mRNA_P-littoralis_Contig69.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.18.1
Unique NamemRNA_P-littoralis_Contig69.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.18.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.550e-58
Identity = 128/238 (53.78%), Postives = 154/238 (64.71%), Query Frame = 2 
Query:  134 MCKSTHPQQSGEPGAAAAAAAGDTPRRPQPEQQSVDTADYTVKSFELKLDQQQEGQHEEILSSDESSGVVVFGCFAAGALVGIVICAPAFVVLLFGAGAAALTKSDSKAGKISRKVGKVSSDIILAGVRIAREFNLKHRLADKTKETAQRVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQAQAPPSAGLVNDGTQLPFGGTADAYETTPSSSEW--KSLPPKTFDA 841
            MCKS+ PQ S E    AA  A + P        S D A     S         E  H+E+++ DE+SG++VFG F AGALVG+VICAPAFVVLLFGAGAAALTKSDSK GK SRKVGKVSSDI+LA  R+ARE+N KH+L DK K  A+  A +V+ +++K GIVD+VKAR  SLW  + +RT PAG+A  QA        V DGTQ+PF G  DAY T  SSS    K   PK+FDA
Sbjct:    1 MCKSSQPQGSSE----AAPVAMEVPTN-----DSYDLAKPCAIS-------DNEQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA 222
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BLAST of mRNA_P-littoralis_Contig69.18.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.110e-37
Identity = 95/200 (47.50%), Postives = 127/200 (63.50%), Query Frame = 2 
Query:  278 LDQQQEGQHEE-ILSSDESSGVVVFGCFAAGALVGIVIC------APAFVVLLFGAGAAALTKSDSKAGKISRKVGKVSSDIILAGVRIAREFNLKHRLADKTKETAQRVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQA-QAPPSAGLVNDGTQLPFGGTADAYET----TPSSSEWKSLPPKTFDA 841
            LD +QE  H+E  L+ DESS ++V G F AGALVG ++C      AP  VVLL GAGAA  TKSDSKAG+ISR+VGK + D+ LA  R+ REFN K++L  K + TAQ  A +V  EV++ GI D VK R +SLW  + +RT PAG+ P +A Q   +  L+ +  QL F   ADA E+    + SS + K++  + FDA
Sbjct:   25 LDTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPPIRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224
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BLAST of mRNA_P-littoralis_Contig69.18.1 vs. uniprot
Match: D8LTP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 8.270e-24
Identity = 91/224 (40.62%), Postives = 114/224 (50.89%), Query Frame = 2 
Query:  257 VKSFELKLDQQQEGQHEE---ILSSDESSGVVVFGCFAAGALVGIVIC------APAFVVLLFGA------------GAAALTKSDSKAGKISRKVGKVSSDIILAGVRIAREFNLKHRLADKTKETAQRVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQ----AQAPPSAGLVNDGTQLPFGGTADAYETTP----SSSEWKSLPPKTFDA 841
             KSFE+  D   E QH     IL  DESS + + G F AGA VG +IC      AP   +LL GA             AA +TKSDSKAG ISR+ G   SD++LA  R  REFN  ++L DK K T Q  A +V  E++K GI D V  R  SLW  + +RT PA + PS+    AQ   +  L  +  Q  F    DA ++ P    SS   K+ P K  DA
