mRNA_P-littoralis_Contig699.4.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig699.4.3
Unique NamemRNA_P-littoralis_Contig699.4.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig699.4.3 vs. uniprot
Match: A0A6H5LC46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC46_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 7.170e-85
Identity = 280/647 (43.28%), Postives = 312/647 (48.22%), Query Frame = 3 
Query: 2307 PSFDPTRMAARPAKA--TAEARREVEEVEEVGSDDYDXXXXNGFCHSSSNAYDITD-DWAT-----GGDGXXXXXXXXXXXXXDGVVDYEDQLLGEQGHGDAAAASRIQADTQE-----------QPSSGSGRLMGE--ENTKTAAAGTMTSAGMGGRKTVEVRPEKGGARAGP-SDRLETPLGVRTSAGXXXXXXXDLALSPFTAAQNPQEHGSADGGLEPPATSVATAALETPRSEK-----HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGRGXXXXXXXXXXXXXX--------KWRPSFGSAXXXXXXXXGLSPTGAMHAPWAAFSTPSRDRDGTGMPLSASVGGTGIAGSVSTRRKRGSGAG---NGPLGRLLQQVRTRYDGDEARLLSREFPFRQASTPK--TNSENPGGETSNGGXVVGGSGGKSRRDHGDPRTRCSVALDATVLLPAEQVRQDNDDAAAAFFFGEAGLGGGSEGHGCGQSG--GAGGLVCFSCVVHRVVDVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSADSLGGGSEGVANSFRRLLPLEGVRVDALFKQDTRRAVDVCPGSQLRIYDPCCVWRDVEMGREGRAGGGGALLMCTQLCEPYPSCLPALPAP 4121
            PSFDPTR+AARP     TAE  +EVEEVE+VGSDD+      GF +S  NA ++ D DW       GGDG              GVVDYEDQLLGE+G GDAAA +R+    Q            +PS  +G + GE  E  +  A         G  ++ E  P   G  A P S RL T L   T           LA+SP  AA+ PQ     D   E  AT+   AA+ETPR  K                                         S GR     XXXXXXXXXX        KWRPSFGSA         L+  GA HAP AAFSTP+RD                                   NGPLGRLLQQVR R DGDEARLLS EFPFRQ S+    T   N        G     SG KSRRD+GDPRTRCSVALDATV+LPA   R       ++  F E GL GG EG+  GQ+G  GA GLV FSC VH VVDVS                                  SA     G   VA  F  L  LEGVRVD LFKQDTRRAVDV PGSQLRIYDP CVW D E+G EG  G   ALL+CTQLCEPYPSCLPALP+P
Sbjct:   23 PSFDPTRLAARPRPVGETAEELQEVEEVEDVGSDDHGEDDGEGFLNS--NACEVADGDWGASREGRGGDGWREADGGAGG----GVVDYEDQLLGEEGGGDAAA-TRLDVRLQXXXXXXXXXXXLRPSGAAG-IEGENPERARAVAPSGRAMDPTGSGRSAEDEP---GVEAVPDSHRLGT-LSDETPGAEAGTATEALAMSP-AAARRPQRVN--DTAAEAAATA---AAVETPRGAKGRRHEQQAERQGGRHREPNRDRSSPPPRTPVRPPRTMFAPSSFGRSAPTSXXXXXXXXXXXXXXXXGGKWRPSFGSAGGARGGGQSLA-AGATHAPRAAFSTPARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPLGRLLQQVRARCDGDEARLLSGEFPFRQPSSASKSTTGGNNNSHLDGVGVXXXXSGAKSRRDYGDPRTRCSVALDATVMLPAATPR------GSSVGF-EGGLWGGGEGNELGQAGRGGASGLVWFSCFVHHVVDVSLGLGGNRVRPGSRCAT------------------SAAGDAAGWSSVATDFGCLHRLEGVRVDGLFKQDTRRAVDVGPGSQLRIYDPSCVWYDAEVGGEG--GRAEALLVCTQLCEPYPSCLPALPSP 623
[Close]
BLAST of mRNA_P-littoralis_Contig699.4.3 vs. uniprot
Match: D7FXF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF5_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 3.800e-73
