mRNA_P-littoralis_Contig677.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig677.38.1
Unique NamemRNA_P-littoralis_Contig677.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 504 bits (1297), Expect = 2.620e-175
Identity = 242/254 (95.28%), Postives = 251/254 (98.82%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRMEKE 762
            MGKVIRGQRKGKGGIFTSHTRLRKGPVK RKLDYAERHGYIKGV+KD+IHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMP+ SMPEGTVCSSIEAK+GDRGTFARCSGDYAVLISHDE+KGTSK+RLPSGSKKT+SSDCRAMVGIVAGGGRTDKPMLKAGRA+HK+RVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR EKE
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 447 bits (1149), Expect = 8.430e-153
Identity = 214/256 (83.59%), Postives = 236/256 (92.19%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR--MEKE 762
            MGKVIRGQRKGKG +F SHT+ RKG VKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA V F+NPY+FK+D EL+VAVEGMYSG FIYCGKKA LT+GNIMP+ +MPEGTVC +IEA  GDRGTFARCSGDYAV+ISHDEDKGTS+IRLPSGSKKT+ S CRAMVGIVAGGGRTDKPMLKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI+  ++KE
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIKKIVDKE 256
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 3.910e-151
Identity = 206/254 (81.10%), Postives = 234/254 (92.13%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRMEKE 762
            MGKVIRG RKG+G +FTSHTRLRKGPVK RKLDYAERHGYIKGV+K+IIHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+P+ SMPEG+V  ++E++ GDRG+ ARCSGDYAV+++HDEDKGT+KIRLPSGSKKT+ S+CRAMVGI+AGGGRTDKP+LKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI+   E
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 416 bits (1068), Expect = 1.550e-140
Identity = 192/258 (74.42%), Postives = 228/258 (88.37%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRMEKE*AEK 774
            MGKV+RG RKGKG +F SHTRLRKGP K R+LD++ER GY+KG++K+I+HEPGRGAPLA++QFQNPYK+++DNEL+V  EGMYSGQFI+CGKKA L+VGNI+PL  +PEGTV  ++E+ IGDRG   + SG Y V+I+ DEDKGTS+IRLPSG+KKT+S+ CRAMVGIVAGGGRTDKPMLKAGRA+HKYRVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++     A+K
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKKMPFNADK 258
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 414 bits (1065), Expect = 4.250e-140
Identity = 193/250 (77.20%), Postives = 220/250 (88.00%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRG RKGKG IFT+HTRLRKGPVK RK DYAE+ GY+KGV+K I+HE GRGAP+AKVQFQN Y+F+RDNEL VA EG+Y G FIYCG KA L VGN++P+ ++PEGTV  + EA+ GDRG FARCSGDYAV+++HDED GT+K+RLPSG KKTV S CRAM+GIVAGGGRTDKPMLKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 6.960e-138
Identity = 195/254 (76.77%), Postives = 219/254 (86.22%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRMEKE 762
            MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGVIKD +HEPGRGAP+AKVQF N Y++KRDN L VAVEGMY+GQF+YCGKKA LTVGNI+PL +MPEGT+  +IEAK GDRG  A+CSGDYAV+++HDEDKGT+++RLPSGSKKT+S+ CRA VGIVAGGGRTDKP+LKAGRAFHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R   AG+K GLIAARRTGRL G ++  E
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 7.050e-136
