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEAL--LQELKRSLGGEID--------KAGEAGGDSGA---TAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCR 887
            + A + C+  +L+   NA+P  AD  VLHL +  G+VAN +V+VGS  R+ +LA +L      T  S RGF   TG+  GV VSII   MG PNMDF+VRE RA+ +GP+ I+R G+C G++  +P G+V V+S+GS+ I +NPDA+              D ++ A H R        V PA   LS ++   Q+  R+L    D        ++ EA   + A     V G LNA+A SFYSSQGR+D +F+DRNE +V+ LLA HP+  + EMETF LL LA+  R
Sbjct:   18 LRAPSTCSSVMLYENTNAMPKHADGTVLHLGVKHGEVANRVVSVGSLDRARVLAGMLDGGQVATHESSRGFTVFTGEMLGVSVSIIATGMGAPNMDFVVRETRAIVDGPMAIIRFGTCGGIQQGVPPGSVVVSSQGSVSIVRNPDAF------------FADAAADAEHYR-----VSRVMPASAPLSMSVRATQQQSRTLEARRDCKSLLSIMESREAEFQTLAGKKVGVYGGLNATACSFYSSQGRIDAAFDDRNERVVENLLAGHPELHSLEMETFHLLDLAQRSR 289          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A7S3BCG4_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BCG4_9VIRI)

HSP 1 Score: 181 bits (459), Expect = 3.880e-47
Identity = 111/260 (42.69%), Postives = 147/260 (56.54%), Query Frame = 3
Query:  123 PLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTATTTRR-----SKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLARLCR 887
            P   D RV HL+   GDVAN I++VG   R+E LAS+L      R     S RGFVTHTG + G PVS+I   MG  NMD +VRE RAV +G + IVR+G+C GL+P  PVGT+ +AS+G+    +NPDA+A             D  S+      E + F    PAD  LS AL   +++ +G               T+VV  +N +A SFYSSQGR D +F+DRN+DL   L+  +P+A + EMETF LL + R  R
Sbjct:   58 PTDPDGRVYHLQFRRGDVANRIISVGDVGRAEFLASMLEPALDGRVHKVVSSRGFVTHTGRYGGQPVSVIATLMGVSNMDMVVREARAVVDGEMVIVRVGTCGGLQPAAPVGTIVIASKGAASCYRNPDAFAD------------DADSSE-----ELFRFSKPIPADDALSTALAANMRKHVGET-------------TSVVEGMNVTACSFYSSQGRSDAAFDDRNDDLTDVLVEHYPEAMSLEMETFHLLDMCRASR 287          
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Match: A0A7R9Y8J0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y8J0_9VIRI)

HSP 1 Score: 179 bits (455), Expect = 7.800e-47
Identity = 116/263 (44.11%), Postives = 147/263 (55.89%), Query Frame = 3
Query:  108 HANA-VPLTADRRVLHLELGEGDVANNIVTVGSEARSEILASLLTATTTR-----RSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRAVTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATMTKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEIDKAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLARHPDAGTFEMETFQLLHLAR 878