Identity = 295/785 (37.58%), Postives = 333/785 (42.42%), Query Frame = 3 
Query: 1827 AGAVMKGPSLTDRPARWGAKGRGLSAWSPLRSPGKAPSASRGGAGGSSSSRMAKSNSNTSFGAVSARKAPGRST---------GSGHPRKEWG----REASRSGGAED---EEGPTFKLTSVFQARAAKPS-SFRPSGAWGKHNHPGGGHRGG------ASQRYPHAQGRQQQHANSSGETPTPSFDPTRMAARPAKATAEARREVEEVEEV---------GSDDYDXXXXNGFCHSSSNAYDITDDWATGGDGXXXXXXXXXXXXXDGVVDYEDQLLGEQGHGDAAAASRIQADTQEQPSSGSGRLMGEENTKTAAAGTMTSAGMGGRKTVEVRPEKGGARAGPSDRLETPLGVRTSAGXXXXXXXDLALSPFTAAQNPQEHGSADGGLEPPATSVATAALETPR----------SEKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGRGXXXXXXXXXXXXXXKWRPSFGSAXXXXXXXXGLSPT-GAMHAPWAAFSTPSRDRDGTGMPLSASVGGTGIAGSVSTRRKRGSGAG-----NGPLGRLLQQVRTRYDGDEARLLSREFPFRQ---ASTPKTNSENPGGETSNGGXVVGGSGGKSRRDHGDPRTRCSVALDATVLLPAEQVRQDNDDAAAAFFFGEAGLGGGSEGHGCGQSGGAG--GLVCFSCVVHRVVDVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSADSLGGGSEGVANSFRRLLPLEGVRVDALFKQDTRRAVDVCPGSQLRIYDPCCVWRDVE 4022
            AGA  +GPSL DRPARW AKG G S WSPLR+PG    A RGG G + +S   K+++++   AVS + +PGRS          G+G PR   G      +SRS G ED   EE PTF+LTSVFQA  A  S S RP G+ G  + PGG  RG       A QR   + G           TP PSFDPTR+AARP     E   E++              GSDDY      GF   SSNA  + D                                     GD  A+               GR  G E  + A  G         R   +    K    A P  R    L   T           LALSP  AA+ PQ     D   E  AT+   AA+ETPR          +E+                                                       KWRPSFGSA        G SP  GAMHAP AAFSTP+RDR                                    NGPLGRLLQQVR R DGDEARLLS EFPFRQ   AS   T+     G   + G      GGKSRRD GDPRTRC VALDATV+LPA   R  +      F   E GL GG EG+  GQ+GG G  GLV FSC VH VVDVS +                                SA     G  GVA  F RL  LEGVRVD +FKQDTRRAVDV PGSQLRIYDPCCVW D E
Sbjct:  540 AGAATRGPSLRDRPARWAAKGGGSSVWSPLRAPG----APRGGTGNAGNSYSNKNSTSSCGNAVSGKNSPGRSVSSRFSPSRRGAGLPRTGRGGGDAAASSRSRGGEDGEGEEAPTFELTSVFQATPASSSVSPRPRGSGG--HTPGGRWRGSQHPVVRAGQRAGCSSGXXXXXXXXXXGTP-PSFDPTRLAARPRPVGGETEEELQXXXXXXXXXXXXXXGSDDYGEDGGEGFL--SSNACQVAD-------------------------------------GDRGASQE-------------GR--GGEGWREADGGAXXXXXXXXRSGEDAPGVK--KEAVPDSRRLGTLPGETPGAEAGTAMEALALSP-AAARRPQRVN--DTAAEATATA---AAVETPRGAKRRHHEQQAERQGGRQSEPIKDRSSPPPRTPVRPPRTMFAPSTFGRSGPTASSAAAASTSASTTGGKWRPSFGSASGARGG--GQSPAAGAMHAPRAAFSTPARDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPLGRLLQQVRARCDGDEARLLSGEFPFRQPSSASKATTSXXXXXGHLDDVGVGXXXXGGKSRRDPGDPRTRCRVALDATVMLPAATPRGPS----VGF---EGGLWGGGEGNELGQAGGGGVTGLVRFSCFVHHVVDVSLSLGGSRVSPGSRRVT------------------SAVGYAAGPSGVATDFGRLHRLEGVRVDGIFKQDTRRAVDVGPGSQLRIYDPCCVWYDAE 1228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig699.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LC46_9PHAE7.170e-8543.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF5_ECTSI3.800e-7337.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig699contigP-littoralis_Contig699:14156..21744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4750