Sbjct:   27 AKSFEV--DNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQ-PSKFVHGAQGQDTISLFREEPQPGFDNAGDAPKSAPCSPSSSENEKTAPVKLSDA 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTP8_ECTSI2.550e-5853.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTQ0_ECTSI1.110e-3747.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTP9_ECTSI8.270e-2440.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:100192..104275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2013
Hectar predicted targeting categorysignal anchor
Exons4
Cds size711
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.18.1prot_P-littoralis_Contig69.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 101361..104142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.622148-UTR-P-littoralis_Contig69:100191..1013601680791429.622148-UTR-P-littoralis_Contig69:100191..101360Pylaiella littoralis U1_48UTRP-littoralis_Contig69 100192..101360 -
1680791429.6924992-UTR-P-littoralis_Contig69:104142..1042751680791429.6924992-UTR-P-littoralis_Contig69:104142..104275Pylaiella littoralis U1_48UTRP-littoralis_Contig69 104143..104275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.636087-CDS-P-littoralis_Contig69:101360..1015281680791429.636087-CDS-P-littoralis_Contig69:101360..101528Pylaiella littoralis U1_48CDSP-littoralis_Contig69 101361..101528 -
1680791429.6515522-CDS-P-littoralis_Contig69:101880..1019941680791429.6515522-CDS-P-littoralis_Contig69:101880..101994Pylaiella littoralis U1_48CDSP-littoralis_Contig69 101881..101994 -
1680791429.6680756-CDS-P-littoralis_Contig69:102748..1028531680791429.6680756-CDS-P-littoralis_Contig69:102748..102853Pylaiella littoralis U1_48CDSP-littoralis_Contig69 102749..102853 -
1680791429.6808333-CDS-P-littoralis_Contig69:103818..1041421680791429.6808333-CDS-P-littoralis_Contig69:103818..104142Pylaiella littoralis U1_48CDSP-littoralis_Contig69 103819..104142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.18.1

>prot_P-littoralis_Contig69.18.1 ID=prot_P-littoralis_Contig69.18.1|Name=mRNA_P-littoralis_Contig69.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=237bp
MCKSTHPQQSGEPGAAAAAAAGDTPRRPQPEQQSVDTADYTVKSFELKLD
QQQEGQHEEILSSDESSGVVVFGCFAAGALVGIVICAPAFVVLLFGAGAA
ALTKSDSKAGKISRKVGKVSSDIILAGVRIAREFNLKHRLADKTKETAQR
VASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQAQAPPSAG
LVNDGTQLPFGGTADAYETTPSSSEWKSLPPKTFDA*
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mRNA from alignment at P-littoralis_Contig69:100192..104275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.18.1 ID=mRNA_P-littoralis_Contig69.18.1|Name=mRNA_P-littoralis_Contig69.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4084bp|location=Sequence derived from alignment at P-littoralis_Contig69:100192..104275- (Pylaiella littoralis U1_48)