            +ANA  P   D RV HL    GDVAN I++VG   R+E L+++L            S RGFVT+TG +N  PVSII   MG  NMD +VRE RAV +G + +VRLG+C GL+PD PVGTV VAS+G+    +NPDA+ P           G G           Y F    PAD  +S  L++ L+ SL                T VV  L+ +A SFYSSQGR+D +F D NEDL + L+ R+PDA + EMETF LL L R
Sbjct:   31 YANANFPKDPDGRVYHLGFRRGDVANRIISVGDVGRAEFLSTMLEPAADGIVHKVMSSRGFVTYTGRYNDEPVSIIATLMGVANMDMVVREARAVIDGDMAVVRLGTCGGLQPDAPVGTVVVASKGAASCYRNPDAFGP-------DADAGVGK----------YHFSKPVPADGEMSALLVENLRASL-------------DDTTPVVEGLDVTACSFYSSQGRVDAAFIDHNEDLTERLVERYPDAMSLEMETFHLLDLCR 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.61.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS17_ECTSI7.010e-11366.22PNP_UDP_1 domain-containing protein n=2 Tax=Ectoca... [more]
A0A410UCT3_PHYCP2.980e-5144.03Uridine phosphorylase n=1 Tax=Phytophthora capsici... [more]
A0A7S1RXB5_ALECA2.150e-5043.92Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2SVQ5_9STRA3.100e-5042.48Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A4D9CWQ0_9STRA2.490e-4944.27PNP_UDP_1 domain-containing protein n=2 Tax=Monodo... [more]
A0A329RWV8_9STRA2.770e-4943.28PNP_UDP_1 domain-containing protein n=2 Tax=Phytop... [more]
G4ZZA4_PHYSP1.430e-4843.75PNP_UDP_1 domain-containing protein n=6 Tax=Phytop... [more]
A0A5D6YBV4_9STRA2.630e-4741.52PNP_UDP_1 domain-containing protein n=1 Tax=Pythiu... [more]
A0A7S3BCG4_9VIRI3.880e-4742.69Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7R9Y8J0_9VIRI7.800e-4744.11Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:279660..287987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS17
PFAMsPNP_UDP_1
Model size2374
Max annot lvl2759|Eukaryota
KEGG rclassRC00063
KEGG koko:K00757
KEGG ReactionR01876,R02484,R08229
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.15e-118
EggNOG OGsCOG2820@1|root,2RXRP@2759|Eukaryota
Ec32 ortholog descriptionNucleoside phosphorylase
Ec32 orthologEc-12_006840.1
EC2.4.2.3
DescriptionPhosphorylase superfamily
Cds size1221
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.61.3prot_P-littoralis_Contig7.61.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 279731..286905 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791450.462905-UTR-P-littoralis_Contig7:279659..2797301680791450.462905-UTR-P-littoralis_Contig7:279659..279730Pylaiella littoralis U1_48UTRP-littoralis_Contig7 279660..279730 +
1680791450.5471828-UTR-P-littoralis_Contig7:286905..2879871680791450.5471828-UTR-P-littoralis_Contig7:286905..287987Pylaiella littoralis U1_48UTRP-littoralis_Contig7 286906..287987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791450.4814575-CDS-P-littoralis_Contig7:279730..2798331680791450.4814575-CDS-P-littoralis_Contig7:279730..279833Pylaiella littoralis U1_48CDSP-littoralis_Contig7 279731..279833 +
