mRNA_P-littoralis_Contig117.150.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.150.1
Unique NamemRNA_P-littoralis_Contig117.150.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.600e-43
Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:  128 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 427
            R  YAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N
Sbjct:  554 RSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFIN 653          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.130e-39
Identity = 68/97 (70.10%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  137 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 427
            YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N
Sbjct:   44 YARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFIN 138          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.310e-35
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 2
Query:  137 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 427
            YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N
Sbjct:  434 YARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFIN 530          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.750e-30
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  170 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTP 415
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S L   P
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKISPLNMFP 84          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.690e-27
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  137 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFV 349
            YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   31 YARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.610e-20
Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  128 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNP 430
            R +  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++P
Sbjct:   69 RSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSP 174          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.350e-20
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  170 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVS 352
            GYI SAD SKLE LMDILRFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.370e-19
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  143 RKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 379
            RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  483 RKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.120e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2
Query:  167 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS 313
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.800e-6
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  149 KGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLE----EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 379
            K +D +   ITS D   L+ L++IL +F+ W  +L         L D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  502 KRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDL-----FLPDQTWDDLRLTILGFVAMTRYVFGDD 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE2.600e-4374.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE3.130e-3970.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.310e-3565.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE3.750e-3065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE4.690e-2771.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.610e-2047.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE2.350e-2068.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE6.370e-1953.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE2.120e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE6.800e-637.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:530400..531746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.3714092-CDS-P-littoralis_Contig117:530399..5306931680789490.3714092-CDS-P-littoralis_Contig117:530399..530693Pylaiella littoralis U1_48CDSP-littoralis_Contig117 530400..530693 -
1680789490.3831775-CDS-P-littoralis_Contig117:531610..5317211680789490.3831775-CDS-P-littoralis_Contig117:531610..531721Pylaiella littoralis U1_48CDSP-littoralis_Contig117 531611..531721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.3928697-UTR-P-littoralis_Contig117:531721..5317461680789490.3928697-UTR-P-littoralis_Contig117:531721..531746Pylaiella littoralis U1_48UTRP-littoralis_Contig117 531722..531746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.150.1prot_P-littoralis_Contig117.150.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 530400..531721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.150.1

>prot_P-littoralis_Contig117.150.1 ID=prot_P-littoralis_Contig117.150.1|Name=mRNA_P-littoralis_Contig117.150.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRYARKKGLDKKAGY
ITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDI
RVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNP
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mRNA from alignment at P-littoralis_Contig117:530400..531746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.150.1 ID=mRNA_P-littoralis_Contig117.150.1|Name=mRNA_P-littoralis_Contig117.150.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1347bp|location=Sequence derived from alignment at P-littoralis_Contig117:530400..531746- (Pylaiella littoralis U1_48)
AACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATG AGGGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGT GCATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCA CTATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAA TGTTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCC CGCGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCG TACCTCCGAAGTCCGGAAATACCGGCAAACGCCCTGTCTCCCGGCGCAGC TCGTGACGGAGATTTTATTTTTTTTGAGCTTGATTGTTGAGTTTTCATGG GCTAAAAACCCGCCACACTTGTGTTCTAACGGGATTGAACAGATATCGTA ATTTGCCAATAAAATCAGTTATTATTGTTTTCAAATAAGTCTCTTAAACA GAGATATCGCACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTC GAGACAACTTTTCTTTCGATTTCAAAATAGAGTGCGGCAAACTATTCCTC TCATCATTGCCGCGAACTGTTTGTGGCGTTGTTGGTGTTGGTGCAGGGGG TGGTGTTTGTGTCGTTTTTGTGTGATAAATGTGCTGTGTAATGGCTGCAA CGGATAGATTTCGTGACATATTATGCGGATGCCGGGGTGCGGAGTGCAGG ATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTTTTGCAAC AACTGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCTATGTATCGA CATATCTCGACGAGGCGATCACTAATATTGTTGTTTCACGTCCCAACGCG ATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTATATATATAT TTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACA CGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCG GAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATC GGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCG AGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGCGACGTCACC TGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTC CATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGA GGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTACGTCAACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:530400..531746-

>mRNA_P-littoralis_Contig117.150.1 ID=mRNA_P-littoralis_Contig117.150.1|Name=mRNA_P-littoralis_Contig117.150.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig117:530400..531746- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGATACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTAC
ATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCG
TTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGCG
ACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATC
CGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGA
TGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTACGTCA
ACCCG
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