Hectar predicted targeting categoryother localisation
Exons7
Cds size3681
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig699.4.3prot_P-littoralis_Contig699.4.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig699 14608..21127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791445.076589-UTR-P-littoralis_Contig699:14155..146071680791445.076589-UTR-P-littoralis_Contig699:14155..14607Pylaiella littoralis U1_48UTRP-littoralis_Contig699 14156..14607 +
1680791445.1895127-UTR-P-littoralis_Contig699:21127..217441680791445.1895127-UTR-P-littoralis_Contig699:21127..21744Pylaiella littoralis U1_48UTRP-littoralis_Contig699 21128..21744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791445.0861895-CDS-P-littoralis_Contig699:14607..147281680791445.0861895-CDS-P-littoralis_Contig699:14607..14728Pylaiella littoralis U1_48CDSP-littoralis_Contig699 14608..14728 +
1680791445.0953104-CDS-P-littoralis_Contig699:15187..153751680791445.0953104-CDS-P-littoralis_Contig699:15187..15375Pylaiella littoralis U1_48CDSP-littoralis_Contig699 15188..15375 +
1680791445.1102233-CDS-P-littoralis_Contig699:15728..163931680791445.1102233-CDS-P-littoralis_Contig699:15728..16393Pylaiella littoralis U1_48CDSP-littoralis_Contig699 15729..16393 +
1680791445.1278377-CDS-P-littoralis_Contig699:16856..173161680791445.1278377-CDS-P-littoralis_Contig699:16856..17316Pylaiella littoralis U1_48CDSP-littoralis_Contig699 16857..17316 +
1680791445.1409686-CDS-P-littoralis_Contig699:17813..180591680791445.1409686-CDS-P-littoralis_Contig699:17813..18059Pylaiella littoralis U1_48CDSP-littoralis_Contig699 17814..18059 +
1680791445.1510172-CDS-P-littoralis_Contig699:18826..200561680791445.1510172-CDS-P-littoralis_Contig699:18826..20056Pylaiella littoralis U1_48CDSP-littoralis_Contig699 18827..20056 +
1680791445.165984-CDS-P-littoralis_Contig699:20356..211271680791445.165984-CDS-P-littoralis_Contig699:20356..21127Pylaiella littoralis U1_48CDSP-littoralis_Contig699 20357..21127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig699.4.3

>prot_P-littoralis_Contig699.4.3 ID=prot_P-littoralis_Contig699.4.3|Name=mRNA_P-littoralis_Contig699.4.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1227bp
MHRRANRYRHQRHYKEQTRVNNEYDEDWDDDIHYAAAPRTADSSWGGSGG
AAGHDDHASGGGSGVGGEGDRQRGDIVGDGDGAASKPGRSGLDRPKPKRR
YMKVPTMRHLRAMRSALTPAGSFLLGVGDTIHGPNKNQGRSSPPKASGVD
LDPGSTPPSSSASLGEGSSSLLPLGQQTPPSLPPQEENREMEAGVASENP
AAGASDDAVASYRSPPAVAASPSGHGRDDQGRKHVPRSEGNDGSSLVHLR