1680791450.4925313-CDS-P-littoralis_Contig7:284566..2847231680791450.4925313-CDS-P-littoralis_Contig7:284566..284723Pylaiella littoralis U1_48CDSP-littoralis_Contig7 284567..284723 +
1680791450.5066335-CDS-P-littoralis_Contig7:285315..2857431680791450.5066335-CDS-P-littoralis_Contig7:285315..285743Pylaiella littoralis U1_48CDSP-littoralis_Contig7 285316..285743 +
1680791450.5165493-CDS-P-littoralis_Contig7:285934..2860661680791450.5165493-CDS-P-littoralis_Contig7:285934..286066Pylaiella littoralis U1_48CDSP-littoralis_Contig7 285935..286066 +
1680791450.529834-CDS-P-littoralis_Contig7:286504..2869051680791450.529834-CDS-P-littoralis_Contig7:286504..286905Pylaiella littoralis U1_48CDSP-littoralis_Contig7 286505..286905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.61.3

>prot_P-littoralis_Contig7.61.3 ID=prot_P-littoralis_Contig7.61.3|Name=mRNA_P-littoralis_Contig7.61.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=407bp
MSASNQCAPYLLHANAVPLTADRRVLHLELGEGDVANNIVTVGSEARSEI
LASLLTATTTRRSKRGFVTHTGDFNGVPVSIILINMGYPNMDFLVREVRA
VTNGPLHIVRLGSCAGLRPDLPVGTVAVASEGSIFIGQNPDAWAPAVATM
TKTTTIGDGSSAAAHQRGEPYVFYGVAPADKGLSEALLQELKRSLGGEID
KAGEAGGDSGATAVVGCLNASADSFYSSQGRLDPSFEDRNEDLVKTLLAR
HPDAGTFEMETFQLLHLARLCRKTRQSNCGRCNRNRQDLANRARGGRGRF
ASCHVLRWRLRRSVLLLPAPCGKVGSPWWSPIRSALLGDRAAWICATTFP
VVAPTSGYRRVRLRRLLAVACASYAGPRWWPSKARGRISERTPHHQMTAF
LPRSEQ*
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mRNA from alignment at P-littoralis_Contig7:279660..287987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.61.3 ID=mRNA_P-littoralis_Contig7.61.3|Name=mRNA_P-littoralis_Contig7.61.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=8328bp|location=Sequence derived from alignment at P-littoralis_Contig7:279660..287987+ (Pylaiella littoralis U1_48)
GGCTCCTCCGTCTATCCGTCTTCCGTCTCCCACCACAGCGGAGCTTGTTT CCCCCCGTCAGCCACGAAACGATGAGTGCATCGAATCAATGTGCCCCGTA TCTTCTCCATGCAAATGCGGTTCCACTTACGGCTGACAGGAGGGTCCTGC ACCTGGAATTGGGTGAAGGCGACGGTACGTGCCAGCCAGTATTATATATG CAGAGGAACGGGGGTTCGATTCCTGGTGAATGTGTTCCTTTGCTACTTTG AAAGCGGCTATGCTGTTAGTAAAATCAGATTCGGCTTCGCCGACGAGGGT AGGGACCGCGGATCCCTGCTCGCGAGAAAAAATATCACGCATGTACCGTA GAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGAC CCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGTG