mRNA_P-littoralis_Contig678.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.10.1
Unique NamemRNA_P-littoralis_Contig678.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:10048..10755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.0830188-UTR-P-littoralis_Contig678:10047..102161680791408.0830188-UTR-P-littoralis_Contig678:10047..10216Pylaiella littoralis U1_48UTRP-littoralis_Contig678 10048..10216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.106542-CDS-P-littoralis_Contig678:10216..104651680791408.106542-CDS-P-littoralis_Contig678:10216..10465Pylaiella littoralis U1_48CDSP-littoralis_Contig678 10217..10465 -
1680791408.1262844-CDS-P-littoralis_Contig678:10725..107551680791408.1262844-CDS-P-littoralis_Contig678:10725..10755Pylaiella littoralis U1_48CDSP-littoralis_Contig678 10726..10755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.10.1prot_P-littoralis_Contig678.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 10217..10755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.10.1

>prot_P-littoralis_Contig678.10.1 ID=prot_P-littoralis_Contig678.10.1|Name=mRNA_P-littoralis_Contig678.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
GSNIGAEANQGKPRSSNESGDVPTFKCCGCGEKLPDMLRMCKDCFDRGCE
FPREQCSVCHIRFSSTKSGSRAQYLKKSPDMMSRYYRKSPSR*
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mRNA from alignment at P-littoralis_Contig678:10048..10755-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.10.1 ID=mRNA_P-littoralis_Contig678.10.1|Name=mRNA_P-littoralis_Contig678.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig678:10048..10755- (Pylaiella littoralis U1_48)
GGATCGAACATAGGGGCAGAGGCTAACCAGGTGTGTGTGTGTGCGTGTAT
GTGTGTGTATTTGTGCTTCTGCATGCCTCCTTTGTAGTGTGTCTGGGTCG
TTCTTAGCAAACAAAGGTACGAAAAGTTTGGCGTTTTGCGAACAAGACAC
CCCGGGGCGACTCCGGTGGTGCCTCGGTGGTTTGGTTTTGCGAAAAGAAG
GGCGTCCCCAAAGGATATTCCAGTAAAACGCTCTTGCTGATTGCTAAGGT
CAATTAGATGTGCCCCCTCCTTGTTGTGGTCCATGCACAGGGGAAACCTC
GATCGTCAAATGAGAGCGGTGATGTGCCAACATTCAAATGCTGTGGCTGC
GGAGAGAAACTACCCGACATGCTGCGAATGTGCAAAGATTGCTTCGATAG
GGGCTGCGAGTTCCCGCGAGAACAATGCTCAGTGTGTCACATTCGCTTTT
CATCGACCAAATCAGGGAGCCGCGCGCAGTACCTGAAGAAGAGTCCGGAC
ATGATGAGTAGATACTACAGGAAGAGTCCGTCGCGTTGATAAACAAAATG
AAGAAGACTCGCAGCCTTCAAGATTGTCCCATTAGAGCTATCGACCGCTT
ATGCGGTAGCCCGGAGTGCCTGGTAAGGGATTTTGGGAGGGCGGAACGGC
GTCACGAGCTACAGAAGAAGCGGCGCACAACCCGGCCCAGCACTAAAAGG
GGCAGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:10048..10755-

>mRNA_P-littoralis_Contig678.10.1 ID=mRNA_P-littoralis_Contig678.10.1|Name=mRNA_P-littoralis_Contig678.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig678:10048..10755- (Pylaiella littoralis U1_48)
GGATCGAACATAGGGGCAGAGGCTAACCAGGGGAAACCTCGATCGTCAAA
TGAGAGCGGTGATGTGCCAACATTCAAATGCTGTGGCTGCGGAGAGAAAC
TACCCGACATGCTGCGAATGTGCAAAGATTGCTTCGATAGGGGCTGCGAG
TTCCCGCGAGAACAATGCTCAGTGTGTCACATTCGCTTTTCATCGACCAA
ATCAGGGAGCCGCGCGCAGTACCTGAAGAAGAGTCCGGACATGATGAGTA
GATACTACAGGAAGAGTCCGTCGCGTTGA
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