mRNA_P-littoralis_Contig682.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig682.6.1
Unique NamemRNA_P-littoralis_Contig682.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig682.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig682contigP-littoralis_Contig682:43455..47792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size286
Hectar predicted targeting categorychloroplast
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791419.037743-UTR-P-littoralis_Contig682:43454..434771680791419.037743-UTR-P-littoralis_Contig682:43454..43477Pylaiella littoralis U1_48UTRP-littoralis_Contig682 43455..43477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791419.0487247-CDS-P-littoralis_Contig682:43477..435431680791419.0487247-CDS-P-littoralis_Contig682:43477..43543Pylaiella littoralis U1_48CDSP-littoralis_Contig682 43478..43543 +
1680791419.0616133-CDS-P-littoralis_Contig682:47597..477921680791419.0616133-CDS-P-littoralis_Contig682:47597..47792Pylaiella littoralis U1_48CDSP-littoralis_Contig682 47598..47792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig682.6.1prot_P-littoralis_Contig682.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig682 43478..47792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig682.6.1

>prot_P-littoralis_Contig682.6.1 ID=prot_P-littoralis_Contig682.6.1|Name=mRNA_P-littoralis_Contig682.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MSLVSQAGVAILLSVLVVRETRAFVATTPISCDHRLHQKKSTPLQSFSRC
NRQNTHLRNGRRHHRRAPTAATAGEGVYAEGQSGVER
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mRNA from alignment at P-littoralis_Contig682:43455..47792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig682.6.1 ID=mRNA_P-littoralis_Contig682.6.1|Name=mRNA_P-littoralis_Contig682.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4338bp|location=Sequence derived from alignment at P-littoralis_Contig682:43455..47792+ (Pylaiella littoralis U1_48)
CAAGTCGACAGCCACGTATCTCGATGTCGTTGGTATCGCAGGCGGGCGTC
GCAATTCTCCTTTCGGTGCTGGTTGTTCGAGAAACCAGGGTGAGAGATCT
CTGCACTTTGTCTCATGCTTTTTATTTCTGAACTGACCAATCACATGCTC
CTCTGTCTCTCTCTACGATCATAGACGATTCAGTATCGCCTTTGGGTTTG
GACGGTCGTGCTGTTGTTGTCTTTCCATGTGGGGTTCCTGTTGTTCCTGT
AATGCAGAGTTTTATATGCTTTCAAGTGTATGTCGTACTTCGAAAGATCA
TACTAATACGATATTGTAGACAGATTTCACATCACCCCATTGCTGTCGTT
GCCTTCATATATGGACAGGTAATTATTATGAGGGGACCGTCCACCTATGA