TGCCAGAGAATATGGGATGACAACACTACTTCGTATCTACTCCCTCTGTC CCGATTTATAAGCGTGATTTGGATATTCCGAACATAAGCGTGGTTTGCGC TATATGCTCCAAAATACGTCGTTTGGTCATTGTGAGACGTCGGACAACTT CGGTATGTAATCAGATACCACATTGGACAAAAAAAAAAGGTTCCGGTCAA ATAGGGAGGGGATGATCCGTTGTCATCCCCTGGTTGTGAAAATCGAGGAA AATCGAGCATATTTGTACCCAGCCACGGGAGAAACGAACTGCGGGTGCTG ATGACTCATGGCCGCATTAATAAAACACACTCCCGGGCATATTTTATGGC AGCACCGCCGCGTTTGTCGAATGGGGTAGCTCGGACATCAAGTTGGGGCG GGACGGGGCGGGGGTGAAGTTGGCGTGTGGACAGCAGCAGTAGAATCGCC GCCACTGGGGATGTCGCTTTTACAGCAGTACTCGAGTATAGTGCTCGCAT GGTGTAACACTAATTCTTGCGTTTTGACACCTGGGAGGCACTCCCAGCAG CAGACACCCCTCACCAGGAGATGGGAAGGCTTTTCACCGGAGGTTCAAAG TTGGGGTGGTGATATCGAGCAACTTCTGCTGGGGTGGGACACACCTTCTT GGTTGGGTTTGAAAAAAGGCGCGGGTTCGCACGCTCCGTGCGAGCGCGGC GAAACCAAGGAAAAAAACGGTTCGGGAAAAGACTAAAAATTGCCCAAGAT AGACCGCATTTTGTCCAAATCACGCTTATAAATCGGGACAGAGGGAGTAT ATATTTTAAGGATTGAGGTTAGCTCTTCTTGTCAATTTTTTTACCGTTCA TATACTCTCGGAGTATTATTCAAAATCAAAACCAAAATCGGAGTTGGATT TTGGATTCCGTGTTTGGTCCGATCTGCTGCAGCTTTCGGTTGTCCAAAAT CAAAAGCGGATGCATAAAGAAAAAGCAGTCACAGACAGATGGTGTGTGAT ATGAGCATTACGTGTCGATTCCAAGACAAACAAGTGCGGGAGGCGCTGTC GTGCCTCGAACGAAGAGCACGATGGTGCCCCCACGTCGCCCTGACTCAGG CGCGTTGGTAGTTCTTCTGTGTTTGGGACCGATAACTGAAAAACTCGTCA AAAGATGAGCATAACAGTACAGACAGGCTGGTTCACGGACCCCAAATATA GTCAACAGACTCTCCCGACCGCAATAAAAACTCGATCACGACATACATAT TTGGTACCAAACTGACCGCCACCATTATCAGAAGCCCATGGTATCGTTAG TTTTTTGTCCAACACTCTGGCGGTGGCGCGCTAGGGGAGGAAATGTGTCA TTTCGCGGCATGACGTGATATAACACCCCCCCAAGATCAGGCTTTCCATA CTAAATGCTACTTGTATGTAAAATCGTTTCGAGACAACACTTTTTTTCTT TTTTTGAACACGTATGATCTCTCTGTGTCCTGAGGAAGGCATTCCCGGTT TTATTTTTCGAAATTCCACAAAACTGACGTAGTTTGTGGCTAATGATAGC GGTAAAGTTCTAAACAAGGGCCAAATCCCTACTTTATCTAAATCAAATTG GAGAAAGCCCCAAAGTCGGGACCCCAAAAAACACGACCCCCTTTTTTTTT TTTCAGCATAATCATAGATGACCTTCATGGGGTCCAAGGGAAGTATTTAC AAAAAACGTTTTCTCACGTACGTACACAAACTAGCGTAGTTTCGGCTAAT TGTTACTTTCAAGTCCCCAAAAAGACCCGATTCAATCGTATCTTCTTCGG TCTTTCTTGGGTATTCCCTTGTAGTTTCTTTCTGTTTGTTGGACCTTCCT AGGGCTCAGCACTTTTTGTGTTCACGGGCTAGATTGTGGCGATGAGCTAA TGTGAGAATCAACAACTAAATTCAAGTAATTCGTGGTATATCTAGGACTT CACGACACTAAAGCGCGTTTTCTCACGCGGTTTTATGAGTTAGACTCTTG AATTTTGCACCAATATTCTATGGGTCCCTACGCAACTTTAGATGATTTTT TTTTTCATTTTGTTTTGTTCGCCAGATATTCGGGGTCCCAGGTGACCAAA ATGGTCCCAAAATACCTTCATACTAAGATATCTATTGAATAAAAAATAAT GATAATAAAAAAAAGTCATCGGAAGTTGCGCAGGGACCCATAGAATATTA TGCGTGCAAAATTTCAAGGTCTAACTCGTGAAAACCGCATGAGAAAAGGA TGTTGACTACATTTATATCTTCTTCCGTGAACCAGCCTGTACGTGTTGCA CATCTGTCCTTTTTTGGAGGTAGCGGCTGTGTCAGCTCCGCAAACAGCGT TTGAGCAACAAACTTCCTGCACACTTCTGCACACTTGAGTGCTGCTCTCC