Identity = 186/250 (74.40%), Postives = 219/250 (87.60%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MG+VIRGQRKG GGIF SH + RKG   FR  DY ER GYIKGVIK+IIH+PGRGAPLA+V F++PYK++ ++EL++A EGMY+G FIY GKKA++ VGNI+PL  +PEGT+  ++EA+IGD+G FARCSGDYAV+++HDEDKG +KIRLPSGSKKT+ S CRAMVG+VAGGGRTDKP+LKAGRA+HKYRVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIK 250
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 401 bits (1031), Expect = 5.690e-135
Identity = 185/255 (72.55%), Postives = 226/255 (88.63%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR-MEKE 762
            MG+VIRGQRKG GGIF SHT  R+G   FR LDY ERHGYIKGV+K+IIH+ GRGAPLA+V +++PY++K ++EL++A EGMY+GQFIY G KA++TVGNI+PL ++PEGT+  ++EA++GDRG+FAR SGDYAV+++HDEDKG +K+RLPSGSKKTV S CRAM+G+VAGGGRTDKP+LKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A +G+KVGLIAARRTGRLRGI+ +EK+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIKKVEKD 255
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 401 bits (1031), Expect = 5.900e-135
Identity = 188/254 (74.02%), Postives = 221/254 (87.01%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRMEKE 762
            MGKVIR  RKG GGIF SHT+L K PVK RKLDYAE+HGYIKGV+K+I+HE GRGAP+A+VQF+N Y+FKRD E  VAVEG+YSGQFI+ GKKA+L +GN++PL  +PEGTV S++EA+ GDRG+FAR SG YAV+++ DED+GT+KIRLPSG+KKTVSS  R ++GI+AGGGRTDKPMLKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+KVGL+AARRTGRLRGI+   E
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254
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BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Match: H3G973_PHYRM (Ribosomal_L2_C domain-containing protein n=28 Tax=Oomycota TaxID=4762 RepID=H3G973_PHYRM)

HSP 1 Score: 398 bits (1022), Expect = 1.310e-133
Identity = 185/255 (72.55%), Postives = 223/255 (87.45%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR-MEKE 762
            MG+VIRGQRKG G IF SHT LRKGP  FR LD+ ER GYIKGV+K+IIH+ GRGAPLA+V +++PY+F+ ++EL++A EGMY+G F+Y G KA+LTVGN +PL ++PEGT+  ++EAK+GDRG+FAR SGDYAV+++HDEDKG +K+RLPSGSKK V S CRAM+G+VAGGGRTDKP+LKAGRAFHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+KVGLIAARRTGRLRGI+ +EK+
Sbjct:    1 MGRVIRGQRKGAGSIFKSHTHLRKGPAAFRALDFVERTGYIKGVVKEIIHDSGRGAPLARVTYRDPYRFQLNHELLIAAEGMYTGMFVYSGPKATLTVGNTLPLSALPEGTIVCNVEAKVGDRGSFARASGDYAVIVTHDEDKGKTKLRLPSGSKKDVPSACRAMIGVVAGGGRTDKPILKAGRAFHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKKVEKD 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig677.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI2.620e-17595.28Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7S2V227_9STRA8.430e-15383.59Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A835ZD66_9STRA3.910e-15181.10Translation protein SH3-like domain-containing pro... [more]
A0A7R9UAP5_9STRA1.550e-14074.42Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YEL9_AURAN4.250e-14077.20Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7S2WUG0_9STRA6.960e-13876.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A418F530_9STRA7.050e-13674.40Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
K3X5U7_GLOUD5.690e-13572.55Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]
