mRNA_P-littoralis_Contig694.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.33.1
Unique NamemRNA_P-littoralis_Contig694.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:123444..124878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4432.XP_010271200.1
PFAMsLRRNT_2,LRR_1,LRR_4,LRR_8,Pkinase,Pkinase_Tyr
Model size146
Max annot lvl35493|Streptophyta
KEGG koko:K00924
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019199,GO:0019538,GO:0023052,GO:0036211,GO:0038023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Exons2
Evalue0.000821
EggNOG OGsCOG0515@1|root,2QPQ4@2759|Eukaryota,37HPF@33090|Viridiplantae,3G88X@35493|Streptophyta
DescriptionBelongs to the protein kinase superfamily. Ser Thr protein kinase family
Cds size144
COG categoryT
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.1140616-CDS-P-littoralis_Contig694:123443..1235161680791439.1140616-CDS-P-littoralis_Contig694:123443..123516Pylaiella littoralis U1_48CDSP-littoralis_Contig694 123444..123516 +
1680791439.1319838-CDS-P-littoralis_Contig694:124805..1248761680791439.1319838-CDS-P-littoralis_Contig694:124805..124876Pylaiella littoralis U1_48CDSP-littoralis_Contig694 124806..124876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.33.1prot_P-littoralis_Contig694.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 123444..124876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.33.1

>prot_P-littoralis_Contig694.33.1 ID=prot_P-littoralis_Contig694.33.1|Name=mRNA_P-littoralis_Contig694.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
GTIPPELGNLATLEYLELEENELSGPIPPELGKLAALKKLWLGQNQLT
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mRNA from alignment at P-littoralis_Contig694:123444..124878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.33.1 ID=mRNA_P-littoralis_Contig694.33.1|Name=mRNA_P-littoralis_Contig694.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1435bp|location=Sequence derived from alignment at P-littoralis_Contig694:123444..124878+ (Pylaiella littoralis U1_48)
GGCACCATCCCACCAGAGCTGGGGAACCTCGCAACACTGGAGTACCTCGA
GCTTGAGGAAAACGAGCTAAGTGGTGAGGGAGCGTGCATGTTTGTTTTAT
TTTGACTTTTACAAAATGAGTCCTGCACACGCGTGGGTGAGTAGGTGTTC
TAGAAGGTGGGGAAATAACGTTTTATTTTCCCCCTTAATTCGTAATTGCT
CTTTTTTTTACCACAGGGACTATCCCTCCGGAGCTAGGGCAGCTTGGGGC
CCTTCAGTCCCTGCAGCTTTGGGGGAACGCGTTGAGCGGTGAGTCATTGA
AATCAAGGCTTTAATGTTTTCACACCATTGTGTATGGCGGCCAGGATTCC
TGCACACGCAGTTTGCTGGTTTGCCCAAGCCAGAGTTCCTTCAGTGCTGC
GAGCTTTCCCAGCTCCGGTGGGATGGGGCCTGCAAGCGTAAGAGTATATT
CAAGTTATAACGCAGCGGGCGAGAGAAAAAACTATACCGGCTTCTAGAAC
ACCTACTCACCCACAATTCCCCGCTGCGTAGCGAAAGATGTTCCGCGAGT
TCCGAAATTGCGAAATTTCGTACTCGCCTATGCGCGAAATTTCGTACTCG
CCTATGGCATCGACAAGTAGGTGTTCTAGAAGCCGGGGAAATTATATTTT
GTTATTGCCGGCTGAATTCGCATGTTCTCTTCCGCTTGCAGGCACCATCC
CACCAGAGCTGGGGAACCTCGCAGCACTGGAGTACCTCGAGCTTGAGGAA
AACGAGCTTAGTGGTGAGGGAGCGTGCATGTTTGTTTTATTTTGACTTTT
ACAAAATGAGTCCTGCACACGCATGGGTGAGTAGGTGTTCTAGAAGGTGG
GGAAATAACTTTTTATTTTCCCCCTTAATTCGTAATTGCTCTTTTTTTTA
CCACAGGGACTATCCCTCCGGAGCTAGGGCAGCTTGGGGCCCTTCAGTCC
CTGCAGCTTTGGGGGAACGCGTTGAGCGGTGAGTCATTGAAATCAAGGCT
TTAATGTTTTCACACCATTGTGTATGGCGGCCAGGATTCCTGCACACGCA
GTTTGCTGGTTTGCCCAAGCCAGAGTTCCTTCAGTGCTGCGAGCTTTCCC
AGCTCCGGTGGGATGGGGCCTGCAAGCGTAAGAGTATATTCAAGTTATAA
CGCAGCGGGAGAGAGAAAAAACTATACCGGCTTCTAGAACACCTACTCAC
CCACAATTCCCCGCTGCGTAGCGAAAGATGTTCCGCGAGTTCCGAAATTG
CGAAATTTCGTACTCGCCTATGGAATTGTGGGTGAGTAGGTGTTCTACAA
GCGGGAATATTTTTTTCTCTCTCCCGCTGCATTATAATTTGAATATACTC
TTACGCTTGCAGGCCCCATCCCACCGGAGCTGGGAAAGCTCGCAGCACTG
AAGAAACTCTGGCTTGGGCAAAACCAGCTAACTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:123444..124878+

>mRNA_P-littoralis_Contig694.33.1 ID=mRNA_P-littoralis_Contig694.33.1|Name=mRNA_P-littoralis_Contig694.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig694:123444..124878+ (Pylaiella littoralis U1_48)
GGCACCATCCCACCAGAGCTGGGGAACCTCGCAACACTGGAGTACCTCGA
GCTTGAGGAAAACGAGCTAAGTGGCCCCATCCCACCGGAGCTGGGAAAGC
TCGCAGCACTGAAGAAACTCTGGCTTGGGCAAAACCAGCTAACT
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