GGATTCTGGTCGGAATTCGCTCAAACAAAGTGATGTGTATTCTGCGTGAT ACCAGCTTTCTCCGGAGCTAGCACATGTGTACAGCCGGGGTCTACACGTT GTGCTGTGGTCAGTTAAGCAAACATCGGTCGCCCCGGTGGACTAGTGGTC CCCTCGTTGGCCACTAGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAA TGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAATCAGAT TCGGCTTCGCCGACGAGGGTAGGGACCGCGGATCCCTGCTCGCGAGAAAA AATCTCACGCATATACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGT TGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGAA CCGCAAGGTGCAGACTAGTGTGCCAGAGAATATGGGATGGCAACACACTA AAGTGCACCATGTGCTCCCGGAATACACAGCAAACACCTCTGTCTCGTAT TCTAGGTCTCGTTCGTTTGTGAGCCGCGTTTTTGATCTATTGGCCGGAAG GAAAGTGTTTTTTATTTTCCTTCCCGTTTCGGAAGAATAAAACTGGAATC CAAAACGTGGTGCGGGCGGATGGATTGTTGACCTATCAGTGACATATTCT GAGTTTGCCTTTTGCTTTTTGCTTTTTGAATGGGCCCACAACGCGTTGAC AAGAGCCACCCTGACAACATCTCTCATCTCTCACGTGATTTTTTTTTTTT CTCTCAGACTGCAATAATACAGCAGTAATCGTCTTTGCCAGGCTCAGCGG TCTGCTTTGCCATGGTCTGTCTTGGTTCTATCCTCCGGTTGGGGTTATGA TTTGTCTTGGTTTGTTTGTTTCTAACTCATGCTTTTTTTCGATCCTGTGA TGTTGTATTTCTGTATTTTTGGTCCTTTGGCCACAACAGAAGGTACCCCA AGGGCACTACAAGTACGATTATGTTGAATCTCTGACTTTTGCCTGGGTGA CCACCGTTTACTTGTAATACGAAGTACTTCCTCTTGATCTTTGATATTCC TCCTGGCATAGCACGATTTGTGTCTGGTTTGTCACCACGGGCTACACTTT GGTGGTGAAGTAAGGGGTAAGAATCACCATAACAGACAATATTTCGCGTG CGAACCGAAAAGGTCCTGTTCTCAACTCCTGATTGGACAAGACCTCGGGA ACCGGTTTTGGTTCTCTTTTTCACGACAAGATAGTTCCCGCCTGCCGCGC AGCCGCGCGCAGCGGCCCAGACTGCTGTTGTGTCTGTTGCGGCTGCCGTT GTGTGTTTGAAGTTCTCCTCCGCGTCCTTTGGGTTAGGGTTGGGTTGGGT CGGGTTAGGTCGGTCGGGGTCCATCGGGTTAGAGTAAGGGAAAAGTGGGA CGCAGTTTCCTGATTGGTCAATACCCCCTGGGGCGAAACCTTAGGAAGTT CCTTGAATTAAAGTTGGTGACATCCAAGGTCGGTGGGGGTAAGCGGAACC AAAAGGATCCCACGGGGTATTGACCAATCAGGAAACTGCGTGCCACCTTT CCCTTTCTTTCGGTCGGGCGGGTCTGCGAAACACAAAAAGCCTTTAAAGA AAAGCGCAAAAAGAAAAGTTGGTACGCTGCCGCTCGAAGTTACCTCCATT TTCCACGTACTCCGGGCTAAATACACTCGAAGTGTTTGAAGTAATACACA CGAGACATTCATCCCATTGTGGAATTTTTGCCCTAAAACCCTCACAGCAA CATGCAAACCCAACAAATTTACCGGTACATTCGCACTCCGTAATCCGTGC TCGGCACGTACGTACCGAACAAGCAGATTTTTCCCGTAGGTACACCACTG ACCTCACGTGGACCGATTTACTGTACGATGTGATCCGGATATCATACTCG TACATAATTCGAAGTACATGTTGTATATATATCCTGCACAATAGCAAATC CATCGGCAGTCTTCGTAGAATATAAAGGTATGTGCGTTACGGTTCCATAG CTTGCAAACCCAAGCTTTCCGTGCGCCGCCAAACGCTCTCGTTACCGCAC CGTGCAGTGGCGAACAACATCGTCACGGTCGGAAGCGAGGCTCGCAGCGA GATCCTGGCCTCACTCCTCACGGCGACAACCACCAGGCGAAGCAAGCGGG GCTTCGTGACGCACACGGGAGATTTTAACGGCGTTCCCGTCTCAATCATC TTGATAAACATGGGGTAAAAGTGATTAGCCTGGTCCAATTGAACTCCTCC CTCCACACTTGCTGCTGTAGAGTCGATCCCAGGTCACCTTGGAGCTCCTT