mRNA_P-littoralis_Contig7.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.30.1
Unique NamemRNA_P-littoralis_Contig7.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:140667..141451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size785
Hectar predicted targeting categorysignal peptide
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791447.1235487-UTR-P-littoralis_Contig7:140666..1407701680791447.1235487-UTR-P-littoralis_Contig7:140666..140770Pylaiella littoralis U1_48UTRP-littoralis_Contig7 140667..140770 -
1680791447.1481154-UTR-P-littoralis_Contig7:141205..1414511680791447.1481154-UTR-P-littoralis_Contig7:141205..141451Pylaiella littoralis U1_48UTRP-littoralis_Contig7 141206..141451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791447.1350305-CDS-P-littoralis_Contig7:140770..1412051680791447.1350305-CDS-P-littoralis_Contig7:140770..141205Pylaiella littoralis U1_48CDSP-littoralis_Contig7 140771..141205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.30.1prot_P-littoralis_Contig7.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 140771..141205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.30.1

>prot_P-littoralis_Contig7.30.1 ID=prot_P-littoralis_Contig7.30.1|Name=mRNA_P-littoralis_Contig7.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MHGCSDRLVVLITGPFPVAGGGLGLPRRKRTGVGGAAPLLHCTALYCSAV
WGFGRGGCRVRLQAAERNLFRWHTVLRVPYFSRTLWVIELDVWKQEVSTQ
TRPACMLEKVRLSALHTHAKGVSARLHANPKRRKGITSLKTRKY*
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mRNA from alignment at P-littoralis_Contig7:140667..141451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.30.1 ID=mRNA_P-littoralis_Contig7.30.1|Name=mRNA_P-littoralis_Contig7.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=785bp|location=Sequence derived from alignment at P-littoralis_Contig7:140667..141451- (Pylaiella littoralis U1_48)
GTGATTTTGAGGAGGCGGGGGAAGAGCGGGGCTGGGGGAAAGGCGGCGGT
GGCGGCGGGAGTCATCGCGGTCGGACTCTCTCCTCGGACAACGACAGCGA
CGACTTTCAGCCAGTCAAGTCAAAACGAGCGAGAACGTAGCAGGGTGCGG
TAGTGCTGGACGAAAAGGTCGTGATGTTTGGTGCCAGGTATACTTAAGTG
TCACACAAAACAACCAAAGCATAGGTTTGAACGATAGCGGTGAAGCATGC
ATGGTTGCAGTGACCGACTCGTTGTGCTCATCACCGGACCGTTCCCGGTT
GCGGGTGGGGGGCTTGGGCTCCCGAGAAGAAAGCGAACCGGCGTGGGTGG
GGCAGCCCCTCTCCTGCACTGCACTGCACTGTACTGTTCAGCAGTGTGGG
GTTTTGGGAGAGGTGGTTGTCGTGTCCGACTGCAGGCTGCAGAAAGGAAC
TTATTTCGCTGGCACACGGTGCTGCGCGTCCCTTACTTCAGCCGCACTTT
GTGGGTGATTGAATTAGACGTTTGGAAACAAGAAGTGAGCACGCAAACCC
GACCGGCGTGTATGTTGGAGAAGGTCAGACTATCGGCGCTGCATACACAT
GCAAAAGGGGTTTCCGCGAGATTGCACGCGAACCCCAAAAGGCGGAAAGG
CATCACAAGCTTGAAAACAAGGAAATACTGAAAACAATCAGTCCTTTTCA
TTGGCGCGATAAATCGAACGGGCTTCACGAAGAGCTGGGATGGATGCAGG
TGACAACAAAAATAGAAGAAACTGTAGGAGCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:140667..141451-

>mRNA_P-littoralis_Contig7.30.1 ID=mRNA_P-littoralis_Contig7.30.1|Name=mRNA_P-littoralis_Contig7.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig7:140667..141451- (Pylaiella littoralis U1_48)
ATGCATGGTTGCAGTGACCGACTCGTTGTGCTCATCACCGGACCGTTCCC
GGTTGCGGGTGGGGGGCTTGGGCTCCCGAGAAGAAAGCGAACCGGCGTGG
GTGGGGCAGCCCCTCTCCTGCACTGCACTGCACTGTACTGTTCAGCAGTG
TGGGGTTTTGGGAGAGGTGGTTGTCGTGTCCGACTGCAGGCTGCAGAAAG
GAACTTATTTCGCTGGCACACGGTGCTGCGCGTCCCTTACTTCAGCCGCA
CTTTGTGGGTGATTGAATTAGACGTTTGGAAACAAGAAGTGAGCACGCAA
ACCCGACCGGCGTGTATGTTGGAGAAGGTCAGACTATCGGCGCTGCATAC
ACATGCAAAAGGGGTTTCCGCGAGATTGCACGCGAACCCCAAAAGGCGGA
AAGGCATCACAAGCTTGAAAACAAGGAAATACTGA
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