ACCAAGTTTGTCATATGTTGGAATCTTGGTGGAATCTTGCACAGAGCACC
CAAAACTTCACGAAATACATCGGGCCATCACACCGGTACAAGAGGGTTGG
GGGCCGAAACAACAGCCTGGGAGATGTTGGTAAGGGCCGTAATCGCGACA
CGAAAGTTGTGGTTCAGAACTCCGTGTTAATTTCGTCAGCTCTAAATCCA
ACATAAGCTCCCTTTGCTCTAAATCCTAGACAAATCGGTGAGCACGAGAG
GGCGGTCAAACAAGACCTGTGGTGTTCATCAAGCCGACGCCACGAATTAT
ATCTGTAGAAGACATCATGTACTGCATAGGCGGCGTTGGCACGCTCAGAG
CTTCTGCTGGGGGTGTGATATCGGTGGTTGAAGATATCACGCGATCCAAT
AGGTCGGGGACTCTGAGAAAAATGCCGGGTTTTTTCTTGTTTTTTCAATG
CAGACCTTACATTGGAAAGCGAATTACTCCTGAGTAAACAGAGGGAAGGG
ATTGCTGTACCCGACTCGCATTGAAAACCAAAGGCACATACCGCGGGAGG
AAGGTTTGGGCAATAAAACAAAACAAAAAACAAAAAAGCTCGTGTGTGAC
CTTCGTTTTGTGTGACCCGGGCTGATGCACCCACTTCGTACCGAAAGGTG
TAGACTGTTGCCCAGAATAAACCGGATGACAACACACGCACACAGACAAA
AAACATGCCGGAATCACAACCCTCCGGGTTTTGTCCCGTTGCTCCGCGTC
CGTCTAAAGTCCGGTTGTTTTGCTACACCCCACGCTGTGCTGGCGATCCC
AAACCATTCATTAGCGGGATGCCAGCCCACCCCCATGTTTCCCGGAGGGT
CCTGAACGATTTGGATGACTTTGCGGAGGTGTAACGTTGGCGCGAAGTCC
TTTTTTGTTTTTCTTTGCGCGGCTTCTGCTTTTTGTATTTGTGGAGATGG
CCTCATCGTCATTTCTTGGGCTGCCCCATCAGACGTGTACGAGCTGGGCC
GGCCAAGAAGCTCAGATTTTGTCCGAGGACCATATCTCACGAACCACAGC
GAATAACGAGTCACTGAAAGTATTGCTGAAATCGCCCAATCAGCGTGCGT
AGGCACAAATACGTGGTTTCTTAATCAAACGATTTCCAACGTCTGGAACC
ATAGCAGCACTGAATTATACTCAATTTAGAATAGGTGAAACCGTTGTATT
TTCAGTTTTTTTTGCGGCGGAATTTCAAAAAAATGCGTTTGCTCGGTTTC
CTCCACGAAGCGCTTCGCGCTTCATCACACTGGTCGATGCTTTGCGTACA
CCATGAAGTCGAGCGATCCACCCAGGCGGGCGTGGCAGAAGACCTCTCAA
CCGACATTCGTCATGAATCAATAGAACGGGAAGTGCCGCTTGCGTTTGCA
GTATTCGCGAGGGCGCGGCCACAAGCCCAAACCGGTGACGTCAACACAGT
TTCCTTCAAGGAAGGACGTGGAGCTGGCAGCCTTTCGGTGGCGCACGAGT
TGGGAAGAGGGTCGGAAGGGCGACCTGCCCTAAGTCGGTCAACTAGGGTA
GAATAACGCACGTAGTTGTTTCCCACGCTCTTTTATAACACTTGCTCGGT
TGGGCGGCTGCAACATTCAGGAGTTTTCAAGAAATACATCATGTATGGCC
TCTGAGGCAATTTTGCTGCTTGCTGGGTGCTCATGGGGATTTTCATCTGC
ACAGCGCAAATCATGTCTGTTTTCCACCAAATTTTGTGTGGTAGTTCGCA
ACATGCATGTCAACAATCCTATGCGCCTCCATTTTTTTTcTTTCTTTTTT
TCATGAGATAGCTGCGCTATTGTCAACACCCCAAACGCCGTATCGTGCAT
AATTCTTGAAAAAAAAAAAAACAATCGGATGTAGACACATAAATGTGTCC
GCATATGTCTTTGGCACCGTCTGTCAAATTTTCATGGGAAACGGATACAA
ATTGGGTTGTGCACAAGCAACGCACAAAAATCTGAGCCTCTTGGCCGGCC
CAGCTCGTATATACTCGATTTCGCTTATTCTGGGGGACTTTTGCAGGCCT
GCATCGTCGCTGGGCAGAGTGCCAATCCAAAATCATGCGATAGTGGGATG
TATGCTGATCTCATGTGACTCTACTGCTGTGGTGGAGTATCGGCCGATTT
TGTAGACTCTATGCTATCGAGGTATAACGTTGGCGTGAACGTTGCCTCCC
GTGCGCTGGAAAGGGGTCGCATGAAATAGCACCACCCGGTTCGATCAAAG