CGATGAGAAAAAATAGCATCTGCAACACGGGAGATCGCCCATACACATTT CCATCGTCTCGAGTTGCAATTTCACCGCATTGAAAAGGTGTTCTAAATCA ATCAGGAGACTGCTTGCCGCCTTTCCCTTTCTCGAACAGTATTTTTTTCA ATCGAGAGATCGATCCCTCGAGGGAATGCCACACAGACCTCTCGGAATCC TTTCACCCGCTCGATGTTCTACGAAAGGTCAAGTTTGTCACCCAGGATTC GAGACCTTGGCTCGTATGTATGGCAATGCAATCTCTCCTGCTCGGGGTCT CATACGCACACGAGGAATCTGATCTAATTTTATTTGTGTGAACGGAGGGT AGCCTTCAGCAGTACTACTCCCATACATAGTGTCCATCAAGGATGGATAC ACAATGCGTACCAGGGTGTGATGGTTTGTTCCTCTGCTACAGCTGCTACA GCAAAGATTTTCGTGGGAAGCGCACTTTTCTGATTGGTCAGTTCTCCGCA CCACAGGTATCCCAACATGGACTTCCTCGTGCGGGAAGTGAGGGCCGTCA CAAACGGCCCGCTTCACATTGTCCGCCTGGGGTCGTGCGCCGGCCTTCGC CCTGACCTTCCTGTCGGCACCGTGGCGGTCGCAAGCGAGGGCTCGATTTT CATCGGCCAAAATCCGGACGCTTGGGCGCCAGCAGTAGCGACGATGACGA AGACGACGACGATCGGAGATGGTTCTTCTGCTGCTGCCCATCAGCGAGGA GAGCCGTACGTGTTTTACGGGGTGGCCCCAGCGGACAAGGGATTGTCCGA GGCGTTGCTGCAGGAGCTCAAGCGCTCACTAGGAGGGGAGATTGACAAGG CGGGCGAGGCGGGGGGCGACAGCGGGGCGACCGCCGTGGTTGGTTGTTTG AACGCCTCAGCGGATAGTTTCTACAGCAGCCAAGGTGTGTGAGGGGGGGG GGGGGGGGCTAGTCTTGCCTAGTGGTCGATGCCGTGTTTTATTTACACAG CACGTAGAAGCTCTTCGACTGGTCTGGACTATGGAATACGATGTACAGCA GTGCATACTATTGAAGAAAAAACGTCACAGTTTGCACTCGTAACAACTGT TGTCTTGGCAACGTCGCCATCTAAGGTCGCCTGGATCCAAGCTTTGAGGA CCGCAACGAGGACCTCGTGAAAACTTTGCTAGCTCGGCACCCTGATGCGG GGACCTTCGAGATGGAGACGTTTCAGCTGCTGCATCTTGCTCGACTCTGT CGAAAGAGCACGATACACGCGTCGGCAGCAAGTATCGTGGTGAGAGAAAA ATCTCAGCAGTGAAACATACGCAGGGTGTGACTCTCCATTACAAAGTACT CGAAGTAGTTGTTACAGACGTTTATCAGCGAGGAAGGAGTGGGCACTACT GCTGTAGCTTCATGTATCCACTTGTTTGTGCGTCTCCCCCATAAGGGAAG TGAAACAACAAGGTGGGGTTGTGGATGGGAAGAAACCGATAGGAAGGCTA CATGTGTGCAGGCAGCGTTCGTCAAGACACGCAGGACTTGGATGGGTTGT TCCGGGCTTGGGGATTTCCATGTGTGTCACCTACGTATCATACGGCTTGA ATCGTTTACCTCGCCCCCAACACTCCACCCCCGACCGCCCCTCTTGTACA TACACGTGCACCTTTTTGTCGTGCTGACGCCTTTTTCGATTTTAGCTCGC CAATCGAATTGCGGACGATGCAATCGCAATCGACAGGATCTCGCAAATCG AGCGCGCGGCGGGAGAGGCCGCTTTGCGAGCTGTCACGTCCTTCGGTGGC GCCTGAGACGCTCTGTTTTACTACTGCCCGCTCCTTGCGGGAAGGTCGGG TCGCCATGGTGGTCACCGATTCGGAGCGCGCTGCTCGGCGATCGTGCGGC ATGGATCTGCGCCACCACGTTTCCAGTCGTGGCCCCCACCTCAGGGTACC GCCGCGTGCGGCTCCGTCGCCTCCTCGCAGTGGCATGTGCTTCGTACGCG GGGCCACGGTGGTGGCCATCCAAAGCCAGGGGCAGAATTAGCGAACGAAC ACCTCACCACCAAATGACAGCTTTCCTCCCCAGGAGCGAGCAGTAACACA ACTATTGCCCCTCTGCTCGTTTCCCCCCGACTGCCCCGGACCCAACGTGA ACGTGGTGACCCTGTCAAATACGGAGTATTTTGGGCGATGCACTTCTGCT GTGACGACGAGATGCTCGTGCTATCGCAGCTGCATAGGAATAGGGCGGGT GTTTTCATGGTTGCCCTCTTGCAGGTGCGTTTAGGAGGTTCTCCCCCCTC TTCGCCCGTTGTTTGGTACTCACGTTTTCAGTGTACGAAGTAGTTTATTC TCATCACCGTAGGCTGTCTCACATATACGTGTGAAGAAAAGCATCTTAGC