ACACAACGCACAACTTTTCTTCTCCACTCTCATCAAACACACCAAACAAA
GCACACCCACAGCAGCAACATCAGCAGCAGCAGTAGCAACAACGACAACA
GCAGGAAAGAGAAGCAGTTAAATCGCTGTAACCATGTGCAAGTCCACCCA
CCCGCAGCAGAGCGGTGAGCCAGGCGCTGCTGCTGCGGCGGCAGCGGGGG
ATACGCCAAGGCGGCCCCAACCGGAACAGCAGTCTGTTGACACGGCGGAC
TATACGGTCAAGTCTTTCGAGCTCAAGCTCGACCAACAGCAGGAAGGGCA
ACACGAAGAAATTCTGTCCAGCGATGAGTCCAGCGGCGTCGTCGTGTTTG
GCTGCTTCGCTGCGGGAGCACTGGTAGGAATTGTAATCTGCGCGCCTGCG
TTTGTGGTGCTGCTTTTCGGGGCCGGCGCTGCCGCCTTGACCAAGTCAGA
CAGCAAGGTGCGTGCCCGGAAGGGAGGACCGTTGTCAACCAGCTGTTCAA
CATGGACATATAGAACTACAGCCGTATCTTGTCGCGCTTGGCCGCCGATG
AAAGTTTGCTTAATTTTGCGCGCCCAGAGGTTGCGGCGGTAGAGCTGGCA
GCGTTTGTGAGATATGCAGGGTTTCGGTGTCGATTCAGGTGTCGGGGGGT
GGGTGATTGGATGTTCCGCTGTGAGGTCGGTAATGAAGTCAAAACGACAG
ATGAACCGAACATGTATCGTTCATTGTTCAAGGGAGTCAGAACGCCAGAC
GAAAACGAAATCTCCGCCAGTAATTGCTTCAATAATACAATAGTATCCAC
CCACCAACCGTCCCCCTCCCGTAGGGAGCACACTACTTACTCAGGGGAAG
GGCCGTCGCTGCAACCATTAGCATTAACTATCTTAGTGTGCACTGCTGAT
TTGGTAAACAAACATAGACACGTCCAAAAAGAGGCTAACATACTGCTTTT
TTTAGGACAGTAAGTAAAAGGGGACGTAAAATGGCAAGACTTTCGCTTCT
CCATGACTTTATTATTGTTTTGTGTGTATCTCAAGCATTGGCTGACAGCT
GCTGCAACTCGAATTTTACCCTGCAAGAGCCGCGTAGGCGACGGCTGGGA
TGGCCCGGACTTGCACGCCAACCCTACCCAATTATCGTCTGATGGGACTG
CACTACCGGTACGGGGCGACCTGAATCTGAGCGTGTTTGTTCGGGCCGTC
ATTCATGCCTAGTCTAGACAAGGACAACAGCCGTGGTACATACTGCACCA
GTTTTACGGTCAGGCGGCCCTAAACAATTGTCCTCATCATTTTCCCCAAA
GACTATCGCAGCATCGAGATGTAGCACATACTCATTCCACCAACACCAAC
ACCAACACCAACACCAACACACCCCCTTGTCTTTTGTACTGTTTTTTTTT
TGTGTGTGCGTGCTTGCCGCAGGCCGGCAAAATTTCCCGCAAGGTAGGCA
AGGTGTCATCCGACATTATTCTCGCTGGCGTCAGAATAGCCCGGGAGTTC
AACCTGAAGCACCGCTTGGCCGATAAGGTGAGCGCCGCTATGACCGGCCA
ACGGGTGGCAACGCATGATACGATATCTGGTGTCGGATAGCCTGTTCACT
TCATTCGGAATGATTTGTACAACAATAAATAGTGATCATATGACACGTGA
CCCAACAAATGCTTCATTTTTTGCGCGGCTTGCGTTTGGCCCTTATCTCT
CTTAACGTGACCTCATAGCCGTGATTTCCTCTTTTGTTATTGTACACTGC
CAATATGCGGCGTAATCTTTTACCTTTCGGGGCAATAGGCGGCGTGATAA
TCAACTACGTGTTGTCTTTCGAACACTGTACGGAGCGTTTTAACGTTCTT
TGTTCAAACATGTTTCTCCCCCCCAATTTGGCAGAGGAGTGTTGTATGCA
CCATCAAGCGAGGGTAACGCCAGCAGTGGATCGGTTTGCTAAAAGAAAGA
CACTTTCAGTTATTCCACTGCGTGCACACACCACGTTGTCCGTATCCGTT
CGTATAAAAGTGTACGTTTATTACCTGATGGTTTCATAAGATTTCACTTC
TTCACCGTGACCTTTCACCATAATCTCGATTTGCTTTCTAAAAGTCTTCA
GGTACAAAATGTGGCATTCTTTACGTTTTTCGTGTTTGTGTCAAGAGGTG
TGCAGTCTACTCCTTCACATTTGCCCCTCGTACGTTCAAACCCGGTGTGC
ATGATATTCCACCGCTTATTGTTTTTTGCGGCCCGTCTCATACAACATGA
TTCTACTCCGTTTGTTTTCTGCATATTTCAGACCAAGGAAACTGCGCAAC
GAGTGGCGTCGAGGGTAAGCACCGAGGTGAAAAAGCGCGGCATTGTCGAT
GACGTTAAGGCCAGGACCAAGTCCCTGTGGGCGCACATCCAAGAGGTGAG
AACGGGCAAACAATGGATTCAAGCAGTCTACGAACTCACTGTTAACAATT
GTACAATGTGCACCGGTCGCCGCGGCCCCCGACATTGCTGACCGTTGATT
TAGAAGTCAGACCTAAATTGCCCGCACTTTGTCTTTGGTCCTCTTCTGTG
CGCCTGTGTCGCATTTCGGCCGAAACCCCTTCGTAGAAGAGGCAATATCT