I2CPH3_NANGC5.900e-13574.02Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
H3G973_PHYRM1.310e-13372.55Ribosomal_L2_C domain-containing protein n=28 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig677contigP-littoralis_Contig677:142166..147421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8U3
Preferred nameRPL8
PFAMsRibosomal_L2,Ribosomal_L2_C
Model size1676
Max annot lvl2759|Eukaryota
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
Exons3
Evalue2.6e-180
EggNOG OGsCOG0090@1|root,KOG2309@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
Descriptionstructural constituent of ribosome
Cds size765
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.0049875-UTR-P-littoralis_Contig677:142165..1430761680791408.0049875-UTR-P-littoralis_Contig677:142165..143076Pylaiella littoralis U1_48UTRP-littoralis_Contig677 142166..143076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.018725-CDS-P-littoralis_Contig677:143076..1432781680791408.018725-CDS-P-littoralis_Contig677:143076..143278Pylaiella littoralis U1_48CDSP-littoralis_Contig677 143077..143278 -
1680791408.0318272-CDS-P-littoralis_Contig677:145769..1460521680791408.0318272-CDS-P-littoralis_Contig677:145769..146052Pylaiella littoralis U1_48CDSP-littoralis_Contig677 145770..146052 -
1680791408.0449886-CDS-P-littoralis_Contig677:147141..1474211680791408.0449886-CDS-P-littoralis_Contig677:147141..147421Pylaiella littoralis U1_48CDSP-littoralis_Contig677 147142..147421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig677.38.1prot_P-littoralis_Contig677.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig677 143077..147421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig677.38.1

>prot_P-littoralis_Contig677.38.1 ID=prot_P-littoralis_Contig677.38.1|Name=mRNA_P-littoralis_Contig677.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp
MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIH
EPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGN
IMPLCSMPEGTVCSSIEAKIGDRGTFARCSGDYAVLISHDEDKGTSKIRL
PSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAFHKYRVKRNEWPHVR
GVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR
MEKE*
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mRNA from alignment at P-littoralis_Contig677:142166..147421-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig677.38.1 ID=mRNA_P-littoralis_Contig677.38.1|Name=mRNA_P-littoralis_Contig677.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5256bp|location=Sequence derived from alignment at P-littoralis_Contig677:142166..147421- (Pylaiella littoralis U1_48)
ATGGGTAAGGTTATCCGTGGACAAAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACCCGCCTCCGCAAGGGTCCCGTGAAGTTCCGCAAGCTCGACT
ACGCCGAGCGCCACGGATACATCAAGGGCGTCATCAAGGACATCATCCAC
GAGCCCGGAAGGGGAGCGCCCCTGGCCAAGGTCCAGTTCCAGAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTCATCGTGGCCGTGGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGGTACGCGTTGCACGTGGCAC
ACACTCACTGATTTCTTGGTTTATCGACCGAAGTTCTAACCCACACAAAC
ATGCTCGAGTTTTTGTGTGGGCACGAGAGAACGGATTTGATGGGTGGCTC