GSPSGQSKARTTPISAVGEQGQQRALPLPPLHSPTSPIGATAADSVTLGV
AAGVAAGAATSGKRRRPTAAGASQRFGAAAWPKLRRVESPPPKATAATPP
RNSQGGVREPGGCGGDTSRPVGRGGKRPSSASSSSSASSSSLSFCSYHLS
GTPIGSGGSGGNGPTNVGSPRVFPSASSPQDAPRQRQGGEKGKGLPERGD
GGASATGGAGAVMKGPSLTDRPARWGAKGRGLSAWSPLRSPGKAPSASRG
GAGGSSSSRMAKSNSNTSFGAVSARKAPGRSTGSGHPRKEWGREASRSGG
AEDEEGPTFKLTSVFQARAAKPSSFRPSGAWGKHNHPGGGHRGGASQRYP
HAQGRQQQHANSSGETPTPSFDPTRMAARPAKATAEARREVEEVEEVGSD
DYDDDDDNGFCHSSSNAYDITDDWATGGDGGGWETAGGGGGGGDGVVDYE
DQLLGEQGHGDAAAASRIQADTQEQPSSGSGRLMGEENTKTAAAGTMTSA
GMGGRKTVEVRPEKGGARAGPSDRLETPLGVRTSAGAGAGAGADLALSPF
TAAQNPQEHGSADGGLEPPATSVATAALETPRSEKHHHQQQQQQHQQQQN
ESSKDPNPPPRTPVRPPRSSFSTGRGGPAVYSAATTTGGGKWRPSFGSAS
GGGRGGGGLSPTGAMHAPWAAFSTPSRDRDGTGMPLSASVGGTGIAGSVS
TRRKRGSGAGNGPLGRLLQQVRTRYDGDEARLLSREFPFRQASTPKTNSE
NPGGETSNGGGVVGGSGGKSRRDHGDPRTRCSVALDATVLLPAEQVRQDN
DDAAAAFFFGEAGLGGGSEGHGCGQSGGAGGLVCFSCVVHRVVDVSSASS
SSSSGWRSSPSPGSRGASGGGAAAAAAAEGSADSLGGGSEGVANSFRRLL
PLEGVRVDALFKQDTRRAVDVCPGSQLRIYDPCCVWRDVEMGREGRAGGG
GALLMCTQLCEPYPSCLPALPAPPGG*
back to top

mRNA from alignment at P-littoralis_Contig699:14156..21744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig699.4.3 ID=mRNA_P-littoralis_Contig699.4.3|Name=mRNA_P-littoralis_Contig699.4.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=7589bp|location=Sequence derived from alignment at P-littoralis_Contig699:14156..21744+ (Pylaiella littoralis U1_48)
CTTCTTTGCTCCTGTACTCTGTCCTTTACCACCCGCGACACACACAGAGA
ACACAGAAACCCCGGACAAGTTTGCTGCTGAAGCACCCACGTCTATGAAC
GAGGTGTCGGTTTGCCTCCACACGGTAGCTTTTTCAGATCTGGACCAAAA
TACTGGTTTTGATTTTTGAAATCTCCGACACAAAGTTTGACGCACAGAAA
GTACATGCTTTCTTCGAGAGACAAACGAGAGGAGACGACAGAAGAGTCAC
TGTACCGGTAGCCATGTTGTGAGACATTTCGACTACAGGCGCAGTACAAG
GGGTTTCTCCGCTCCGCTGCAGCAGCAACTGCTGCTGCTGTTGCTGTTGC
TGCTACAACAGCCCAGGAACGGGCGATTATTGTGACAGCGATCGTTCTAT
TGTTTGTCACCGGCAGTGCGGCAGCACATTACGGCGACGGTGGTTTGTTG
CGATGCATCGCAGGGCCAACAGGTACCGCCACCAGCGGCATTATAAGGAA
CAGACCCGCGTCAACAATGAATACGACGAGGATTGGGATGATGATATCCA
CTATGCTGCAGCACCCAGGACCGGTGAGACCCTCGGAAAGCTTGACTCGA
AACTGGTCCACGATACAGCAGCAAGAGTACTTCGGTATGTGTTAAAGATC
CACTGATGCAGAGTTACCAAGTACGAAGCGAAGCTTCGAAAGTAGTACAT
ATGCACCTGGACGTACAACCTCGGGTCCCAAGCAAAACCTCCCACACCTA
CTGTACTGCTGTAGAGGTTTCTAGTCGCACTCGTTGCTTTGAAGAAAAAC
TGAAGCTGCCATCTACGAGTGTTTGGGAGATGTATAGAAGTTTCTCCTCT
CTCCACCAGAGTGGCTAAACGTAAGGCCGCTGATCCCAGACATTGCCAGC
TTTCCGAGGGTTCTCTCATGCCGGTCTAGGTATGCACTCCTGGGATCCAA
AATCAAACCCCGTGCTTGCTATAGTAAGCCATTTGTGACTGATGATGAAT
TCGTGATGTCTGTGCGTTCATGCATGTGCAAGCAGACTCGTCTTGGGGCG
GGAGCGGGGGGGCAGCCGGCCACGATGATCACGCTAGCGGCGGGGGCAGC
GGCGTTGGTGGGGAGGGCGACAGGCAGAGAGGAGATATCGTTGGTGACGG
TGACGGTGCCGCTTCGAAACCGGGTCGGAGCGGGCTTGACCGCCCGAAAC
CCAAACGGCGCTACATGAAGGTAAGGTAAAACTAGGTGCTGACGTACTTC