TCCGAGATACACATACGTACACGGGCGCCTAGTTCTTCTAGCGTGCAGTA
CGAGTTCGCCTGCGAATCGTCACACTGGTTGCCCTCCCCCGCCCACGTGC
CCCTTTCGATGCCATGCTTCTGCTGGTGATATCATCACAATTTTCAGCGC
ACCACACCTGCCGGTGAGGCTCCGTCACAAGCTCAGGCGCCACCCTCGGC
TGGTCTGGTCAACGACGGGACGCAGCTCCCTTTTGGCGGCACGGCAGATG
CGTACGAAACTACCCCTTCCTCGTCCGAATGGAAGAGCTTGCCTCCGAAG
ACCTTCGACGCTTGACCGAACAAGTCTCAGAGTAAAAAATCGAATACCGG
ATAGCCTCCCGTACTGGTGTGTACTACACTGTGCCTGTCGGTGTTACTGT
ATTCTGCGTAATGGAGTATCGCGCCCGAAACGATGTGTATGATGGTAAAA
ATAGTTCCAAGGGGTGTGTATTGGGGGCGAGACACGAGATTCTCGCTTTC
TGAGGACCCGCCCATTGTTTTTCCGCTGATCGGTCGACCTTGTGTGTTGT
AGTGGAGAAGAGGGTGTACCACCGCCGCTCAAGTCGTCCTTGGACGCCCG
CACAGCATATCTACCGCGTAAGCCCGTCGGGGTCTTGTTTTGTCTTTATT
TGTGTATATCTTTCGGACAGGTTTTATTTGTGTGCTGTTGGTCGGACTTT
TCTCTTCGACACCAGGTGGTGTGTATAGAGCCCCGTGTATATCGTTTCAG
GGTTGATGTTTTGTTGCGCACACTTCAATCGTTCGAAGTGATACTGCGTA
AGAGAGTTTGTTGTGTTCGCAGTTTGAGCGTGTTATTTGTTTGCCAGTAG
AGCATGCGTTTTCGAGTGGCCACCGAGGACTCTCCTCAGGCCCTGTTGTG
TTTGTGACACAGCGAGACACGAGCTGCTGGCCATGATTGTGCCACGATGA
CTTTTCGTAGGATCCTCGAATCGATGTGTAAAGAATCGTCTTGACTGTAA
AATTAGGGGAATGAACCGCCCGCCGGCGCGCTCGGGCTCCGGGTATATCA
AAAGCAAGCTTGGTGTGACCGGTGGCGGGGGAAGACAATATTTTTAGCAA
GACATAGATTGGCACTGTGTTAACATCTCACGTGATCTCCCCGGTACCCG
GGATCGTATCCGCCCGTTCAAAAACTGCGAGCGCCGCTAAATTATGTCAT
GGGGAGAATACGTTTTCAACACGCCGCCCCTTGATTCCCGGCTACGAACG
GCTAGATACATAGCTGACTCCCATTCCGATGTGCGTGTGCATCATATTAT
TGTAGACATGCCGGTGCGTGGCGCGGGCAACAAGAACTGAGAGTTTTCAT
TCAATGGGTTTGTGTTTACTTAAACTCGTCGATATCGTTGAACCGGCTCC
GAGACCCTCTCCTCAAACACTTGACGGGTCGAGTTGAATTAGTGGTTTTA
CGAACGCCGACGGCATACTGTAGGCTGCCAACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:100192..104275-

>mRNA_P-littoralis_Contig69.18.1 ID=mRNA_P-littoralis_Contig69.18.1|Name=mRNA_P-littoralis_Contig69.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=711bp|location=Sequence derived from alignment at P-littoralis_Contig69:100192..104275- (Pylaiella littoralis U1_48)
ATGTGCAAGTCCACCCACCCGCAGCAGAGCGGTGAGCCAGGCGCTGCTGC
TGCGGCGGCAGCGGGGGATACGCCAAGGCGGCCCCAACCGGAACAGCAGT
CTGTTGACACGGCGGACTATACGGTCAAGTCTTTCGAGCTCAAGCTCGAC
CAACAGCAGGAAGGGCAACACGAAGAAATTCTGTCCAGCGATGAGTCCAG
CGGCGTCGTCGTGTTTGGCTGCTTCGCTGCGGGAGCACTGGTAGGAATTG
TAATCTGCGCGCCTGCGTTTGTGGTGCTGCTTTTCGGGGCCGGCGCTGCC
GCCTTGACCAAGTCAGACAGCAAGGCCGGCAAAATTTCCCGCAAGGTAGG
CAAGGTGTCATCCGACATTATTCTCGCTGGCGTCAGAATAGCCCGGGAGT
TCAACCTGAAGCACCGCTTGGCCGATAAGACCAAGGAAACTGCGCAACGA
GTGGCGTCGAGGGTAAGCACCGAGGTGAAAAAGCGCGGCATTGTCGATGA
CGTTAAGGCCAGGACCAAGTCCCTGTGGGCGCACATCCAAGAGCGCACCA
CACCTGCCGGTGAGGCTCCGTCACAAGCTCAGGCGCCACCCTCGGCTGGT
CTGGTCAACGACGGGACGCAGCTCCCTTTTGGCGGCACGGCAGATGCGTA
CGAAACTACCCCTTCCTCGTCCGAATGGAAGAGCTTGCCTCCGAAGACCT
TCGACGCTTGA
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