CCGATAACAGCACGGCTGCAGCAGCGACAACAACAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACGCACAGCCTGAACTCAAGGAGCGCGTTTGCGAAAAT
TGATGGGCGGTGCCCGATAACAGCCTGCTCGTCTGGGGGTGTGTGCATTG
TGCATGTGGAAGGAACATCACAGCCCCCCCCTGCGCCCGGCGACGAAAAG
CGGCGGCCCAATCTCGACCCTCCGCCTGTCTCCGCCTCAGTCCTTTCCTC
CTCACGCTCCCTGTGCCATTCTGTCCTCTATTTTTGCAATTGAAGGGTAA
ATGTGTACCAGTAGGGCGAAGGGAAGGAAAGGATTGAGTGCGTTCGAGAA
GGTTGGGGTTGGTTTTGGCCGCACGCAACTTGATGGATGGCGTCCGAAAA
CAGCTTTTGCAGCAGCATTCTGCTTGCGTTCTTGTGTAGTGAATTTTCAA
TTTTTTTACCCATGTTTTATTCCTTGGTACTTCGTTTGATTTATCGTACT
TGTATTTACAGCAGCAGCTTCGCTGTCCCTGCGGTGTTCTGTGGTTTGTA
TTTTAGGGCCTATTCTAACCCCTCTTATAACCGGGTTGAGTATGTTTGAC
GCAAACGACTCTCCATACGCACCTCACGGTTGAATTTTTTTGGGTCCAGC
CTTGTGTGCATGGCGTGTGTGGTAGTTGCACTGCTGTTGCTGTACGTACT
TGTTGTGCAGTGCTCCGAATCTAGTTTAGCATCACATCCTCTTGAAATCA
TGCAGGGGTTTCGTCCACAACATCCAAACTCGGTCTGTGCTTCTAGAGTT
TTTTTTTTCGATGACTACAGCGCATCTCCGTCGGCTCCCGCTGACGCTAC
ACGCGATCAGCAATGGTTTCTCCCCGAACCTGACCTTACCCCCCCCCCCC
ATCGCACTTCTTGTTGGGTCATCATTTCAACCCAAAAAAAAACACCACGA
CCACCGCCACCACCGTCAGCGTCCCTCACCGTGGGTAACATCATGCCCCT
GTGCTCCATGCCCGAGGGTACCGTGTGCTCCTCCATCGAGGCCAAGATCG
GAGACCGCGGCACCTTCGCCCGTTGCTCGGGCGACTACGCCGTCCTCATC
TCCCACGACGAGGACAAGGGCACCTCCAAGATCCGCCTCCCCTCGGGATC
GAAGAAGACCGTGAGCTCGGACTGCCGCGCCATGGTCGGCATCGTCGCCG
GTGGCGGCAGGACCGACAAGCCCATGCTCAAGGCTGGCCGCGCGTTCCAC
AAGTGAGGACGACGGTGCACCGTGTGTTACGGACTACTTTTTAAAGTTTT
GGTGCTTTTTTGCCCCATCGATAACGTGTAGGCAAAGTGATCAAAACCAA
AATACGCTGAAGAAACCCTGAAACTGAATCTGGCCATCGTATTTGAAAAG
TCTTCGCGTTTATTTCTGAATTTCTGTCCTAAGCTCTTTTCCCCGCTGTA
CCCTGATGGTATCGATATCGGCGACGACCCCCCCGTCCCCCATTCTTATT
CCATCAGCTCGATTTTCTTTGTTGGAACCTCCCTGCTTGAAATGTACGAT
TGTTCCATGTTTTTACCCCCGAGTTCGAAAATTACGTCGTTCATTTACGA
CGCGGGCTCGCGCAGGATGTTTCCGCATTTTCGATGTGCGGTGCCGAAAT
CAATTCCTCACTGCTGTGTAACATTATTATCGGTGTTGCTTCGTGTTGGT
GTGTGCGTGTCTCGACCTGTCTGCTGGAGTAATCGTTATCTTTTGCTCGC
CTCCTGGAGGTTCGCTTACCTTGCACTCAGACATTGCCCATTTTTCTACC
CTTTCTACAACACAACGCCGGTCGCTATTGAATAAAATAAACCTGGTATG
TTTTATCTACCCTTGGAGTCGTAGTCGGCGCTGGTCGTGTGTAAGATGCG
TGTTTCTTACATGGTTTGTTCCAGCCAATTCTTCAGGTACAACAAAACCG
CCGTATGGTACAGGCAGAAGAATTTTTCCAAAGGGGGTACCGGTTTTTTC
TCCGTCATTTTTGGGAGTTGACAGGTGAAACAAACTTTTCCAGAATCGCG
CGGCCGAGAGGAACTCAAAACCGGTCTTGAAAAAAAATTCCATGAACAAT
GGCCATTTTCGACTTTTTTTGGGATTTTTTCCTTTTTTTTCCTTTTTTTT
CCTTCCTTTTTTATCCTGAAACCGCAAAAAAAAAATGCCCCTAATCGAAA
CTGAATTAACCCCAACCCACCACCCAATCCATGACCGACTTGTCGAGAAG
ACACTTCGTGATAGCGAAGCAAGGTACTGCTGTACTCATACATATGTATA
TATTTAAATACATCTCATATACTAGCAGAGATTGGAACGATTTTTAATGT
GAAGAAAACACACACACACACACACACACACACACACACACACACACACA
CACACACACACATACTCCGTATATATATACACATGTACAAACAATTCACA
GCAGTAGGTAAATATACCTGGTATGATATGATATGTATATAAAAGTAAAA
TACACAACCTCAACTTTGCGTAGGAGCCGACGCCACCGTCTCCAAACTCG
TGTCCAAGCGCGAGTCGTTCAAGTGCTTTAATGATTTGTTCAAGTGTTTC
GCTGTCTTGGTCTGTGTCAGTGAACTCAGCATCGGCTTGGTACGCAAGGT
GCTCAGCACGTTCGCCATCCAAGTCCACGTCATCACGAGCGGGCGGGGCG
AACTTTCCTTTCGCAGTGAAGGCGTACTTCTTCTTTCGTGGGCGCCCGCC
GGGCATGGTCCTCGTGTGTGGGTGTGTGGGTGTGTACACCAACGTGTGTG
TGCCACCTGGTGTGTACTTAATGGTTGTGCCCTGTTGGTACTCTAACTTC
AAGTGTTAATTATTCAAAAAAAAATACTGAGGGCGCCATTTTTCACAACG
GCTTTTCTCGGCCCACAGAGTTTTTTTCAAAAAAAAAAAATGGTCCTGGG
TACAGGTCCAATTCATCCGAATCCGAGGAGTTTTTCGACATCCATCGTGC