GTGTCTAGTCTTTGACCACGGCCGCTGTAGACTTCATCTGATGTGTAGAA
ACCATCCACGCAAGATTCGAGCTCGACGAAGTACAGCTTGCGGACTATGG
TGGCGGGGCCTGATTGGCCTGACAAGTTCGTTTACTTCTGTATACAAACT
TCGTGGTTGCTATCGAGATTCCTTCATCCACAAGCACCTGTTAGGACAGC
ACGAGCGGTCAAATCTAGTAAGTTGTACACAGAGTCGAATGCGAAAGTAA
CACAGCAGTATTTTGCCCAATCTTTGCCGCGACCCTCCCTCCTTTCCTCC
CTTACACACGACGGTCATTTTAGGTACCAACCATGAGGCACCTGCGGGCG
ATGAGATCGGCTCTCACCCCTGCGGGCAGCTTTCTGCTGGGCGTAGGTGA
CACCATTCACGGTCCCAACAAAAACCAAGGCCGCTCATCTCCCCCCAAAG
CAAGTGGCGTGGACTTAGATCCCGGCAGCACGCCGCCGTCATCATCAGCG
TCCTTAGGGGAGGGGAGCAGTAGCTTGCTTCCCCTGGGACAGCAAACGCC
TCCGTCACTGCCCCCTCAAGAAGAAAACCGGGAGATGGAAGCGGGCGTTG
CGAGCGAGAACCCGGCTGCAGGTGCTTCTGATGATGCGGTCGCGTCATAT
CGGTCGCCTCCCGCTGTCGCCGCCTCGCCTTCGGGGCATGGGAGGGACGA
TCAGGGCAGAAAACACGTGCCTAGATCGGAGGGAAACGACGGGAGCAGTC
TCGTCCACTTGCGGGGCTCACCTAGCGGTCAATCGAAAGCACGAACAACG
CCAATTTCTGCTGTCGGCGAGCAGGGGCAGCAGAGAGCGTTGCCGCTGCC
GCCGCTGCATTCTCCAACGTCCCCGATAGGAGCAACCGCTGCCGATAGTG
TTACTCTAGGCGTTGCCGCAGGCGTTGCCGCGGGTGCTGCTACCAGCGGG
AAGAGGAGAAGGCCGACGGCGGCGGGAGCCAGCCAGAGGTTAGTCACACG
GCGTACGCACGACGTGTCACCACGGCAGCCTTAGACAGTGCTTCGAAGTA
CGTACTTTCTTGTCTTGAACGAAACGATGCAGCAGGCTGATATCTTTAAA
ACGTCTCATGTGTTCATCCTGTGTTGCATTCCACGCAGAACCTTCACCTC
GGTTCATGCCAGGTATGCTTGAGAGGGGCATGGGGCATATGCCTGAAGAG
CTTCTTTTTTCGGCATTTAAAGTGTGGCCTTTTTTTGCGGCCGGCTCCCC
TCGGGTTTTTGCATTTTTCGCGAGCGTCACTGATCTATTGAAACTCTGGT
TTGATATGCTCTGCTACCCTCGCATCCCCCCCCCCCCCCCCCCCCCGCGC
GCCAATAACACTGATCCCAACCACCGCACTGCATGCTATCGTCATTTCGT
ATCGTTCTCCTTGTTCGACTCTGCGCTTCCGGTTTTCTTTTTGTGATGCA
GGTTCGGAGCCGCGGCCTGGCCGAAGCTTCGGAGGGTGGAGTCCCCGCCG
CCAAAAGCAACAGCAGCAACACCTCCAAGAAACTCACAGGGAGGCGTTCG
CGAGCCGGGAGGCTGCGGGGGGGATACAAGTCGGCCGGTTGGCAGAGGAG
GAAAGCGACCTTCCAGCGCAAGCTCCTCCTCCTCTGCCTCGTCTTCTTCT
CTTTCTTTTTGCTCGTACCACCTTTCCGGTACACCGATCGGCAGCGGCGG
CAGCGGCGGCAACGGTCCGACCAATGTCGGGTCGCCGCGCGTTTTTCCTT
CGGCGTCCTCTCCACAAGATGCTCCTCGACAAAGGCAGGGCGGGGAAAAG
GGCAAGGGCCTACCTGAGCGCGGTGACGGCGGTGCCAGTGCTACTGGCGG
TGCCGGGGCAGTCATGAAAGGCCCTTCCCTCACGGACAGGCCTGCTAGAT
GGGGTGCCAAGGTGCGCCCGCCCCCGCGGCGTACACCAGAGGAGTCTGCC
GTTTTTCGCGCGCAAACCAAACGGCCTTTAGAGGAAGCACTAAACTTTGT
AACTATGTGCTAGAAGTATCGGTCTCTTGCCCTAAGGCATAGGCTTTATC
GACTATTTCTTGTATACGCACGAGTAACGCACACTATCACGCATAACCTT
CGGAGCTCCTTTCTTCTTTTTTTTGTTGTTGTTTGCTGTAGAAGTGTCGT
TCGCTGTGCGCGCTTGTGTTGTCTCGAACGTCACAGCAGCATTACCTGCT
TGCGTTTTTTGGGTTGCCCCAGAGACGGTCCCCTCCTCAACCCCGTTGCG
GGCTGAAAACATGTTTCCGTCGCGTGAGCCGTGCTTTCGAACACCCCCTC
CAACGTCTCGGAATAGATACACTGGTGCTGGTGCCTTACCGTGATGACAA
TGGGTTGCACTGCCGTTGCTTCATTCGTTCCTGCCCCCCACATCTGAACC
TGAACCAGGGCCGTGGGTTGAGCGCGTGGTCGCCGCTTCGCTCCCCCGGG
AAGGCCCCAAGCGCTTCTCGCGGAGGTGCCGGCGGCAGCAGCAGCAGTCG
CATGGCCAAGAGCAACAGCAACACATCTTTCGGTGCCGTCTCTGCGAGGA
AGGCGCCCGGAAGGTCGACAGGGAGCGGACATCCTAGAAAAGAGTGGGGC
