mRNA_P-littoralis_Contig694.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.40.1
Unique NamemRNA_P-littoralis_Contig694.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:140192..141174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.2284548-CDS-P-littoralis_Contig694:140191..1402511680791439.2284548-CDS-P-littoralis_Contig694:140191..140251Pylaiella littoralis U1_48CDSP-littoralis_Contig694 140192..140251 +
1680791439.2385638-CDS-P-littoralis_Contig694:140747..1409931680791439.2385638-CDS-P-littoralis_Contig694:140747..140993Pylaiella littoralis U1_48CDSP-littoralis_Contig694 140748..140993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.2479367-UTR-P-littoralis_Contig694:140993..1411741680791439.2479367-UTR-P-littoralis_Contig694:140993..141174Pylaiella littoralis U1_48UTRP-littoralis_Contig694 140994..141174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.40.1prot_P-littoralis_Contig694.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 140192..140993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.40.1

>prot_P-littoralis_Contig694.40.1 ID=prot_P-littoralis_Contig694.40.1|Name=mRNA_P-littoralis_Contig694.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
ARVFDRERGANIREGSGSSQGGLGRFKHRAVQGGFAALHKRWNNCCKQDS
GRDLKINRLLHAKRQASSSARQQHISSRQALGAPRMSCRSPVVTRPRESP
A*
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mRNA from alignment at P-littoralis_Contig694:140192..141174+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.40.1 ID=mRNA_P-littoralis_Contig694.40.1|Name=mRNA_P-littoralis_Contig694.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=983bp|location=Sequence derived from alignment at P-littoralis_Contig694:140192..141174+ (Pylaiella littoralis U1_48)
GCACGAGTGTTCGACAGAGAGAGAGGTGCAAACATTCGTGAAGGATCTGG
TAGCTCCCAGGTGAGAAGGGGTGAGGTTAAAGGCATTGAAAGGGAACCAT
GACATATGTACCACGCACGCTCCGCCCCGCTCGGATTCCTCTTCGCCAAA
TGATTTTGTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCT
CTCTCTCTCTCTCCGTCCTTCTCTCACTCTCTCCGTCCTTCTCTCACTCG
TTCCCTCACGCATAGACTTCCTGCGCCAGGGGTTCAAAATCTGTTTTTTT
GGCTGTGGGGGGGAAAGGTCAACTTTTTTTCCCCTCTGTTTGATGCAGAC
AAACGTTGTCACATCGTTTGTACCGCGGCTCCGGCATCTTCTGTCACCCG
TGACAGCCGCCCGCGCCACAATCAGCACCAGAACCGGTAGATTACTGTCC
TAGGATGCCCATAGGAACCCTCTATACACGACAGAACCCTCCTACGCACA
CTTCAGGGCGGCCTGGGCCGATTTAAGCACCGTGCAGTCCAGGGAGGATT
CGCAGCGCTGCACAAGAGGTGGAACAACTGCTGTAAACAGGATTCGGGCC
GAGATTTAAAAATAAACAGACTGCTACACGCGAAGAGACAAGCCAGCAGT
TCGGCGCGACAGCAGCACATCTCGTCGCGCCAGGCCTTAGGAGCACCGCG
CATGTCATGTCGTTCGCCAGTGGTCACCAGACCACGTGAAAGCCCAGCAT
AGATTTTCGGAGAGCAGACGGCGGAGAAGCAACGGTACGCCCGTGGAGCG
AAGATAGCGAATGGTCGCTCGAACAACCAAATCAAACAGCGGCAGTGAGG
CAAGGGATCTAACGGTCTAACGGATTGATGACAACATGAGCTCAGGACCG
GCTGGAGCAGCAGACGGAAAAGCCAAGGAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:140192..141174+

>mRNA_P-littoralis_Contig694.40.1 ID=mRNA_P-littoralis_Contig694.40.1|Name=mRNA_P-littoralis_Contig694.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig694:140192..141174+ (Pylaiella littoralis U1_48)
GCACGAGTGTTCGACAGAGAGAGAGGTGCAAACATTCGTGAAGGATCTGG
TAGCTCCCAGGGCGGCCTGGGCCGATTTAAGCACCGTGCAGTCCAGGGAG
GATTCGCAGCGCTGCACAAGAGGTGGAACAACTGCTGTAAACAGGATTCG
GGCCGAGATTTAAAAATAAACAGACTGCTACACGCGAAGAGACAAGCCAG
CAGTTCGGCGCGACAGCAGCACATCTCGTCGCGCCAGGCCTTAGGAGCAC
CGCGCATGTCATGTCGTTCGCCAGTGGTCACCAGACCACGTGAAAGCCCA
GCATAG
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