ATGTGATGACGCAGCTTGACTCTCGTTCAAACCAATATCAAGACGTATCA
TCAGCTTAAGGTGGAGGGTGTGACTTTGCTGAGATGTCTCTCTGCTTTCG
TGGCGACCCTTCGTCTGTGCAAGGAGCACGAGGTGTTGACTAAGTGGATT
CAGAGCATTTCTTACGGCACTGTTTTTTTGCTGGGTGTTCAAACAGTACT
GGCTGGTGGTTTGTTTCATATCGACTCATGTGATGTGAAATACGGAGTAC
TTCGTATTCGGGACCGTGGCTGTGACAATATATTTATGACCATGAAAAGT
AAAAAATGTACTACGAAGTACATTTTTTTCTTTTCTTTTTTTACCATCAC
ACATCAACGTATCGGCCTCTTTCCGGTATTTTTTTTTTTTCAAACTTTTC
CATGCCACCTGAACGGTGACCGCTAGAGCTGCTTCTGAGCTGTTGATGCC
GTTCGCAACGAAATGGCCACCTCCTTCCTTCCTTGCGAGATGGATGTGTG
AGGCTAGACATGCATGCTGCTCAATGCCATTGCTTTTTTTAGATCGGGGC
TTGCCTATAAAAGAAAGTGAAAATCTTCTCCGGAACGCCCGGCGTTCCGC
CGTATTCCGCCGCATGGAACACTTCTCTTGCCGGAGGTTTTTTGACTGGG
GGAAGACCACTGCCGCAGCACAGTAGTAGCTCAGGCCCGATCACACAACA
TGAAAATAGGGATGACGGACCCACCTCTTTCCACCCTCCCCCAACAACCT
CTTTTCTAGTGCTGCTGCTGCTGCCGGTGACCCCAAAAAACTCTTGTGTT
GTAAGCTAGGTTGTGCTAGACATGCATGCTGCTGAATGTTACGAACAGTT
ATTAAACAACGGCGCATCATTTTACGTTGCACTTTATCTTGGGTCACATG
AACGGAACATGAATGATCACCAGCTGTCGAGACTGCTGCATGAAAAAGTA
TACCTGGTAGGATTTTCGACCGGTGCAAAGCTGGGTACTGCCCTACACAC
GAGGGAGCTTGTGGCCCGCAAGGACAGGACGACTCAGGGCGATGGTTTTT
TTTTCTGTGGCACATGTACTTCACAAGATACGCGATGTACCGGCTAACCA
AGACCGGCTGTACCACGCCGATCGCTCGGCATGCCGTCCGCTCTGTGAAG
TTGAGCGGCGTCGGGCCAGGTTATTGCTACGGTGGGGGACCACGTGGGGA
CCCCTGATGCTGTTTCCTTATTTCTCTCGCCATTTTCGCCTTGTGTCGCA
TTGCGTGTGTGTATCTTCTGTTTGTTGTGCAACCTGCGTGTGTTTCTCGT
GTTGTCAGAAAGCATTCAATCCAGCCACTGCTGTGTTTCAAGATCTTGAC
CTTGACTCTGAACCTCCACCACGATTTGGGCGTCCCCATCGCGTGCACAC
GCCCCCCATCCCCCAACTCACCCCCCCCCCCCCCCCCCCCGCCTCCTATG
CATCTCCTCGTCGTTCCGGCCCGCACCAATATATTTTATTCAGGCGTTTG
TGGCGACTACTCCCATCTCTTGCGACCACCGCCTCCACCAAAAAAAAAGC
ACGCCACTACAATCTTTCTCGAGATGTAACCGCCAAAACACTCATCTCCG
AAACGGGCGACGTCACCACCGTCGCGCTCCGACAGCAGCAACAGCAGGGG
AGGGTGTTTACGCCGAGGGCCAATCTGGCGTAGAACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig682:43455..47792+

>mRNA_P-littoralis_Contig682.6.1 ID=mRNA_P-littoralis_Contig682.6.1|Name=mRNA_P-littoralis_Contig682.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig682:43455..47792+ (Pylaiella littoralis U1_48)
ATGTCGTTGGTATCGCAGGCGGGCGTCGCAATTCTCCTTTCGGTGCTGGT
TGTTCGAGAAACCAGGGCGTTTGTGGCGACTACTCCCATCTCTTGCGACC
ACCGCCTCCACCAAAAAAAAAGCACGCCACTACAATCTTTCTCGAGATGT
AACCGCCAAAACACTCATCTCCGAAACGGGCGACGTCACCACCGTCGCGC
TCCGACAGCAGCAACAGCAGGGGAGGGTGTTTACGCCGAGGGCCAATCTG
GCGTAGAACGA
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