TTCTCCTCCGAGTACTACTGCTGTACCTGTTTTTTTTACTGCGGAGCACT AGACAAGGTGAGGAGGAGAGGGAAGACAAGAAAGAAGGACGAGTATATCG ATTGACCACAGCTGGTCGTTTGTCCCATGCCTCGTGATGATTTCACTGTT GTTTTACAATTGTGGCCAAGGGGAGAGAGAAGTGAAGACTTGGCACCTGA GGGTACGCGACAACAGCGCGTGTAAAAGCACATTGGATTGGTTCCGTCCA TCATAGACATGAAGTGCGGCGAGCGACTGGCGATTGCTGGCGGTATATTT TGAGACCTTGAAGAAAGGGCACTGGATGGTAGTCGGGGAGATCCGTGTGT GCCGCGTGAGATTGAGATGACCCATGTGAAGTCAGTCGCTGCTGCTGTGT GCAGGAGGTACGCTCAGGGGCTCATACGGAAGCCCGAGGAGTCTTCTTGC GGCTCCTCCATGTCCATCTTGCCGTTTCAGGATTATCGAACGTTTGAGAT GGTTAGTATCATATCATAGGGCGCAGTTCTTTTGTGAACTGAAGATTGTC GGGAAACATGGCCACCGGTGGTAGGTGCGTTCGGTGGTCAAGATAAAACT CCCAAAAAAGCAATTTGTCGGAAAGGTGTACCACAGGAGCTCGTACAAGA TTCAATTTTTTGCGTCAATTTTTCCAACACCTAAATGCAGTATCCAGGTG CCTAAGTGCCACAGCAAATTTACGCACACCACCGGTAGCACTCGCTGCTT GTGTTTTAGATCGTTCAGGTGTGCCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:279660..287987+

>mRNA_P-littoralis_Contig7.61.3 ID=mRNA_P-littoralis_Contig7.61.3|Name=mRNA_P-littoralis_Contig7.61.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1221bp|location=Sequence derived from alignment at P-littoralis_Contig7:279660..287987+ (Pylaiella littoralis U1_48)
ATGAGTGCATCGAATCAATGTGCCCCGTATCTTCTCCATGCAAATGCGGT
TCCACTTACGGCTGACAGGAGGGTCCTGCACCTGGAATTGGGTGAAGGCG
ACGTGGCGAACAACATCGTCACGGTCGGAAGCGAGGCTCGCAGCGAGATC
CTGGCCTCACTCCTCACGGCGACAACCACCAGGCGAAGCAAGCGGGGCTT
CGTGACGCACACGGGAGATTTTAACGGCGTTCCCGTCTCAATCATCTTGA
TAAACATGGGGTATCCCAACATGGACTTCCTCGTGCGGGAAGTGAGGGCC
GTCACAAACGGCCCGCTTCACATTGTCCGCCTGGGGTCGTGCGCCGGCCT
TCGCCCTGACCTTCCTGTCGGCACCGTGGCGGTCGCAAGCGAGGGCTCGA
TTTTCATCGGCCAAAATCCGGACGCTTGGGCGCCAGCAGTAGCGACGATG
ACGAAGACGACGACGATCGGAGATGGTTCTTCTGCTGCTGCCCATCAGCG
AGGAGAGCCGTACGTGTTTTACGGGGTGGCCCCAGCGGACAAGGGATTGT
CCGAGGCGTTGCTGCAGGAGCTCAAGCGCTCACTAGGAGGGGAGATTGAC
AAGGCGGGCGAGGCGGGGGGCGACAGCGGGGCGACCGCCGTGGTTGGTTG
TTTGAACGCCTCAGCGGATAGTTTCTACAGCAGCCAAGGTCGCCTGGATC
CAAGCTTTGAGGACCGCAACGAGGACCTCGTGAAAACTTTGCTAGCTCGG
CACCCTGATGCGGGGACCTTCGAGATGGAGACGTTTCAGCTGCTGCATCT
TGCTCGACTCTGTCGAAAGACTCGCCAATCGAATTGCGGACGATGCAATC
GCAATCGACAGGATCTCGCAAATCGAGCGCGCGGCGGGAGAGGCCGCTTT
GCGAGCTGTCACGTCCTTCGGTGGCGCCTGAGACGCTCTGTTTTACTACT
GCCCGCTCCTTGCGGGAAGGTCGGGTCGCCATGGTGGTCACCGATTCGGA
GCGCGCTGCTCGGCGATCGTGCGGCATGGATCTGCGCCACCACGTTTCCA
GTCGTGGCCCCCACCTCAGGGTACCGCCGCGTGCGGCTCCGTCGCCTCCT
CGCAGTGGCATGTGCTTCGTACGCGGGGCCACGGTGGTGGCCATCCAAAG
CCAGGGGCAGAATTAGCGAACGAACACCTCACCACCAAATGACAGCTTTC
CTCCCCAGGAGCGAGCAGTAA
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