AGAGAGGCATCGCGATCGGGGGGAGCAGAGGACGAAGAAGGCCCCACTTT
CAAGGTACGTACTGCTGTACCGCCATTTCATCTGTGTGCCTTGGAGATAT
GAGCAGCAGCGAGGCCAACCTCTTGAGAACCCTTTTCTGGCGGCTGCTGC
CTCGGCATGATTTCCCTGTTACCTCCAACGGGGTCCTGCCTCCTCCTGGG
GGCCGGTGACCCCGACTGTATTTTCTTCGATTTTTGTCATGTCGGGATAT
ATGTATGGTGTTTCCCTTCACCAGCCGTTATCCACATTCTGCGGTAAATC
GGAGTCATTTGCTGCCCACGAGCGGTGTCCCCCAAACGGCTCTAATCCAC
CATGGTGTTTGATGTGTTTGACGAAGTCAAGATGCCCGATCTGTTGCCAA
GATGAAAGGGTCTGTTTCGCCTCCAGAGCCGTGTGCAGGAGGGTGCAAGC
GGATTGCTTACGCACGATCTCTGACAATTTGTAACGGTCAAACCCAAAGC
GGAGGCATGATTTGGTTGACGCCTGGGCTGGTGGGTTTTGCCAAGATGAA
AGGGTCTGTTTCACCTCCAGAGCCGTGTGCAGGAGGGTGCAAGCGGATTG
CTTACGCACGATCTCTGACAATCTGTAACGATCAAACCCAAAGCGGAAGC
ATGATTTGGTTGACGCCTGGGCGGGTGGGAGGTTATTCCTAGTGTCAGTC
TCGCTTTTTGTCCAGCCCAACCCAACATATGATTTTGCTTTCGATTCAAG
GCTGCTGATTGGTTGCTCTCACCCACTACCCTCCTGTTGACAAACCGTAT
AAAACCAAATCTGCGCCCCAGCTCACATCAGTGTTTCAGGCAAGAGCGGC
CAAGCCATCGTCTTTCCGGCCCAGCGGTGCATGGGGGAAGCACAATCACC
CTGGAGGAGGACACCGCGGCGGGGCTTCACAGAGGTATCCGCACGCCCAA
GGCAGGCAGCAGCAGCACGCCAACTCCTCTGGTGAAACTCCCACGCCGTC
CTTCGACCCCACCCGCATGGCAGCAAGACCGGCCAAGGCCACGGCAGAAG
CGAGGAGGGAAGTTGAGGAGGTGGAGGAGGTCGGTTCCGACGACTATGAC
GACGACGACGACAACGGTTTTTGCCACAGCAGTAGCAACGCTTACGACAT
CACCGATGATTGGGCCACTGGAGGGGATGGTGGTGGCTGGGAGACGGCAG
GTGGCGGTGGCGGTGGCGGTGACGGTGTTGTCGATTACGAGGACCAATTA
TTGGGGGAGCAAGGACACGGGGATGCCGCCGCCGCCAGCAGGATACAGGC
GGACACGCAGGAGCAGCCATCGTCCGGTAGCGGCAGGCTCATGGGGGAAG
AGAACACGAAGACTGCGGCTGCTGGCACAATGACGTCAGCGGGAATGGGT
GGTAGAAAGACGGTAGAGGTTCGGCCCGAAAAAGGAGGAGCTCGTGCAGG
CCCCTCGGACCGATTGGAAACCCCCTTGGGTGTCAGAACTAGCGCTGGAG
CTGGAGCTGGAGCTGGAGCTGATCTTGCATTGTCGCCTTTCACCGCGGCC
CAGAATCCACAAGAGCACGGCTCTGCCGATGGCGGCCTCGAACCACCAGC
GACGAGTGTAGCAACAGCAGCATTGGAAACTCCGCGAAGTGAGAAACATC
ATCATCAGCAGCAGCAGCAGCAACACCAGCAGCAGCAGAACGAATCCAGC
AAGGATCCAAACCCCCCGCCCCGCACTCCCGTTCGCCCACCGCGATCGTC
ATTTTCCACGGGGCGTGGCGGGCCTGCCGTTTACTCCGCTGCTACTACCA
CCGGCGGCGGCAAATGGCGGCCATCCTTCGGCAGTGCAAGCGGTGGTGGT
AGAGGGGGGGGAGGGCTGTCCCCGACGGGCGCGATGCACGCGCCTTGGGC
GGCGTTCTCGACGCCCTCAAGGGATAGGGATGGGACCGGGATGCCGCTGT
CGGCGTCTGTAGGCGGGACGGGAATTGCTGGGTCGGTTTCGACCCGTCGC
AAAAGAGGAAGCGGAGCGGGGAATGGACCGTTGGGCCGGCTTCTGCAGCA
GGTAACTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGTGCTACTTCTTTTT
TTTTGGTTCGTTGTGTTTCTATGAAGTCCTTTTTTGCCCTCTCTCAAAGT
TTCAGTCCTTCTCTCTGTTTCTGTTGTCGGTGTACCGTGGTCGTGTGCAG
GTGGTCGGGCAAAAACAAAATGTGCCGATACCACTCTGACGACATCACCA
CTCTTGAGCTAGTCACACCGTGTAGACGATAGCCCTCTTTGCTGTTTGTT
GCTGCTTGATTTTTCTACAATGAACCGAAACGGCCGGCGCTTGCATCGCA
GGTGAGAACGCGTTACGACGGTGACGAGGCACGCCTCCTCTCGAGGGAGT
TCCCATTCCGCCAGGCGTCGACGCCGAAGACGAATAGTGAAAATCCCGGC
GGTGAGACCTCCAACGGGGGCGGCGTCGTAGGTGGGAGCGGAGGGAAGAG
CCGGAGAGATCACGGCGACCCGCGGACGCGCTGTAGCGTGGCGCTAGACG
CAACAGTGCTGCTACCCGCGGAGCAGGTCCGACAGGATAATGATGATGCG