CAGTTTTGCGCTAAAATCTCCACAGCTGGAGCAGGGAAAAGTGGGTTTTT
CGCCCATATCTCGCTTAAAAATAGATGAAACAAGAATCTGCTTCGACAGG
AATCTGCCCCTGGTCGAGATACGTTCAAAACCGGTGTCAAAAAAAAAGAT
GACACCTGTGTCGACCTGCAAAATCTTGACCAATTTTTATCGAAAAAACG
AATTACTCCGACGCAACAAAAAAAAAAAAAATCTGCCACGATGGTTCGAT
CCGTCTGAAAGAGAGCTTTCCGTCGATATATTTTATGTCTTGTAAAAGTA
AGTGACCACCTCAAAACTCAATATATAAATGTCGAACTTTTGGAAAAATT
CTTCTGCCTGTACCATATGACACTGTACTTTGAAGGGGTGGAAGTAACGG
CTTGATCCAGGCCGCAACTTAAATGCACACCTATACTGTTTTGTCTTCCA
TTAGAGGGTGCACAGGTTCAATGATGCTGTTGCAGCCATCACTGCCATTG
ATCCACCACAAACGCCTATCTTTTGCTTTCGCTCCGCCGCCTTTTTATTT
TCTAGCTCAAATTACGATGTATAATATCTCTACTCAATTCAAGCTCTACC
GGATGTACACTGCATGGCGTGCAGTGGCTGCCCTCTGAATATCAAGAGAT
TTCGTGTCTCGTCGCTTTTTCCATTCCCATCTCGCTGAAGCATTTGCTCC
CTGTTTTTGTATTTGCTTGCTTTTTTGGTCCTTTTTTACTCAGGTACCGC
GTGAAGCGTAACGAGTGGCCCCACGTGCGTGGTGTGGCGATGAACCCCGT
TGAGCACCCCTTCGGTGGTGGTAACCACCAGCACATCGGGCACCCATCCA
CGGCCAACCGTCTGGCCTCGGCTGGTCAGAAGGTCGGGCTGATCGCGGCC
CGCCGCACTGGTCGCCTGAGGGGTATCCGCATGGAGAAGGAATAAGCGGA
GAAAATTCCGGATGTGATTTGATGATGAGATGAGATAGAATCTGAGGTTC
TGTTTCTCTCTCTGATGAAACTTGAGACCCGTCTTTTGACGGGAATTTTA
CGTCTTCCGATGCAGAAGTTTTCAGATGGGAAGGTGTGATGATGTGATGG
TTCGCCAGCTGGAGTTTGTAGGAGTGGGCAATGTGGAAATCGTTTTCACG
CCTTGACTGCTAACTGGTTGTTGGAATGGGCTGCTCTAGATTGACCCCAA
AGCCCATAGTTTGCTATCGGGATGGGTAAAAATACTCGTCGGAGTGTCCT
TGTTTCGGGAAGAAACTAAGAGGTTTTCGGGTGCATTGTAGAAATCCTGT
CGTTTTTGGTTGGTTTTTCTCCGGGCCTTTGGTTTCTTGTTGGGTCACAT
GTTGACTTTTATCTCTTCCGCTAGCCACGGGAGACGACGCTTTGTTCGCC
CTCAGTCGAAGCACAAAGAAAAACGATGATCGAAAAAAATAAAATCTAAG
CGTGCGGTACGCGATGTCTGCGCGTATGACGACGGATTTGTCGCCTCGTG
TTACCACCTTGTGATGAGGGTTTCGTTGATTCGCGCACACAAGAAATCTA
GAGCAAATTTGGTGCGGTGAAAATTCTCATGTCCATCCCTTCTTTGCTTT
TTGCCTATTAGGTTTCCCTCGCTCTTTTGGAGGAGATATTTTGACCTCAC
AGGCCATACATCCCTGTCGCGGATTAAGCAGGTTGTCCGCAGTGCCACGC
ACAACATGGATCGAAAGATGGGTCTTGTTGAGCTGCACAACGCCGCGTGT
CAAAAGATGGGTATTAATGTCCTGCACGATGCCGCGTATCATATGATAGG
ATTTGATGCGCGCTGCCCTGTTCGATTCTCCCTGCACATATATTATATGA
TGAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig677:142166..147421-

>mRNA_P-littoralis_Contig677.38.1 ID=mRNA_P-littoralis_Contig677.38.1|Name=mRNA_P-littoralis_Contig677.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig677:142166..147421- (Pylaiella littoralis U1_48)
ATGGGTAAGGTTATCCGTGGACAAAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACCCGCCTCCGCAAGGGTCCCGTGAAGTTCCGCAAGCTCGACT
ACGCCGAGCGCCACGGATACATCAAGGGCGTCATCAAGGACATCATCCAC
GAGCCCGGAAGGGGAGCGCCCCTGGCCAAGGTCCAGTTCCAGAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTCATCGTGGCCGTGGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGCGTCCCTCACCGTGGGTAAC
ATCATGCCCCTGTGCTCCATGCCCGAGGGTACCGTGTGCTCCTCCATCGA
GGCCAAGATCGGAGACCGCGGCACCTTCGCCCGTTGCTCGGGCGACTACG
CCGTCCTCATCTCCCACGACGAGGACAAGGGCACCTCCAAGATCCGCCTC
CCCTCGGGATCGAAGAAGACCGTGAGCTCGGACTGCCGCGCCATGGTCGG
CATCGTCGCCGGTGGCGGCAGGACCGACAAGCCCATGCTCAAGGCTGGCC
GCGCGTTCCACAAGTACCGCGTGAAGCGTAACGAGTGGCCCCACGTGCGT
GGTGTGGCGATGAACCCCGTTGAGCACCCCTTCGGTGGTGGTAACCACCA
GCACATCGGGCACCCATCCACGGCCAACCGTCTGGCCTCGGCTGGTCAGA
AGGTCGGGCTGATCGCGGCCCGCCGCACTGGTCGCCTGAGGGGTATCCGC
ATGGAGAAGGAATAA
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