mRNA_P-littoralis_Contig690.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig690.19.1
Unique NamemRNA_P-littoralis_Contig690.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig690.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig690contigP-littoralis_Contig690:56218..56744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size527
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.841721-UTR-P-littoralis_Contig690:56217..563161680791433.841721-UTR-P-littoralis_Contig690:56217..56316Pylaiella littoralis U1_48UTRP-littoralis_Contig690 56218..56316 +
1680791433.865993-UTR-P-littoralis_Contig690:56667..567441680791433.865993-UTR-P-littoralis_Contig690:56667..56744Pylaiella littoralis U1_48UTRP-littoralis_Contig690 56668..56744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.8537805-CDS-P-littoralis_Contig690:56316..566671680791433.8537805-CDS-P-littoralis_Contig690:56316..56667Pylaiella littoralis U1_48CDSP-littoralis_Contig690 56317..56667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig690.19.1prot_P-littoralis_Contig690.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig690 56317..56667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig690.19.1

>prot_P-littoralis_Contig690.19.1 ID=prot_P-littoralis_Contig690.19.1|Name=mRNA_P-littoralis_Contig690.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MIPVYSFQRWGSLHGLHHPAGYSALSTSPTKQRRHEEVARVSNKEVLEHC
KLFRSCGGVDDVYAVDGGRLVTDVQLRADGIAATALILALCQRDAQIITA
LAPLTPLSKGDWIVST*
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mRNA from alignment at P-littoralis_Contig690:56218..56744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig690.19.1 ID=mRNA_P-littoralis_Contig690.19.1|Name=mRNA_P-littoralis_Contig690.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=527bp|location=Sequence derived from alignment at P-littoralis_Contig690:56218..56744+ (Pylaiella littoralis U1_48)
GCGGTCTGCTGGTCGAAAAACATGATCCTTGGTACTGAAGTACGAATCGG
AACTATGAGATGGTTTTTCCCAATCAAAACTATGAGGTGAGCCGGGAAAA
TGATACCAGTTTATAGCTTTCAGCGATGGGGGAGCCTTCACGGGTTACAC
CACCCCGCGGGTTACAGCGCATTGTCAACTTCACCAACGAAACAGCGGCG
CCATGAAGAGGTTGCCCGCGTCAGCAACAAGGAGGTACTTGAACATTGTA
AATTATTTAGGTCGTGCGGAGGCGTGGATGATGTATATGCCGTAGATGGG
GGTAGGCTTGTCACCGACGTGCAGCTCAGGGCCGACGGAATAGCCGCTAC
TGCCCTGATACTGGCGCTTTGTCAACGAGATGCGCAGATCATCACAGCTC
TGGCGCCATTGACGCCGCTGAGTAAGGGTGACTGGATAGTCTCAACGTGA
CTGGAAAGTCTCGTCGTGTCGCGGGTTTGCAGAGCGTGGAAAGCTAGAGA
TACCAAAATCACTGGGGGGTACACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig690:56218..56744+

>mRNA_P-littoralis_Contig690.19.1 ID=mRNA_P-littoralis_Contig690.19.1|Name=mRNA_P-littoralis_Contig690.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig690:56218..56744+ (Pylaiella littoralis U1_48)
ATGATACCAGTTTATAGCTTTCAGCGATGGGGGAGCCTTCACGGGTTACA
CCACCCCGCGGGTTACAGCGCATTGTCAACTTCACCAACGAAACAGCGGC
GCCATGAAGAGGTTGCCCGCGTCAGCAACAAGGAGGTACTTGAACATTGT
AAATTATTTAGGTCGTGCGGAGGCGTGGATGATGTATATGCCGTAGATGG
GGGTAGGCTTGTCACCGACGTGCAGCTCAGGGCCGACGGAATAGCCGCTA
CTGCCCTGATACTGGCGCTTTGTCAACGAGATGCGCAGATCATCACAGCT
CTGGCGCCATTGACGCCGCTGAGTAAGGGTGACTGGATAGTCTCAACGTG
A
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