GCGGCCGCGTTTTTTTTCGGAGAGGCGGGCCTCGGGGGTGGCAGCGAGGG
ACATGGTTGTGGCCAGAGTGGGGGTGCGGGCGGGCTGGTGTGCTTTTCGT
GCGTGGTTCATCGTGTTGTCGACGTGTCTTCGGCCTCCAGCAGCAGCAGC
AGCGGTTGGCGTTCTAGTCCTAGTCCCGGCAGTCGTGGTGCTAGTGGTGG
TGGTGCTGCTGCTGCTGCTGCTGCCGAAGGCTCCGCCGACAGCCTGGGTG
GGGGTTCGGAGGGTGTCGCGAATAGTTTTCGCCGACTCCTCCCGTTGGAG
GGCGTCCGCGTGGACGCTCTCTTCAAGCAGGATACCCGAAGGGCCGTGGA
TGTCTGTCCGGGTTCCCAGCTCCGCATCTACGACCCGTGTTGTGTCTGGC
GCGACGTGGAAATGGGAAGGGAAGGCAGAGCAGGAGGAGGAGGAGCACTG
CTGATGTGCACGCAATTGTGCGAGCCCTACCCATCCTGTTTGCCGGCGCT
GCCGGCACCGCCGGGCGGATGATGTTTCCGTGACGGTGGCGATGCGTGCC
GTGGTGGTGATCGGCGGGTGGTGACAATGACGTTGGCCAATCGGCCAGGA
CAACGGCGCAGGGTGATCTGCTGTGGTGGTTGCTGGGTTGTTTTGTATAT
GAAACGTCAGGATGAGGCTGTTTTTGGGTTTACGGTTGTCTTTCATTGTA
CCGAGTTTTGTAGGATCATGGCGGGGGAAGGGGTGTTTTGTGTCCGTTTT
ACCACGTAGCATACCTTGCGTATGACCTTTTAGAGTGCATTGTGGAGTAC
CTGCGTTAATTCCGAGACTGCGTGGTTTTAGTTTATTGGTGCTTTCGCTG
CAGCATATTGCGGCAATCATGGTTGTAAGGGGCATCATACAGGTCCTGGA
TGAGAGTTACCATAGTTTTAGTGAACTATCAATGTTTATACTCACGGTAT
AGGTACAAGACCCGCAAACCTCGTCACTATCGGATTGTTATGTTCGTCTG
TAAAACACTCAACGGTTGATCCCAATTATGTCTTGAGCAGTTGGCGAAGA
TAAATGGAACGCGTTCTTTCGTGTGGGCAAAGCAACGTCGATTCTGCTGA
AAAAAACATTCGAACGACAGTCAACGATGGTTGGGATAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig699:14156..21744+

>mRNA_P-littoralis_Contig699.4.3 ID=mRNA_P-littoralis_Contig699.4.3|Name=mRNA_P-littoralis_Contig699.4.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3681bp|location=Sequence derived from alignment at P-littoralis_Contig699:14156..21744+ (Pylaiella littoralis U1_48)
ATGCATCGCAGGGCCAACAGGTACCGCCACCAGCGGCATTATAAGGAACA
GACCCGCGTCAACAATGAATACGACGAGGATTGGGATGATGATATCCACT
ATGCTGCAGCACCCAGGACCGCAGACTCGTCTTGGGGCGGGAGCGGGGGG
GCAGCCGGCCACGATGATCACGCTAGCGGCGGGGGCAGCGGCGTTGGTGG
GGAGGGCGACAGGCAGAGAGGAGATATCGTTGGTGACGGTGACGGTGCCG
CTTCGAAACCGGGTCGGAGCGGGCTTGACCGCCCGAAACCCAAACGGCGC
TACATGAAGGTACCAACCATGAGGCACCTGCGGGCGATGAGATCGGCTCT
CACCCCTGCGGGCAGCTTTCTGCTGGGCGTAGGTGACACCATTCACGGTC
CCAACAAAAACCAAGGCCGCTCATCTCCCCCCAAAGCAAGTGGCGTGGAC
TTAGATCCCGGCAGCACGCCGCCGTCATCATCAGCGTCCTTAGGGGAGGG
GAGCAGTAGCTTGCTTCCCCTGGGACAGCAAACGCCTCCGTCACTGCCCC
CTCAAGAAGAAAACCGGGAGATGGAAGCGGGCGTTGCGAGCGAGAACCCG
GCTGCAGGTGCTTCTGATGATGCGGTCGCGTCATATCGGTCGCCTCCCGC
TGTCGCCGCCTCGCCTTCGGGGCATGGGAGGGACGATCAGGGCAGAAAAC
ACGTGCCTAGATCGGAGGGAAACGACGGGAGCAGTCTCGTCCACTTGCGG
GGCTCACCTAGCGGTCAATCGAAAGCACGAACAACGCCAATTTCTGCTGT
CGGCGAGCAGGGGCAGCAGAGAGCGTTGCCGCTGCCGCCGCTGCATTCTC
CAACGTCCCCGATAGGAGCAACCGCTGCCGATAGTGTTACTCTAGGCGTT
GCCGCAGGCGTTGCCGCGGGTGCTGCTACCAGCGGGAAGAGGAGAAGGCC
GACGGCGGCGGGAGCCAGCCAGAGGTTCGGAGCCGCGGCCTGGCCGAAGC
TTCGGAGGGTGGAGTCCCCGCCGCCAAAAGCAACAGCAGCAACACCTCCA
AGAAACTCACAGGGAGGCGTTCGCGAGCCGGGAGGCTGCGGGGGGGATAC
AAGTCGGCCGGTTGGCAGAGGAGGAAAGCGACCTTCCAGCGCAAGCTCCT
CCTCCTCTGCCTCGTCTTCTTCTCTTTCTTTTTGCTCGTACCACCTTTCC
GGTACACCGATCGGCAGCGGCGGCAGCGGCGGCAACGGTCCGACCAATGT
CGGGTCGCCGCGCGTTTTTCCTTCGGCGTCCTCTCCACAAGATGCTCCTC
GACAAAGGCAGGGCGGGGAAAAGGGCAAGGGCCTACCTGAGCGCGGTGAC
GGCGGTGCCAGTGCTACTGGCGGTGCCGGGGCAGTCATGAAAGGCCCTTC
CCTCACGGACAGGCCTGCTAGATGGGGTGCCAAGGGCCGTGGGTTGAGCG
CGTGGTCGCCGCTTCGCTCCCCCGGGAAGGCCCCAAGCGCTTCTCGCGGA
GGTGCCGGCGGCAGCAGCAGCAGTCGCATGGCCAAGAGCAACAGCAACAC
ATCTTTCGGTGCCGTCTCTGCGAGGAAGGCGCCCGGAAGGTCGACAGGGA
GCGGACATCCTAGAAAAGAGTGGGGCAGAGAGGCATCGCGATCGGGGGGA
GCAGAGGACGAAGAAGGCCCCACTTTCAAGCTCACATCAGTGTTTCAGGC
AAGAGCGGCCAAGCCATCGTCTTTCCGGCCCAGCGGTGCATGGGGGAAGC
ACAATCACCCTGGAGGAGGACACCGCGGCGGGGCTTCACAGAGGTATCCG
CACGCCCAAGGCAGGCAGCAGCAGCACGCCAACTCCTCTGGTGAAACTCC
CACGCCGTCCTTCGACCCCACCCGCATGGCAGCAAGACCGGCCAAGGCCA
CGGCAGAAGCGAGGAGGGAAGTTGAGGAGGTGGAGGAGGTCGGTTCCGAC
GACTATGACGACGACGACGACAACGGTTTTTGCCACAGCAGTAGCAACGC
TTACGACATCACCGATGATTGGGCCACTGGAGGGGATGGTGGTGGCTGGG
AGACGGCAGGTGGCGGTGGCGGTGGCGGTGACGGTGTTGTCGATTACGAG
GACCAATTATTGGGGGAGCAAGGACACGGGGATGCCGCCGCCGCCAGCAG
GATACAGGCGGACACGCAGGAGCAGCCATCGTCCGGTAGCGGCAGGCTCA
TGGGGGAAGAGAACACGAAGACTGCGGCTGCTGGCACAATGACGTCAGCG
GGAATGGGTGGTAGAAAGACGGTAGAGGTTCGGCCCGAAAAAGGAGGAGC
TCGTGCAGGCCCCTCGGACCGATTGGAAACCCCCTTGGGTGTCAGAACTA
GCGCTGGAGCTGGAGCTGGAGCTGGAGCTGATCTTGCATTGTCGCCTTTC
ACCGCGGCCCAGAATCCACAAGAGCACGGCTCTGCCGATGGCGGCCTCGA
ACCACCAGCGACGAGTGTAGCAACAGCAGCATTGGAAACTCCGCGAAGTG
AGAAACATCATCATCAGCAGCAGCAGCAGCAACACCAGCAGCAGCAGAAC
GAATCCAGCAAGGATCCAAACCCCCCGCCCCGCACTCCCGTTCGCCCACC
GCGATCGTCATTTTCCACGGGGCGTGGCGGGCCTGCCGTTTACTCCGCTG
CTACTACCACCGGCGGCGGCAAATGGCGGCCATCCTTCGGCAGTGCAAGC
GGTGGTGGTAGAGGGGGGGGAGGGCTGTCCCCGACGGGCGCGATGCACGC
GCCTTGGGCGGCGTTCTCGACGCCCTCAAGGGATAGGGATGGGACCGGGA
TGCCGCTGTCGGCGTCTGTAGGCGGGACGGGAATTGCTGGGTCGGTTTCG
ACCCGTCGCAAAAGAGGAAGCGGAGCGGGGAATGGACCGTTGGGCCGGCT
TCTGCAGCAGGTGAGAACGCGTTACGACGGTGACGAGGCACGCCTCCTCT
CGAGGGAGTTCCCATTCCGCCAGGCGTCGACGCCGAAGACGAATAGTGAA
AATCCCGGCGGTGAGACCTCCAACGGGGGCGGCGTCGTAGGTGGGAGCGG
AGGGAAGAGCCGGAGAGATCACGGCGACCCGCGGACGCGCTGTAGCGTGG
CGCTAGACGCAACAGTGCTGCTACCCGCGGAGCAGGTCCGACAGGATAAT
GATGATGCGGCGGCCGCGTTTTTTTTCGGAGAGGCGGGCCTCGGGGGTGG
CAGCGAGGGACATGGTTGTGGCCAGAGTGGGGGTGCGGGCGGGCTGGTGT
GCTTTTCGTGCGTGGTTCATCGTGTTGTCGACGTGTCTTCGGCCTCCAGC
AGCAGCAGCAGCGGTTGGCGTTCTAGTCCTAGTCCCGGCAGTCGTGGTGC
TAGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCCGAAGGCTCCGCCGACA
GCCTGGGTGGGGGTTCGGAGGGTGTCGCGAATAGTTTTCGCCGACTCCTC
CCGTTGGAGGGCGTCCGCGTGGACGCTCTCTTCAAGCAGGATACCCGAAG
GGCCGTGGATGTCTGTCCGGGTTCCCAGCTCCGCATCTACGACCCGTGTT
GTGTCTGGCGCGACGTGGAAATGGGAAGGGAAGGCAGAGCAGGAGGAGGA
GGAGCACTGCTGATGTGCACGCAATTGTGCGAGCCCTACCCATCCTGTTT
GCCGGCGCTGCCGGCACCGCCGGGCGGATGA
back to top